Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	N	I	R	P	L	P	Q	F	K	Y	H	P	K	P	L	E	T	G	A	F	E	Q	D	K	T	V	E	C	D	C	C	E	Q	Q	T	S	V	Y	Y	S	G	P	F	Y	C	V	D	E	V	E	H	L	C	P	W	C	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	D	G	S	A	A	E	K	F	A	G	S	F	Q	D	D	A	S	I	E	G	V	E	F	E	Y	D	E	E	D	E	F	A	G	I	K	N	T	Y	P	D	E	M	L	K	E	L	V	E	R	T	P	G	Y	H	G	W	Q	Q	E
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	W	L	A	H	C	G	D	F	C	V	F	I	G	Y	V	G	W	N	D	I	K	D	R	L	D	E	F	A	N	L	E	E	D	C	E	N	F	G	I	R	N	S	D	L	A	K	C	L	Q	K	G	G	H	C	Q	G	Y	L	F
Secondary structure
SS confidence
Disorder																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Sequence		R	C	L	H	C	G	K	L	R	L	W	G	D	F	S
Secondary structure
SS confidence
Disorder															?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2v5i chain A Region: 171 - 185 Aligned: 15 Modelled: 15 Confidence: 34.0% Identity: 60% PDB header:viral protein Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7 PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus Phyre2 PDB 2gzo chain A domain 1 Region: 127 - 160 Aligned: 26 Modelled: 34 Confidence: 28.3% Identity: 31% Fold: VC0467-like Superfamily: VC0467-like Family: VC0467-like Phyre2 PDB 2haf chain A domain 1 Region: 127 - 160 Aligned: 26 Modelled: 34 Confidence: 27.8% Identity: 27% Fold: VC0467-like Superfamily: VC0467-like Family: VC0467-like Phyre2 PDB 3kzq chain E Region: 53 - 117 Aligned: 27 Modelled: 27 Confidence: 26.0% Identity: 37% PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 Phyre2 PDB 2aj2 chain A Region: 127 - 160 Aligned: 26 Modelled: 34 Confidence: 25.0% Identity: 27% PDB header:unknown function Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467; PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8. Phyre2 PDB 2in3 chain A Region: 53 - 59 Aligned: 7 Modelled: 7 Confidence: 24.5% Identity: 43% PDB header:isomerase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea Phyre2 PDB 2do8 chain A domain 1 Region: 127 - 160 Aligned: 26 Modelled: 34 Confidence: 23.9% Identity: 23% Fold: VC0467-like Superfamily: VC0467-like Family: VC0467-like Phyre2 PDB 1x31 chain D Region: 56 - 123 Aligned: 53 Modelled: 68 Confidence: 23.8% Identity: 19% PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 Phyre2 PDB 2ct1 chain A domain 1 Region: 179 - 189 Aligned: 11 Modelled: 11 Confidence: 21.6% Identity: 36% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 2dvw chain B Region: 104 - 116 Aligned: 13 Modelled: 13 Confidence: 21.1% Identity: 31% PDB header:cell cycle/protein-binding Chain: B: PDB Molecule:26s protease regulatory subunit 6b; PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome Phyre2 PDB 3mjh chain D Region: 55 - 69 Aligned: 15 Modelled: 15 Confidence: 20.9% Identity: 53% PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 Phyre2 PDB 2jm1 chain A Region: 21 - 59 Aligned: 39 Modelled: 39 Confidence: 20.7% Identity: 26% PDB header:metal binding protein Chain: A: PDB Molecule:transcriptional regulator atrx; PDBTitle: structures and chemical shift assignments for the add domain of the2 atrx protein Phyre2 PDB 2dzo chain D Region: 104 - 116 Aligned: 13 Modelled: 13 Confidence: 20.5% Identity: 31% PDB header:protein binding Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3 Phyre2 PDB 2gs5 chain A domain 1 Region: 132 - 160 Aligned: 21 Modelled: 27 Confidence: 19.5% Identity: 29% Fold: VC0467-like Superfamily: VC0467-like Family: VC0467-like Phyre2 PDB 2did chain A domain 1 Region: 46 - 64 Aligned: 19 Modelled: 19 Confidence: 19.1% Identity: 21% Fold: B-box zinc-binding domain Superfamily: B-box zinc-binding domain Family: B-box zinc-binding domain Phyre2 PDB 2ew0 chain A domain 1 Region: 127 - 160 Aligned: 26 Modelled: 34 Confidence: 19.0% Identity: 23% Fold: VC0467-like Superfamily: VC0467-like Family: VC0467-like Phyre2 PDB 3mhv chain C Region: 99 - 116 Aligned: 18 Modelled: 18 Confidence: 16.7% Identity: 33% PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1 Phyre2 PDB 2yrg chain A Region: 46 - 64 Aligned: 19 Modelled: 19 Confidence: 15.9% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5 Phyre2 PDB 3gl5 chain A Region: 53 - 59 Aligned: 7 Modelled: 7 Confidence: 15.2% Identity: 57% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869; PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor Phyre2 PDB 2ctd chain A domain 2 Region: 179 - 187 Aligned: 9 Modelled: 9 Confidence: 14.1% Identity: 67% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 1 c2v5iA_ 2 d2gzoa1 3 d2hafa1 4 c3kzqE_ 5 c2aj2A_ 6 c2in3A_ 7 d2do8a1 8 c1x31D_ 9 d2ct1a1 10 c2dvwB_ 11 c3mjhD_ 12 c2jm1A_ 13 c2dzoD_ 14 d2gs5a1 15 d2dida1 16 d2ew0a1 17 c3mhvC_ 18 c2yrgA_ 19 c3gl5A_ 20 d2ctda2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2v5iA_ 34.0 60 PDB header:viral protein Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7 PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus 2 d2gzoa1 28.3 31 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 3 d2hafa1 27.8 27 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 4 c3kzqE_ 26.0 37 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 5 c2aj2A_ 25.0 27 PDB header:unknown function Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467; PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8. 6 c2in3A_ 24.5 43 PDB header:isomerase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea 7 d2do8a1 23.9 23 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 8 c1x31D_ 23.8 19 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 9 d2ct1a1 21.6 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 10 c2dvwB_ 21.1 31 PDB header:cell cycle/protein-binding Chain: B: PDB Molecule:26s protease regulatory subunit 6b; PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome 11 c3mjhD_ 20.9 53 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 12 c2jm1A_ 20.7 26 PDB header:metal binding protein Chain: A: PDB Molecule:transcriptional regulator atrx; PDBTitle: structures and chemical shift assignments for the add domain of the2 atrx protein 13 c2dzoD_ 20.5 31 PDB header:protein binding Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3 14 d2gs5a1 19.5 29 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 15 d2dida1 19.1 21 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 16 d2ew0a1 19.0 23 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 17 c3mhvC_ 16.7 33 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1 18 c2yrgA_ 15.9 16 PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5 19 c3gl5A_ 15.2 57 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869; PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor 20 d2ctda2 14.1 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 21 d2ct7a1 not modelled 13.5 17 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 22 c2e5rA_ not modelled 13.2 26 PDB header:dna binding protein Chain: A: PDB Molecule:dystrobrevin alpha; PDBTitle: solution structure of the zz domain of dystrobrevin alpha2 (dystrobrevin-alpha) 23 c1rimA_ not modelled 13.1 50 PDB header:de novo protein Chain: A: PDB Molecule:e6apc2 peptide; PDBTitle: e6-binding zinc finger (e6apc2) 24 c1x4jA_ not modelled 13.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ring finger protein 38; PDBTitle: solution structure of ring finger in ring finger protein 38 25 c3bciA_ not modelled 12.1 38 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 26 c1rikA_ not modelled 12.0 50 PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1) 27 d1ibia2 not modelled 11.9 75 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 28 c2egmA_ not modelled 11.9 26 PDB header:transcription/metal binding protein Chain: A: PDB Molecule:tripartite motif-containing protein 41; PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41 29 d2yt9a2 not modelled 11.7 33 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 30 c2hr5B_ not modelled 11.7 13 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 31 d2djaa1 not modelled 11.6 30 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 32 c1yzxB_ not modelled 11.5 29 PDB header:transferase Chain: B: PDB Molecule:glutathione s-transferase kappa 1; PDBTitle: crystal structure of human kappa class glutathione2 transferase 33 c2imeA_ not modelled 11.4 29 PDB header:transferase Chain: A: PDB Molecule:2-hydroxychromene-2-carboxylate isomerase; PDBTitle: 2-hydroxychromene-2-carboxylate isomerase: a kappa class glutathione-2 s-transferase from pseudomonas putida 34 d2fc7a1 not modelled 11.3 23 Fold:RING/U-box Superfamily:RING/U-box Family:ZZ domain 35 d1xpna_ not modelled 11.2 43 Fold:Prealbumin-like Superfamily:Hypothetical protein PA1324 Family:Hypothetical protein PA1324 36 d2d8ua1 not modelled 11.2 26 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 37 c2d8uA_ not modelled 10.9 26 PDB header:ligase Chain: A: PDB Molecule:ubiquitin ligase trim63; PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein 38 d2ds5a1 not modelled 10.7 15 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 39 c1ovxB_ not modelled 10.7 15 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 40 c2yt5A_ not modelled 10.6 26 PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the phd domain of metal-response2 element-binding transcription factor 2 41 c3gmfA_ not modelled 10.6 43 PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans 42 c2wwaJ_ not modelled 10.4 36 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 43 d6rxna_ not modelled 10.3 23 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 44 d1dfxa2 not modelled 10.1 36 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Desulforedoxin 45 d1r4wa_ not modelled 9.9 29 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 46 d1x68a1 not modelled 9.4 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 47 d1iiza_ not modelled 9.4 21 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 48 c3alrA_ not modelled 9.3 43 PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos 49 c2e6rA_ not modelled 9.3 24 PDB header:dna binding protein Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d; PDBTitle: solution structure of the phd domain in smcy protein 50 c2difA_ not modelled 9.3 21 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 39; PDBTitle: one sequence two fold ? : miss fold of the zf-b-box domain2 from human tripartite motif protein 39 51 c2csvA_ not modelled 9.1 20 PDB header:signaling protein Chain: A: PDB Molecule:tripartite motif protein 29; PDBTitle: solution structure of the zf-b_box type2 domain of human2 tripartite motif protein trim29 isoform alpha 52 c3fz5C_ not modelled 9.1 0 PDB header:isomerase Chain: C: PDB Molecule:possible 2-hydroxychromene-2-carboxylate isomerase; PDBTitle: crystal structure of possible 2-hydroxychromene-2-carboxylate2 isomerase from rhodobacter sphaeroides 53 c3kp9A_ not modelled 8.8 18 PDB header:blood coagulation,oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase 54 c3c7mB_ not modelled 8.8 43 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 55 c2e6iA_ not modelled 8.8 44 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase itk/tsk; PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human 56 d1gd6a_ not modelled 8.7 21 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 57 c2ds8A_ not modelled 8.5 15 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 58 d1i9za_ not modelled 8.5 17 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 59 c2k5cA_ not modelled 8.4 28 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 60 d2nwia1 not modelled 8.4 23 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:AF1396-like 61 c3gn3B_ not modelled 8.4 43 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. 62 d1x6fa1 not modelled 8.4 33 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 63 d1dx8a_ not modelled 8.3 31 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 64 d1vq0a2 not modelled 8.2 30 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 65 d1wena_ not modelled 8.2 15 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain 66 c3ld0Q_ not modelled 7.9 30 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 67 d2csva1 not modelled 7.8 20 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 68 d1fkqa_ not modelled 7.8 20 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 69 c1ij2C_ not modelled 7.8 27 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 70 d1iu5a_ not modelled 7.7 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 71 d1vzya2 not modelled 7.6 20 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 72 d2dq5a1 not modelled 7.5 32 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 73 d1xjha_ not modelled 7.5 30 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 74 c2krkA_ not modelled 7.5 38 PDB header:protein binding Chain: A: PDB Molecule:26s protease regulatory subunit 8; PDBTitle: solution nmr structure of 26s protease regulatory subunit 82 from h.sapiens, northeast structural genomics consortium3 target target hr3102a 75 d2rdva_ not modelled 7.4 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 76 c3cegA_ not modelled 7.4 12 PDB header:ligase Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 6; PDBTitle: crystal structure of the ubc domain of baculoviral iap2 repeat-containing protein 6 77 c3ghaA_ not modelled 7.3 43 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) 78 c1ij2B_ not modelled 7.3 27 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 79 c3a44D_ not modelled 7.2 33 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 80 c2h51B_ not modelled 7.1 27 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-1; PDBTitle: crystal structure of human caspase-1 (glu390->asp and arg286->lys) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk) 81 d1m4ma_ not modelled 7.1 11 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 82 c3gn5B_ not modelled 7.0 21 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 83 d2dipa1 not modelled 7.0 24 Fold:RING/U-box Superfamily:RING/U-box Family:ZZ domain 84 d1ypze2 not modelled 6.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 85 d1h7va_ not modelled 6.8 31 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 86 d2gvia2 not modelled 6.6 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:FwdE C-terminal domain-like 87 c2c2zB_ not modelled 6.5 0 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-8 p10 subunit; PDBTitle: crystal structure of caspase-8 in complex with aza-peptide michael2 acceptor inhibitor 88 d2cota1 not modelled 6.5 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 89 d1lv3a_ not modelled 6.5 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 90 d2ewla1 not modelled 6.4 40 Fold:E7 C-terminal domain-like Superfamily:E7 C-terminal domain-like Family:E7 C-terminal domain-like 91 d1hxma2 not modelled 6.4 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 92 d1f6sa_ not modelled 6.3 17 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme 93 d1rb9a_ not modelled 6.3 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 94 c2bsjB_ not modelled 5.9 57 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein syct; PDBTitle: native crystal structure of the type iii secretion2 chaperone syct from yersinia enterocolitica 95 d1llmc2 not modelled 5.9 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 96 d1nh8a2 not modelled 5.9 32 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 97 c2ei5B_ not modelled 5.8 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ttha0061; PDBTitle: crystal structure of hypothetical protein(ttha0061) from thermus2 thermophilus 98 d1paaa_ not modelled 5.8 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 99 d1x6ea2 not modelled 5.8 63 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0