Phyre 2 Results for P31469

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P31469
Date | Thu Jan 5 11:47:58 GMT 2012
Unique Job ID | abf5369e4615f039

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2v5iA_
Top template information
PDB header:viral protein Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7 PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus
Confidence and coverage
Confidence: | 34.0% | Coverage: | 8%
15 residues ( 8% of your sequence) have been modelled with 34.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | Q | N | I | R | P | L | P | Q | F | K | Y | H | P | K | P | L | E | T | G | A | F | E | Q | D | K | T | V | E | C | D | C | C | E | Q | Q | T | S | V | Y | Y | S | G | P | F | Y | C | V | D | E | V | E | H | L | C | P | W | C | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | D | G | S | A | A | E | K | F | A | G | S | F | Q | D | D | A | S | I | E | G | V | E | F | E | Y | D | E | E | D | E | F | A | G | I | K | N | T | Y | P | D | E | M | L | K | E | L | V | E | R | T | P | G | Y | H | G | W | Q | Q | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | F | W | L | A | H | C | G | D | F | C | V | F | I | G | Y | V | G | W | N | D | I | K | D | R | L | D | E | F | A | N | L | E | E | D | C | E | N | F | G | I | R | N | S | D | L | A | K | C | L | Q | K | G | G | H | C | Q | G | Y | L | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | .
Sequence |  | R | C | L | H | C | G | K | L | R | L | W | G | D | F | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2v5iA_ |

### PDB 2v5i chain A

Region: 171 - 185
Aligned: 15
Modelled: 15
Confidence: 34.0%
Identity: 60%
PDB header:viral protein
Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7
PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus

Phyre2
2 |
| d2gzoa1 |

### PDB 2gzo chain A domain 1

Region: 127 - 160
Aligned: 26
Modelled: 34
Confidence: 28.3%
Identity: 31%
Fold: VC0467-like
Superfamily: VC0467-like
Family: VC0467-like

Phyre2
3 |
| d2hafa1 |

### PDB 2haf chain A domain 1

Region: 127 - 160
Aligned: 26
Modelled: 34
Confidence: 27.8%
Identity: 27%
Fold: VC0467-like
Superfamily: VC0467-like
Family: VC0467-like

Phyre2
4 |
| c3kzqE_ |

### PDB 3kzq chain E

Region: 53 - 117
Aligned: 27
Modelled: 27
Confidence: 26.0%
Identity: 37%
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:putative uncharacterized protein vp2116;
PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633

Phyre2
5 |
| c2aj2A_ |

### PDB 2aj2 chain A

Region: 127 - 160
Aligned: 26
Modelled: 34
Confidence: 25.0%
Identity: 27%
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467;
PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8.

Phyre2
6 |
| c2in3A_ |

### PDB 2in3 chain A

Region: 53 - 59
Aligned: 7
Modelled: 7
Confidence: 24.5%
Identity: 43%
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea

Phyre2
7 |
| d2do8a1 |

### PDB 2do8 chain A domain 1

Region: 127 - 160
Aligned: 26
Modelled: 34
Confidence: 23.9%
Identity: 23%
Fold: VC0467-like
Superfamily: VC0467-like
Family: VC0467-like

Phyre2
8 |
| c1x31D_ |

### PDB 1x31 chain D

Region: 56 - 123
Aligned: 53
Modelled: 68
Confidence: 23.8%
Identity: 19%
PDB header:oxidoreductase
Chain: D: PDB Molecule:sarcosine oxidase delta subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96

Phyre2
9 |
| d2ct1a1 |

### PDB 2ct1 chain A domain 1

Region: 179 - 189
Aligned: 11
Modelled: 11
Confidence: 21.6%
Identity: 36%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2
10 |
| c2dvwB_ |

### PDB 2dvw chain B

Region: 104 - 116
Aligned: 13
Modelled: 13
Confidence: 21.1%
Identity: 31%
PDB header:cell cycle/protein-binding
Chain: B: PDB Molecule:26s protease regulatory subunit 6b;
PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome

Phyre2
11 |
| c3mjhD_ |

### PDB 3mjh chain D

Region: 55 - 69
Aligned: 15
Modelled: 15
Confidence: 20.9%
Identity: 53%
PDB header:protein transport
Chain: D: PDB Molecule:early endosome antigen 1;
PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1

Phyre2
12 |
| c2jm1A_ |

### PDB 2jm1 chain A

Region: 21 - 59
Aligned: 39
Modelled: 39
Confidence: 20.7%
Identity: 26%
PDB header:metal binding protein
Chain: A: PDB Molecule:transcriptional regulator atrx;
PDBTitle: structures and chemical shift assignments for the add domain of the2 atrx protein

Phyre2
13 |
| c2dzoD_ |

### PDB 2dzo chain D

Region: 104 - 116
Aligned: 13
Modelled: 13
Confidence: 20.5%
Identity: 31%
PDB header:protein binding
Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog;
PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3

Phyre2
14 |
| d2gs5a1 |

### PDB 2gs5 chain A domain 1

Region: 132 - 160
Aligned: 21
Modelled: 27
Confidence: 19.5%
Identity: 29%
Fold: VC0467-like
Superfamily: VC0467-like
Family: VC0467-like

Phyre2
15 |
| d2dida1 |

### PDB 2did chain A domain 1

Region: 46 - 64
Aligned: 19
Modelled: 19
Confidence: 19.1%
Identity: 21%
Fold: B-box zinc-binding domain
Superfamily: B-box zinc-binding domain
Family: B-box zinc-binding domain

Phyre2
16 |
| d2ew0a1 |

### PDB 2ew0 chain A domain 1

Region: 127 - 160
Aligned: 26
Modelled: 34
Confidence: 19.0%
Identity: 23%
Fold: VC0467-like
Superfamily: VC0467-like
Family: VC0467-like

Phyre2
17 |
| c3mhvC_ |

### PDB 3mhv chain C

Region: 99 - 116
Aligned: 18
Modelled: 18
Confidence: 16.7%
Identity: 33%
PDB header:protein transport
Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4;
PDBTitle: crystal structure of vps4 and vta1

Phyre2
18 |
| c2yrgA_ |

### PDB 2yrg chain A

Region: 46 - 64
Aligned: 19
Modelled: 19
Confidence: 15.9%
Identity: 16%
PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5

Phyre2
19 |
| c3gl5A_ |

### PDB 3gl5 chain A

Region: 53 - 59
Aligned: 7
Modelled: 7
Confidence: 15.2%
Identity: 57%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869;
PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor

Phyre2
20 |
| d2ctda2 |

### PDB 2ctd chain A domain 2

Region: 179 - 187
Aligned: 9
Modelled: 9
Confidence: 14.1%
Identity: 67%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2v5iA_ |
|  | 34.0 | 60 | PDB header:viral protein Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7 PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus
2 | d2gzoa1 |
|  | 28.3 | 31 | Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like
3 | d2hafa1 |
|  | 27.8 | 27 | Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like
4 | c3kzqE_ |
|  | 26.0 | 37 | PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633
5 | c2aj2A_ |
|  | 25.0 | 27 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467; PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8.
6 | c2in3A_ |
|  | 24.5 | 43 | PDB header:isomerase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea
7 | d2do8a1 |
|  | 23.9 | 23 | Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like
8 | c1x31D_ |
|  | 23.8 | 19 | PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
9 | d2ct1a1 |
|  | 21.6 | 36 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
10 | c2dvwB_ |
|  | 21.1 | 31 | PDB header:cell cycle/protein-binding Chain: B: PDB Molecule:26s protease regulatory subunit 6b; PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome
11 | c3mjhD_ |
|  | 20.9 | 53 | PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1
12 | c2jm1A_ |
|  | 20.7 | 26 | PDB header:metal binding protein Chain: A: PDB Molecule:transcriptional regulator atrx; PDBTitle: structures and chemical shift assignments for the add domain of the2 atrx protein
13 | c2dzoD_ |
|  | 20.5 | 31 | PDB header:protein binding Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3
14 | d2gs5a1 |
|  | 19.5 | 29 | Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like
15 | d2dida1 |
|  | 19.1 | 21 | Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain
16 | d2ew0a1 |
|  | 19.0 | 23 | Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like
17 | c3mhvC_ |
|  | 16.7 | 33 | PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1
18 | c2yrgA_ |
|  | 15.9 | 16 | PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5
19 | c3gl5A_ |
|  | 15.2 | 57 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869; PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor
20 | d2ctda2 |
|  | 14.1 | 67 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
21 | d2ct7a1 |
| not modelled | 13.5 | 17 | Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain
22 | c2e5rA_ |
| not modelled | 13.2 | 26 | PDB header:dna binding protein Chain: A: PDB Molecule:dystrobrevin alpha; PDBTitle: solution structure of the zz domain of dystrobrevin alpha2 (dystrobrevin-alpha)
23 | c1rimA_ |
| not modelled | 13.1 | 50 | PDB header:de novo protein Chain: A: PDB Molecule:e6apc2 peptide; PDBTitle: e6-binding zinc finger (e6apc2)
24 | c1x4jA_ |
| not modelled | 13.0 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ring finger protein 38; PDBTitle: solution structure of ring finger in ring finger protein 38
25 | c3bciA_ |
| not modelled | 12.1 | 38 | PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba
26 | c1rikA_ |
| not modelled | 12.0 | 50 | PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1)
27 | d1ibia2 |
| not modelled | 11.9 | 75 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
28 | c2egmA_ |
| not modelled | 11.9 | 26 | PDB header:transcription/metal binding protein Chain: A: PDB Molecule:tripartite motif-containing protein 41; PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41
29 | d2yt9a2 |
| not modelled | 11.7 | 33 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
30 | c2hr5B_ |
| not modelled | 11.7 | 13 | PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
31 | d2djaa1 |
| not modelled | 11.6 | 30 | Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain
32 | c1yzxB_ |
| not modelled | 11.5 | 29 | PDB header:transferase Chain: B: PDB Molecule:glutathione s-transferase kappa 1; PDBTitle: crystal structure of human kappa class glutathione2 transferase
33 | c2imeA_ |
| not modelled | 11.4 | 29 | PDB header:transferase Chain: A: PDB Molecule:2-hydroxychromene-2-carboxylate isomerase; PDBTitle: 2-hydroxychromene-2-carboxylate isomerase: a kappa class glutathione-2 s-transferase from pseudomonas putida
34 | d2fc7a1 |
| not modelled | 11.3 | 23 | Fold:RING/U-box Superfamily:RING/U-box Family:ZZ domain
35 | d1xpna_ |
| not modelled | 11.2 | 43 | Fold:Prealbumin-like Superfamily:Hypothetical protein PA1324 Family:Hypothetical protein PA1324
36 | d2d8ua1 |
| not modelled | 11.2 | 26 | Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain
37 | c2d8uA_ |
| not modelled | 10.9 | 26 | PDB header:ligase Chain: A: PDB Molecule:ubiquitin ligase trim63; PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein
38 | d2ds5a1 |
| not modelled | 10.7 | 15 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain
39 | c1ovxB_ |
| not modelled | 10.7 | 15 | PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer
40 | c2yt5A_ |
| not modelled | 10.6 | 26 | PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the phd domain of metal-response2 element-binding transcription factor 2
41 | c3gmfA_ |
| not modelled | 10.6 | 43 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans
42 | c2wwaJ_ |
| not modelled | 10.4 | 36 | PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome
43 | d6rxna_ |
| not modelled | 10.3 | 23 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
44 | d1dfxa2 |
| not modelled | 10.1 | 36 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Desulforedoxin
45 | d1r4wa_ |
| not modelled | 9.9 | 29 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like
46 | d1x68a1 |
| not modelled | 9.4 | 23 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
47 | d1iiza_ |
| not modelled | 9.4 | 21 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
48 | c3alrA_ |
| not modelled | 9.3 | 43 | PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos
49 | c2e6rA_ |
| not modelled | 9.3 | 24 | PDB header:dna binding protein Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d; PDBTitle: solution structure of the phd domain in smcy protein
50 | c2difA_ |
| not modelled | 9.3 | 21 | PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 39; PDBTitle: one sequence two fold ? : miss fold of the zf-b-box domain2 from human tripartite motif protein 39
51 | c2csvA_ |
| not modelled | 9.1 | 20 | PDB header:signaling protein Chain: A: PDB Molecule:tripartite motif protein 29; PDBTitle: solution structure of the zf-b_box type2 domain of human2 tripartite motif protein trim29 isoform alpha
52 | c3fz5C_ |
| not modelled | 9.1 | 0 | PDB header:isomerase Chain: C: PDB Molecule:possible 2-hydroxychromene-2-carboxylate isomerase; PDBTitle: crystal structure of possible 2-hydroxychromene-2-carboxylate2 isomerase from rhodobacter sphaeroides
53 | c3kp9A_ |
| not modelled | 8.8 | 18 | PDB header:blood coagulation,oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
54 | c3c7mB_ |
| not modelled | 8.8 | 43 | PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl
55 | c2e6iA_ |
| not modelled | 8.8 | 44 | PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase itk/tsk; PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human
56 | d1gd6a_ |
| not modelled | 8.7 | 21 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
57 | c2ds8A_ |
| not modelled | 8.5 | 15 | PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex
58 | d1i9za_ |
| not modelled | 8.5 | 17 | Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5)
59 | c2k5cA_ |
| not modelled | 8.4 | 28 | PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385
60 | d2nwia1 |
| not modelled | 8.4 | 23 | Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:AF1396-like
61 | c3gn3B_ |
| not modelled | 8.4 | 43 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution.
62 | d1x6fa1 |
| not modelled | 8.4 | 33 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
63 | d1dx8a_ |
| not modelled | 8.3 | 31 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
64 | d1vq0a2 |
| not modelled | 8.2 | 30 | Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like
65 | d1wena_ |
| not modelled | 8.2 | 15 | Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain
66 | c3ld0Q_ |
| not modelled | 7.9 | 30 | PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions
67 | d2csva1 |
| not modelled | 7.8 | 20 | Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain
68 | d1fkqa_ |
| not modelled | 7.8 | 20 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
69 | c1ij2C_ |
| not modelled | 7.8 | 27 | PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position
70 | d1iu5a_ |
| not modelled | 7.7 | 27 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
71 | d1vzya2 |
| not modelled | 7.6 | 20 | Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like
72 | d2dq5a1 |
| not modelled | 7.5 | 32 | Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain
73 | d1xjha_ |
| not modelled | 7.5 | 30 | Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like
74 | c2krkA_ |
| not modelled | 7.5 | 38 | PDB header:protein binding Chain: A: PDB Molecule:26s protease regulatory subunit 8; PDBTitle: solution nmr structure of 26s protease regulatory subunit 82 from h.sapiens, northeast structural genomics consortium3 target target hr3102a
75 | d2rdva_ |
| not modelled | 7.4 | 27 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
76 | c3cegA_ |
| not modelled | 7.4 | 12 | PDB header:ligase Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 6; PDBTitle: crystal structure of the ubc domain of baculoviral iap2 repeat-containing protein 6
77 | c3ghaA_ |
| not modelled | 7.3 | 43 | PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced)
78 | c1ij2B_ |
| not modelled | 7.3 | 27 | PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position
79 | c3a44D_ |
| not modelled | 7.2 | 33 | PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form
80 | c2h51B_ |
| not modelled | 7.1 | 27 | PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-1; PDBTitle: crystal structure of human caspase-1 (glu390->asp and arg286->lys) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk)
81 | d1m4ma_ |
| not modelled | 7.1 | 11 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
82 | c3gn5B_ |
| not modelled | 7.0 | 21 | PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
83 | d2dipa1 |
| not modelled | 7.0 | 24 | Fold:RING/U-box Superfamily:RING/U-box Family:ZZ domain
84 | d1ypze2 |
| not modelled | 6.9 | 17 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
85 | d1h7va_ |
| not modelled | 6.8 | 31 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
86 | d2gvia2 |
| not modelled | 6.6 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:FwdE C-terminal domain-like
87 | c2c2zB_ |
| not modelled | 6.5 | 0 | PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-8 p10 subunit; PDBTitle: crystal structure of caspase-8 in complex with aza-peptide michael2 acceptor inhibitor
88 | d2cota1 |
| not modelled | 6.5 | 50 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
89 | d1lv3a_ |
| not modelled | 6.5 | 26 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG
90 | d2ewla1 |
| not modelled | 6.4 | 40 | Fold:E7 C-terminal domain-like Superfamily:E7 C-terminal domain-like Family:E7 C-terminal domain-like
91 | d1hxma2 |
| not modelled | 6.4 | 22 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
92 | d1f6sa_ |
| not modelled | 6.3 | 17 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
93 | d1rb9a_ |
| not modelled | 6.3 | 28 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
94 | c2bsjB_ |
| not modelled | 5.9 | 57 | PDB header:chaperone Chain: B: PDB Molecule:chaperone protein syct; PDBTitle: native crystal structure of the type iii secretion2 chaperone syct from yersinia enterocolitica
95 | d1llmc2 |
| not modelled | 5.9 | 50 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
96 | d1nh8a2 |
| not modelled | 5.9 | 32 | Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
97 | c2ei5B_ |
| not modelled | 5.8 | 27 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ttha0061; PDBTitle: crystal structure of hypothetical protein(ttha0061) from thermus2 thermophilus
98 | d1paaa_ |
| not modelled | 5.8 | 25 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
99 | d1x6ea2 |
| not modelled | 5.8 | 63 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0