Email l.a.kelley@imperial.ac.uk Description P18005 Date Thu Jan 5 11:36:31 GMT 2012 Unique Job ID b1cc13bdb2b7e41f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1kd8E_ 32.5 18 PDB header:de novo protein Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 2 c3lg8B_ 24.6 31 PDB header:hydrolase Chain: B: PDB Molecule:a-type atp synthase subunit e; PDBTitle: crystal structure of the c-terminal part of subunit e (e101-206) from2 methanocaldococcus jannaschii of a1ao atp synthase 3 c2f9jP_ 24.3 50 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 4 d1gt0c1 16.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 5 d2qi2a1 15.3 25 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 6 c3lydA_ 13.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans 7 d1xl7a2 13.0 17 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 8 c1e2vB_ 12.7 38 PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii 9 c2qi2A_ 12.5 25 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein pelota related protein; PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein 10 d1y1pa1 12.2 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 11 d1vf5c1 12.2 33 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 12 c3mcaB_ 11.6 20 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 13 d1ci3m1 11.1 40 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 14 d1e2wa1 11.0 40 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 15 c2zkrx_ 10.5 67 PDB header:ribosomal protein/rna Chain: X: PDB Molecule:rna helices; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 16 c2fipA_ 10.4 30 PDB header:transcription Chain: A: PDB Molecule:late genes activator; PDBTitle: phage phi29 transcription regulator p4 17 d2vgna1 10.4 31 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 18 d1hcza1 10.3 35 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 19 c3jywW_ 10.2 33 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 20 d1yu3a2 10.1 40 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Mtd variable domain 21 c3agjD_ not modelled 10.1 21 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 22 c3agjB_ not modelled 10.1 21 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 23 d1em8b_ not modelled 9.9 25 Fold:DNA polymerase III psi subunit Superfamily:DNA polymerase III psi subunit Family:DNA polymerase III psi subunit 24 d1whza_ not modelled 9.9 25 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 25 c2j376_ not modelled 9.6 44 PDB header:ribosome Chain: 6: PDB Molecule:ribosomal protein l31; PDBTitle: model of mammalian srp bound to 80s rncs 26 c2h4tB_ not modelled 9.5 21 PDB header:transferase Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii 27 c3obyB_ not modelled 9.5 21 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 28 c2e75C_ not modelled 9.4 33 PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 29 c3kztB_ not modelled 9.4 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 30 c3obwA_ not modelled 9.2 19 PDB header:hydrolase Chain: A: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity 31 c3nauA_ not modelled 9.2 13 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2) 32 d1pufa_ not modelled 9.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 33 c4a1eW_ not modelled 9.2 44 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 34 c3m9vA_ not modelled 9.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent oxidoreductase; PDBTitle: x-ray structure of a kijd3 in complex with dtdp 35 d1vqox1 not modelled 8.9 56 Fold:Ribosomal protein L31e Superfamily:Ribosomal protein L31e Family:Ribosomal protein L31e 36 d1vkra_ not modelled 8.8 22 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 37 c1vkrA_ not modelled 8.8 22 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 38 c2jxmB_ not modelled 8.6 33 PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex 39 c3nbmA_ not modelled 8.5 10 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 40 d1yu0a2 not modelled 8.4 40 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Mtd variable domain 41 c1t6fA_ not modelled 8.4 19 PDB header:cell cycle Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of the coiled-coil dimerization motif of2 geminin 42 c1ctmA_ not modelled 8.4 35 PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation 43 d1w6ga2 not modelled 8.4 13 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 44 d1pzra_ not modelled 8.1 25 Fold:HLH-like Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS) Family:Docking domain B of the erythromycin polyketide synthase (DEBS) 45 d1nk3p_ not modelled 8.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 46 c3phfX_ not modelled 7.8 33 PDB header:viral protein Chain: X: PDB Molecule:envelope glycoprotein l; PDBTitle: crystal structure of the epstein-barr virus gh and gl complex 47 c1q90A_ not modelled 7.8 38 PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 48 d9anta_ not modelled 7.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 49 d1f43a_ not modelled 7.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 50 c2pd0D_ not modelled 7.2 29 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: protein cgd2_2020 from cryptosporidium parvum 51 d1tu2b1 not modelled 7.2 33 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 52 d1mh3a1 not modelled 7.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 53 c2zfdB_ not modelled 7.1 14 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 54 c2e19A_ not modelled 7.0 14 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 55 c2da1A_ not modelled 6.9 25 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 56 c3hp7A_ not modelled 6.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 57 d1vnda_ not modelled 6.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 58 d2k8ea2 not modelled 6.3 21 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 59 c1s1iW_ not modelled 6.3 33 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l31; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 60 c1tu2B_ not modelled 6.3 33 PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures 61 d2k49a1 not modelled 6.2 21 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 62 d1le8a_ not modelled 6.2 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 63 d1sana_ not modelled 6.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 64 c1yfsB_ not modelled 6.0 22 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 65 d1fjlb_ not modelled 6.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 66 d1bw5a_ not modelled 5.8 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 67 c2hl7A_ not modelled 5.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 68 c3czcA_ not modelled 5.6 33 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 69 c2lkyA_ not modelled 5.5 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b 70 d2elca1 not modelled 5.5 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 71 c3hxxA_ not modelled 5.5 28 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp 72 d1iqoa_ not modelled 5.5 22 Fold:Hypothetical protein MTH1880 Superfamily:Hypothetical protein MTH1880 Family:Hypothetical protein MTH1880 73 d2fj6a1 not modelled 5.5 18 Fold:SAM domain-like Superfamily:YozE-like Family:YozE-like 74 c2iouC_ not modelled 5.5 40 PDB header:viral protein/membrane protein Chain: C: PDB Molecule:major tropism determinant p1; PDBTitle: major tropism determinant p1 (mtd-p1) variant complexed with2 bordetella brochiseptica virulence factor pertactin extracellular3 domain (prn-e). 75 d1ztpa1 not modelled 5.4 18 Fold:eIF4e-like Superfamily:eIF4e-like Family:BLES03-like 76 d1x87a_ not modelled 5.3 45 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 77 c3sxuB_ not modelled 5.2 25 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit psi; PDBTitle: structure of the e. coli ssb-dna polymerase iii interface 78 c2vgmA_ not modelled 5.0 42 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay.