Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	V	A	K	D	L	V	V	S	L	A	Y	Q	V	R	T	E	D	G	V	L	V	D	E	S	P	V	S	A	P	L	D	Y	L	H	G	H	G	S	L	I	S	G	L	E	T	A	L	E	G	H	E	V	G	D	K	F	D	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	V	G	A	N	D	A	Y	G	Q	Y	D	E	N	L	V	Q	R	V	P	K	D	V	F	M	G	V	D	E	L	Q	V	G	M	R	F	L	A	E	T	D	Q	G	P	V	P	V	E	I	T	A	V	E	D	D	H	V	V	V	D
Secondary structure
SS confidence
Disorder									?	?	?														?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	N	H	M	L	A	G	Q	N	L	K	F	N	V	E	V	V	A	I	R	E	A	T	E	E	E	L	A	H	G	H	V	H	G	A	H	D	H	H	H	D	H	D	H	D	G	C	C	G	G	H	G	H	D	H	G	H	E	H	G
Secondary structure
SS confidence
Disorder																																			?	?	?	?	?	?	?	?	?									?			?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence		G	E	G	C	C	G	G	K	G	N	G	G	C	G	C	H
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kfw chain A Region: 1 - 196 Aligned: 196 Modelled: 196 Confidence: 100.0% Identity: 100% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli Phyre2 PDB 2k8i chain A Region: 1 - 167 Aligned: 167 Modelled: 167 Confidence: 100.0% Identity: 99% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd Phyre2 PDB 3cgn chain A Region: 1 - 155 Aligned: 150 Modelled: 155 Confidence: 100.0% Identity: 49% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd Phyre2 PDB 2kr7 chain A Region: 1 - 146 Aligned: 145 Modelled: 146 Confidence: 100.0% Identity: 32% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd Phyre2 PDB 3prd chain A Region: 3 - 149 Aligned: 142 Modelled: 147 Confidence: 100.0% Identity: 25% PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 Phyre2 PDB 3pr9 chain A Region: 3 - 141 Aligned: 134 Modelled: 139 Confidence: 100.0% Identity: 25% PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 Phyre2 PDB 1ix5 chain A Region: 3 - 141 Aligned: 135 Modelled: 139 Confidence: 100.0% Identity: 38% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2pbc chain D Region: 1 - 141 Aligned: 92 Modelled: 92 Confidence: 99.7% Identity: 34% PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 Phyre2 PDB 1q6h chain A Region: 2 - 140 Aligned: 89 Modelled: 94 Confidence: 99.7% Identity: 26% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1q6u chain A Region: 2 - 142 Aligned: 92 Modelled: 93 Confidence: 99.7% Identity: 24% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli Phyre2 PDB 1c9h chain A Region: 2 - 140 Aligned: 92 Modelled: 94 Confidence: 99.7% Identity: 24% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1fd9 chain A Region: 2 - 142 Aligned: 92 Modelled: 96 Confidence: 99.6% Identity: 24% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 3jxv chain A Region: 2 - 139 Aligned: 93 Modelled: 93 Confidence: 99.6% Identity: 23% PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 Phyre2 PDB 2vcd chain A Region: 2 - 143 Aligned: 94 Modelled: 97 Confidence: 99.6% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin Phyre2 PDB 1yat chain A Region: 2 - 139 Aligned: 91 Modelled: 93 Confidence: 99.6% Identity: 25% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2lgo chain A Region: 2 - 139 Aligned: 89 Modelled: 89 Confidence: 99.6% Identity: 30% PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a Phyre2 PDB 2ppn chain A domain 1 Region: 2 - 140 Aligned: 92 Modelled: 94 Confidence: 99.6% Identity: 25% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1rou chain A Region: 2 - 140 Aligned: 91 Modelled: 91 Confidence: 99.6% Identity: 24% PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures Phyre2 PDB 1pbk chain A Region: 2 - 139 Aligned: 92 Modelled: 92 Confidence: 99.6% Identity: 32% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1q1c chain A domain 1 Region: 2 - 141 Aligned: 92 Modelled: 92 Confidence: 99.6% Identity: 24% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 1 c2kfwA_ 2 c2k8iA_ 3 c3cgnA_ 4 c2kr7A_ 5 c3prdA_ 6 c3pr9A_ 7 d1ix5a_ 8 c2pbcD_ 9 d1q6ha_ 10 c1q6uA_ 11 d1c9ha_ 12 d1fd9a_ 13 c3jxvA_ 14 c2vcdA_ 15 d1yata_ 16 c2lgoA_ 17 d2ppna1 18 c1rouA_ 19 d1pbka_ 20 d1q1ca1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kfwA_ 100.0 100 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 2 c2k8iA_ 100.0 99 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 3 c3cgnA_ 100.0 49 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 4 c2kr7A_ 100.0 32 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 5 c3prdA_ 100.0 25 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 6 c3pr9A_ 100.0 25 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 7 d1ix5a_ 100.0 38 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 8 c2pbcD_ 99.7 34 PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 9 d1q6ha_ 99.7 26 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 10 c1q6uA_ 99.7 24 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli 11 d1c9ha_ 99.7 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 12 d1fd9a_ 99.6 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 13 c3jxvA_ 99.6 23 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 14 c2vcdA_ 99.6 22 PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin 15 d1yata_ 99.6 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 16 c2lgoA_ 99.6 30 PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a 17 d2ppna1 99.6 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 18 c1rouA_ 99.6 24 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 19 d1pbka_ 99.6 32 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 20 d1q1ca1 99.6 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 21 d1r9ha_ not modelled 99.6 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 22 c3o5fA_ not modelled 99.6 18 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii 23 c2vn1A_ not modelled 99.5 26 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 24 c2f4eB_ not modelled 99.5 27 PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana 25 c2jwxA_ not modelled 99.5 26 PDB header:apoptosis, isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd) 26 c3o5dB_ not modelled 99.5 15 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: crystal structure of a fragment of fkbp51 comprising the fk1 and fk22 domains 27 c2ke0A_ not modelled 99.5 27 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 28 c2d9fA_ not modelled 99.5 24 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of ruh-047, an fkbp domain from human2 cdna 29 c1hxvA_ not modelled 99.5 26 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 30 d1hxva_ not modelled 99.5 26 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 31 c3oe2A_ not modelled 99.5 33 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) 32 d1l1pa_ not modelled 99.5 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 33 d1jvwa_ not modelled 99.5 26 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 34 c1q1cA_ not modelled 99.5 17 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of n(1-260) of human fkbp52 35 d1kt0a2 not modelled 99.5 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 36 d1u79a_ not modelled 99.4 26 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 37 d1kt0a3 not modelled 99.4 19 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 38 d1q1ca2 not modelled 99.4 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 39 d1kt1a3 not modelled 99.3 21 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 40 c1kt0A_ not modelled 99.3 15 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 41 d1w26a3 not modelled 99.3 27 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 42 d1t11a3 not modelled 99.3 27 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 43 c3b7xA_ not modelled 99.2 27 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 6; PDBTitle: crystal structure of human fk506-binding protein 6 44 d1kt1a2 not modelled 99.1 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 45 c2if4A_ not modelled 99.1 23 PDB header:signaling protein Chain: A: PDB Molecule:atfkbp42; PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana 46 c1w26B_ not modelled 99.0 27 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 47 c1qz2B_ not modelled 99.0 28 PDB header:isomerase/chaperone Chain: B: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90 48 c1t11A_ not modelled 98.9 26 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 49 c3gtyX_ not modelled 98.5 20 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 50 c3htxA_ not modelled 97.6 19 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 51 d1pkma1 not modelled 86.3 16 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 52 d2g50a1 not modelled 85.9 15 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 53 d1liua1 not modelled 79.8 18 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 54 d1pkla1 not modelled 79.7 15 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 55 d1e0ta1 not modelled 73.3 25 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 56 d1oi1a1 not modelled 71.4 16 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 57 c2e6zA_ not modelled 70.1 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 58 d1a3xa1 not modelled 68.6 16 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 59 c1aqfB_ not modelled 65.8 15 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate 60 d1oz2a1 not modelled 65.0 18 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 61 c1t5aB_ not modelled 64.9 15 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2 62 d1oz2a3 not modelled 63.2 22 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 63 d2etna2 not modelled 61.9 22 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 64 d1wjqa_ not modelled 60.1 14 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 65 d1oz2a2 not modelled 60.0 31 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 66 d1qfha2 not modelled 58.3 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 67 d1oi1a2 not modelled 57.7 24 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 68 d2f23a2 not modelled 56.2 17 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 69 c3e0vB_ not modelled 56.2 15 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 70 c3feoB_ not modelled 54.9 18 PDB header:metal binding protein Chain: B: PDB Molecule:mbt domain-containing protein 1; PDBTitle: the crystal structure of mbtd1 71 d2qn6a2 not modelled 50.7 15 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 72 d1wjsa_ not modelled 49.0 11 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 73 d1vhka1 not modelled 48.9 19 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 74 d1wjra_ not modelled 47.7 16 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 75 d1kk1a2 not modelled 47.4 11 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 76 c2r58A_ not modelled 46.4 29 PDB header:transcription Chain: A: PDB Molecule:polycomb protein scm; PDBTitle: crystal structure of the two mbt repeats from sex-comb on midleg (scm)2 in complex with di-methyl lysine 77 d1s0ua2 not modelled 46.2 13 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 78 c2vytA_ not modelled 44.9 16 PDB header:transcription Chain: A: PDB Molecule:sex comb on midleg-like protein 2; PDBTitle: the mbt repeats of human scml2 bind to peptides containing2 mono methylated lysine. 79 c3bmbB_ not modelled 41.7 26 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 80 d1qfha1 not modelled 41.3 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 81 c3h6zA_ not modelled 40.8 16 PDB header:transcription Chain: A: PDB Molecule:polycomb protein sfmbt; PDBTitle: crystal structure of the four mbt repeats of drosophila melanogaster2 sfmbt in complex with peptide rhr (me)k vlr 82 d1ea9c2 not modelled 39.8 20 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 83 d1nxza1 not modelled 39.2 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 84 c3ceyA_ not modelled 39.0 19 PDB header:transcription regulator Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein; PDBTitle: crystal structure of l3mbtl2 85 c2etnA_ not modelled 38.8 15 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 86 c2pn0D_ not modelled 38.4 26 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 87 c2ds4A_ not modelled 38.1 16 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 88 d1c8za_ not modelled 37.4 19 Fold:Tubby C-terminal domain-like Superfamily:Tubby C-terminal domain-like Family:Transcriptional factor tubby, C-terminal domain 89 c1pklB_ not modelled 36.2 15 PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase 90 d1js8a2 not modelled 35.9 14 Fold:C-terminal domain of mollusc hemocyanin Superfamily:C-terminal domain of mollusc hemocyanin Family:C-terminal domain of mollusc hemocyanin 91 c2ba0A_ not modelled 34.7 24 PDB header:rna binding protein Chain: A: PDB Molecule:archeal exosome rna binding protein rrp4; PDBTitle: archaeal exosome core 92 c3ma8A_ not modelled 33.2 19 PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of cgd1_2040, a pyruvate kinase from cryptosporidium2 parvum 93 c3o44G_ not modelled 32.8 20 PDB header:toxin Chain: G: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore 94 c3besR_ not modelled 32.3 22 PDB header:immune system Chain: R: PDB Molecule:interferon-gamma binding protein c4r; PDBTitle: structure of a poxvirus ifngbp/ifng complex 95 c2jz2A_ not modelled 32.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 96 d1f00i1 not modelled 31.3 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Invasin/intimin cell-adhesion fragments Family:Invasin/intimin cell-adhesion fragments 97 c2je6I_ not modelled 31.2 15 PDB header:hydrolase Chain: I: PDB Molecule:exosome complex rna-binding protein 1; PDBTitle: structure of a 9-subunit archaeal exosome 98 c1xezA_ not modelled 30.6 20 PDB header:toxin Chain: A: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound 99 c1e0tD_ not modelled 29.8 25 PDB header:phosphotransferase Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: r292d mutant of e. coli pyruvate kinase 100 c1qfhB_ not modelled 28.8 22 PDB header:actin binding protein Chain: B: PDB Molecule:protein (gelation factor); PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6 101 c2egwB_ not modelled 27.7 4 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 102 c2eqmA_ not modelled 26.5 19 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 103 d1fw8a_ not modelled 26.4 33 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 104 d1gesa2 not modelled 26.3 12 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 105 d1v10a2 not modelled 25.5 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 106 c3pxpA_ not modelled 25.0 22 PDB header:transcription regulator Chain: A: PDB Molecule:helix-turn-helix domain protein; PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution 107 c3q1jA_ not modelled 24.1 18 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 108 c1oz3C_ not modelled 23.9 24 PDB header:transcription Chain: C: PDB Molecule:lethal(3)malignant brain tumor-like protein; PDBTitle: crystal structure of 3-mbt repeats of lethal (3) malignant brain tumor2 (native-i) at 1.85 angstrom 109 d3lada2 not modelled 23.7 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 110 d2bi0a2 not modelled 23.3 13 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 111 d1nz9a_ not modelled 22.2 9 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 112 c2e28A_ not modelled 21.8 20 PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus 113 c2kvqG_ not modelled 21.7 11 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 114 c2jvvA_ not modelled 21.7 11 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 115 c3eoeC_ not modelled 21.5 15 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007 116 d1jnsa_ not modelled 21.0 9 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 117 d2hi6a1 not modelled 21.0 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:AF0055-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0