Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	S	D	S	K	L	L	A	S	A	A	W	D	A	Q	S	L	N	E	L	K	A	K	A	G	E	D	P	A	A	N	I	R	P	V	A	R	Q	V	E	G	M	F	V	Q	M	M	L	K	S	M	R	D	A	L	P	K	D	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?									?	?	?	?	?	?	?																									?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	F	S	S	E	H	T	R	L	Y	T	S	M	Y	D	Q	Q	I	A	Q	Q	M	T	A	G	K	G	L	G	L	A	E	M	M	V	K	Q	M	T	P	E	Q	P	L	P	E	E	S	T	P	A	A	P	M	K	F	P	L	E	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?																			?	?	?	?	?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	V	R	Y	Q	N	Q	A	L	S	Q	L	V	Q	K	A	V	P	R	N	Y	D	D	S	L	P	G	D	S	K	A	F	L	A	Q	L	S	L	P	A	Q	L	A	S	Q	Q	S	G	V	P	H	H	L	I	L	A	Q	A	A	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	S	G	W	G	Q	R	Q	I	R	R	E	N	G	E	P	S	Y	N	L	F	G	V	K	A	S	G	N	W	K	G	P	V	T	E	I	T	T	T	E	Y	E	N	G	E	A	K	K	V	K	A	K	F	R	V	Y	S	S	Y	L
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	A	L	S	D	Y	V	G	L	L	T	R	N	P	R	Y	A	A	V	T	T	A	A	S	A	E	Q	G	A	Q	A	L	Q	D	A	G	Y	A	T	D	P	H	Y	A	R	K	L	T	N	M	I	Q	Q	M	K	S	I	S	D	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.
Sequence		V	S	K	T	Y	S	M	N	I	D	N	L	F
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2zyc chain A Region: 150 - 300 Aligned: 144 Modelled: 151 Confidence: 100.0% Identity: 45% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 Phyre2 PDB 3fi7 chain A Region: 143 - 293 Aligned: 146 Modelled: 151 Confidence: 100.0% Identity: 32% PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain Phyre2 PDB 1qus chain A Region: 149 - 188 Aligned: 40 Modelled: 40 Confidence: 96.9% Identity: 28% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 3mgw chain A Region: 152 - 185 Aligned: 34 Modelled: 34 Confidence: 95.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme Phyre2 PDB 3gxk chain B Region: 152 - 185 Aligned: 34 Modelled: 34 Confidence: 95.1% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 Phyre2 PDB 1gbs chain A Region: 151 - 186 Aligned: 36 Modelled: 36 Confidence: 95.1% Identity: 14% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: G-type lysozyme Phyre2 PDB 2y8p chain A Region: 149 - 184 Aligned: 36 Modelled: 36 Confidence: 95.0% Identity: 33% PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli Phyre2 PDB 1qsa chain A domain 2 Region: 157 - 184 Aligned: 28 Modelled: 28 Confidence: 94.8% Identity: 21% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 3bkh chain A Region: 136 - 184 Aligned: 49 Modelled: 49 Confidence: 89.8% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 Phyre2 PDB 1nvm chain A domain 1 Region: 157 - 175 Aligned: 19 Modelled: 19 Confidence: 60.7% Identity: 21% Fold: RuvA C-terminal domain-like Superfamily: post-HMGL domain-like Family: DmpG/LeuA communication domain-like Phyre2 PDB 1yt3 chain A domain 2 Region: 150 - 181 Aligned: 32 Modelled: 32 Confidence: 36.7% Identity: 6% Fold: SAM domain-like Superfamily: HRDC-like Family: RNase D C-terminal domains Phyre2 PDB 1sly chain A Region: 157 - 184 Aligned: 28 Modelled: 28 Confidence: 27.3% Identity: 21% PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a Phyre2 PDB 2k0n chain A Region: 14 - 46 Aligned: 29 Modelled: 29 Confidence: 27.1% Identity: 31% PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription PDBTitle: solution structure of yeast gal11p kix domain Phyre2 PDB 2fbd chain B Region: 159 - 203 Aligned: 44 Modelled: 45 Confidence: 25.9% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:lysozyme 1; PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang. Phyre2 PDB 1yro chain A domain 1 Region: 159 - 203 Aligned: 45 Modelled: 45 Confidence: 20.5% Identity: 18% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: C-type lysozyme Phyre2 PDB 2eq7 chain C Region: 158 - 172 Aligned: 15 Modelled: 15 Confidence: 18.9% Identity: 27% PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo Phyre2 PDB 3l87 chain A Region: 68 - 91 Aligned: 24 Modelled: 24 Confidence: 18.8% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: the crystal structure of smu.143c from streptococcus mutans ua159 Phyre2 PDB 2eq9 chain C Region: 158 - 172 Aligned: 15 Modelled: 15 Confidence: 18.3% Identity: 20% PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb Phyre2 PDB 1t3c chain A Region: 169 - 237 Aligned: 53 Modelled: 55 Confidence: 14.6% Identity: 13% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Clostridium neurotoxins, catalytic domain Phyre2 PDB 2eq8 chain C Region: 158 - 172 Aligned: 15 Modelled: 15 Confidence: 14.4% Identity: 13% PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp Phyre2 1 c2zycA_ 2 c3fi7A_ 3 d1qusa_ 4 c3mgwA_ 5 c3gxkB_ 6 d1gbsa_ 7 c2y8pA_ 8 d1qsaa2 9 c3bkhA_ 10 d1nvma1 11 d1yt3a2 12 c1slyA_ 13 c2k0nA_ 14 c2fbdB_ 15 d1yroa1 16 c2eq7C_ 17 c3l87A_ 18 c2eq9C_ 19 d1t3ca_ 20 c2eq8C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2zycA_ 100.0 45 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 2 c3fi7A_ 100.0 32 PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain 3 d1qusa_ 96.9 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 4 c3mgwA_ 95.2 18 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme 5 c3gxkB_ 95.1 18 PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 6 d1gbsa_ 95.1 14 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:G-type lysozyme 7 c2y8pA_ 95.0 33 PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli 8 d1qsaa2 94.8 21 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 9 c3bkhA_ 89.8 20 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 10 d1nvma1 60.7 21 Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like 11 d1yt3a2 36.7 6 Fold:SAM domain-like Superfamily:HRDC-like Family:RNase D C-terminal domains 12 c1slyA_ 27.3 21 PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a 13 c2k0nA_ 27.1 31 PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription PDBTitle: solution structure of yeast gal11p kix domain 14 c2fbdB_ 25.9 25 PDB header:hydrolase Chain: B: PDB Molecule:lysozyme 1; PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang. 15 d1yroa1 20.5 18 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 16 c2eq7C_ 18.9 27 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 17 c3l87A_ 18.8 29 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: the crystal structure of smu.143c from streptococcus mutans ua159 18 c2eq9C_ 18.3 20 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 19 d1t3ca_ 14.6 13 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Clostridium neurotoxins, catalytic domain 20 c2eq8C_ 14.4 13 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 21 d1bw6a_ not modelled 13.7 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 22 d1h3ob_ not modelled 13.2 17 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 23 c2cooA_ not modelled 12.4 0 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase 24 c3dv0I_ not modelled 12.4 13 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 25 d1w85i_ not modelled 12.4 13 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 26 d1w4ha1 not modelled 12.2 0 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 27 d1gd6a_ not modelled 12.1 20 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 28 d1mp1a_ not modelled 12.0 20 Fold:PWI domain Superfamily:PWI domain Family:PWI domain 29 d2p02a2 not modelled 11.6 38 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 30 c3sn6R_ not modelled 11.3 11 PDB header:signaling protein/hydrolase Chain: R: PDB Molecule:lysozyme, beta-2 adrenergic receptor; PDBTitle: crystal structure of the beta2 adrenergic receptor-gs protein complex 31 d2cyua1 not modelled 11.2 0 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32 c1ewrA_ not modelled 10.7 21 PDB header:hydrolase Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure of taq muts 33 d1p35a_ not modelled 10.7 67 Fold:Baculovirus p35 protein Superfamily:Baculovirus p35 protein Family:Baculovirus p35 protein 34 d1qm4a2 not modelled 9.7 40 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 35 c1w3dA_ not modelled 9.6 13 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 36 d1alca_ not modelled 9.5 21 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 37 d1iiza_ not modelled 9.0 23 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 38 d1lm4a_ not modelled 8.9 29 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 39 d1lm6a_ not modelled 8.9 29 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 40 d2bgxa2 not modelled 8.7 12 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 41 d1wuda1 not modelled 8.7 22 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 42 c2lmdA_ not modelled 8.6 14 PDB header:transcription Chain: A: PDB Molecule:prospero homeobox protein 1; PDBTitle: minimal constraints solution nmr structure of prospero homeobox2 protein 1 from homo sapiens, northeast structural genomics consortium3 target hr4660b 43 d1yzma1 not modelled 8.3 16 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 44 d1f6sa_ not modelled 8.3 24 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 45 c1w4kA_ not modelled 8.3 13 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase e2; PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions 46 d1w7pd2 not modelled 8.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 47 d1mxaa2 not modelled 8.1 38 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 48 d1u5tb1 not modelled 8.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 49 c1zwvA_ not modelled 7.9 0 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 50 d1b9oa_ not modelled 7.7 19 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 51 c1u1iC_ not modelled 7.2 33 PDB header:isomerase Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase; PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus 52 c2bh7A_ not modelled 7.2 15 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms 53 d1z0kb1 not modelled 7.0 18 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 54 d1fkqa_ not modelled 6.8 28 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 55 c1wx4B_ not modelled 6.1 18 PDB header:oxidoreductase/metal transport Chain: B: PDB Molecule:melc; PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of dithiothreitol 56 d1pjqa3 not modelled 6.1 14 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 57 d2csba2 not modelled 5.7 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 58 c2l69A_ not modelled 5.7 20 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 59 d2coba1 not modelled 5.6 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain 60 d1bala_ not modelled 5.4 0 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 61 d1tuka1 not modelled 5.3 42 Fold:Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin Superfamily:Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin Family:Plant lipid-transfer and hydrophobic proteins 62 d2jn6a1 not modelled 5.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like 63 c3cymA_ not modelled 5.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bad_0989; PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0