Job Description P76205 Confidence 99.88% Date Thu Jan 5 12:20:31 GMT 2012 Rank 35 Aligned Residues 184 % Identity 20% Template c2rfaA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:transient receptor potential cation channel subfamily v PDBTitle: crystal structure of the mouse trpv6 ankyrin repeat domain Resolution 1.70 Å

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		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		G	T	P	A	L	F	L	A	M	M	N	G	H	T	D	N	V	K	I	F	M	Q	.	E	I	Q	S	L	V	D	N	H	I	I	H	E	D	N	L	V	K	L	L	Q	T	K	S	A	N	E	T	P	G	L	Y	I	S	M	L	Y	G	F	D	E	I	I	D	I	F	L	N	A	L	T	T	P	I	A	Q	E
Query Conservation																								.
Alig confidence																								.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	E	S	P	L	L	L	A	A	K	E	N	D	V	Q	A	L	S	K	L	L	K	F	E	G	C	E	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	G	A	M	G	E	T	A	L	H	I	A	A	L	Y	D	N	L	E	A	A	M	V	L	M	E	A	A	P	E	L	V	F	E	P
Template Known Secondary structure		T	T									T	T										T	T	T		S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S										T	T													G	G	G	G	G
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.																.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.																																					490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	N	K	K	L	V	M	S	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	I	H	D	G	E	P	G	L	Y	A	A	M	E	N	N	H	P	L	C	V	T	R	F	L	S	K	I	N	G	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	S	E	L	Y	E	G	Q	T	A	L	H	I	A	V	I	N	Q	N	V	N	L	V	R	A	L	L	A	R	G	A	S	V	S	A	R	A	T	G	S	V	F	H	Y	R	P	H	N	L	I	Y	Y	G	E	H	P	L	S	F	A	A	C	V	G	S	E	E	I	V	R	L	L	I	E	H	G	A	D	I
Template Known Secondary structure				S	T	T	T	T	T										T	T											T	T			T	T					S	G	G	G	S			T	T		S					S	S									T											T	T			T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	K	Y	K	L	S	K	A	N	I	M	D	L	L	K	G	A	T	A	Q	G	T	P	A	L	Y	I	A	M	S	K	G	N	E	D	V	V	L	S	Y	I	S	T	L	G	A	F	A	K	K	H	S	F	S	Q	H	Q	L	F	T	L	L	A	A	K	N	H	D	N	M	S	A	V	H	I	A	I	H	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	Q	D	S	L	G	N	T	V	L	H	I	L	I	L	Q	P	N	K	T	F	A	C	Q	M	Y	N	L	L	L	S	Y	D	G	G	D	H	L	K	S	L	.	.	.	.	.	E	L	V	P	N	N	Q	G	L	T	P	F	K	L	A	G	V	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				T	T	S									T		S															T	T		S		S	S			G	.	.	.	.	.	G	G				T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template SS confidence
																	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	Y	K	T	V	E	T	Y	Y	A	A	I	N	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	I	V	M	F	Q	H	L	M	Q	K	R	K	H	I
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions