Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	I	L	A	I	D	T	A	T	E	A	C	S	V	A	L	W	N	D	G	T	V	N	A	H	F	E	L	C	P	R	E	H	T	Q	R	I	L	P	M	V	Q	D	I	L	T	T	S	G	T	S	L	T	D	I	N	A	L	A
Secondary structure
SS confidence
Disorder		?	?																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	G	R	G	P	G	S	F	T	G	V	R	I	G	I	G	I	A	Q	G	L	A	L	G	A	E	L	P	M	I	G	V	S	T	L	M	T	M	A	Q	G	A	W	R	K	N	G	A	T	R	V	L	A	A	I	D	A	R	M	G
Secondary structure
SS confidence
Disorder																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	V	Y	W	A	E	Y	Q	R	D	E	N	G	I	W	H	G	E	E	T	E	A	V	L	K	P	E	I	V	H	E	R	M	Q	Q	L	S	G	E	W	V	T	V	G	T	G	W	Q	A	W	P	D	L	G	K	E	S	G	L	V
Secondary structure
SS confidence
Disorder													?	?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence		L	R	D	G	E	V	L	L	P	A	A	E	D	M	L	P	I	A	C	Q	M	F	A	E	G	K	T	V	A	V	E	H	A	E	P	V	Y	L	R	N	N	V	A	W	K	K	L	P	G	K	E
Secondary structure
SS confidence
Disorder																																														?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1okj chain B Region: 1 - 218 Aligned: 218 Modelled: 218 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protease yeaz; PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma" Phyre2 PDB 3r6m chain D Region: 2 - 212 Aligned: 211 Modelled: 211 Confidence: 100.0% Identity: 55% PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz Phyre2 PDB 2a6a chain B Region: 1 - 214 Aligned: 187 Modelled: 192 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution Phyre2 PDB 1okj chain A domain 1 Region: 2 - 107 Aligned: 106 Modelled: 106 Confidence: 100.0% Identity: 100% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 2a6a chain A domain 1 Region: 1 - 104 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 21% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 2ivo chain C Region: 1 - 228 Aligned: 222 Modelled: 228 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Phyre2 PDB 3eno chain B Region: 1 - 227 Aligned: 221 Modelled: 227 Confidence: 99.9% Identity: 22% PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 Phyre2 PDB 3en9 chain B Region: 1 - 206 Aligned: 199 Modelled: 206 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein Phyre2 PDB 1okj chain A domain 2 Region: 108 - 217 Aligned: 110 Modelled: 110 Confidence: 99.7% Identity: 100% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 1hux chain A Region: 1 - 124 Aligned: 109 Modelled: 109 Confidence: 97.5% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 2a6a chain A domain 2 Region: 111 - 220 Aligned: 87 Modelled: 89 Confidence: 97.3% Identity: 33% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 1saz chain A domain 1 Region: 1 - 93 Aligned: 92 Modelled: 93 Confidence: 96.4% Identity: 23% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Acetokinase-like Phyre2 PDB 1saz chain A Region: 1 - 66 Aligned: 66 Modelled: 66 Confidence: 95.8% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima Phyre2 PDB 1hjr chain A Region: 3 - 97 Aligned: 95 Modelled: 95 Confidence: 94.7% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: RuvC resolvase Phyre2 PDB 2aa4 chain B Region: 1 - 101 Aligned: 97 Modelled: 101 Confidence: 94.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium Phyre2 PDB 1zc6 chain A domain 1 Region: 1 - 64 Aligned: 64 Modelled: 64 Confidence: 94.0% Identity: 23% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 2iik chain A Region: 31 - 114 Aligned: 84 Modelled: 84 Confidence: 93.6% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, peroxisomal; PDBTitle: crystal structure of human peroxisomal acetyl-coa acyl transferase 12 (acaa1) Phyre2 PDB 2wua chain A Region: 35 - 114 Aligned: 80 Modelled: 80 Confidence: 93.6% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:acetoacetyl coa thiolase; PDBTitle: structure of the peroxisomal 3-ketoacyl-coa thiolase from2 sunflower Phyre2 PDB 2qm1 chain D Region: 2 - 115 Aligned: 114 Modelled: 114 Confidence: 93.5% Identity: 15% PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis Phyre2 PDB 1iv0 chain A Region: 1 - 93 Aligned: 86 Modelled: 93 Confidence: 93.5% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Putative Holliday junction resolvase RuvX Phyre2 1 c1okjB_ 2 c3r6mD_ 3 c2a6aB_ 4 d1okja1 5 d2a6aa1 6 c2ivoC_ 7 c3enoB_ 8 c3en9B_ 9 d1okja2 10 d1huxa_ 11 d2a6aa2 12 d1saza1 13 c1sazA_ 14 d1hjra_ 15 c2aa4B_ 16 d1zc6a1 17 c2iikA_ 18 c2wuaA_ 19 c2qm1D_ 20 d1iv0a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1okjB_ 100.0 100 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protease yeaz; PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma" 2 c3r6mD_ 100.0 55 PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz 3 c2a6aB_ 100.0 26 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution 4 d1okja1 100.0 100 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 5 d2a6aa1 100.0 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 6 c2ivoC_ 99.9 21 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 7 c3enoB_ 99.9 22 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 8 c3en9B_ 99.9 15 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 9 d1okja2 99.7 100 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 10 d1huxa_ 97.5 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 11 d2a6aa2 97.3 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 12 d1saza1 96.4 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 13 c1sazA_ 95.8 17 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 14 d1hjra_ 94.7 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 15 c2aa4B_ 94.0 19 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 16 d1zc6a1 94.0 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 17 c2iikA_ 93.6 11 PDB header:transferase Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, peroxisomal; PDBTitle: crystal structure of human peroxisomal acetyl-coa acyl transferase 12 (acaa1) 18 c2wuaA_ 93.6 11 PDB header:transferase Chain: A: PDB Molecule:acetoacetyl coa thiolase; PDBTitle: structure of the peroxisomal 3-ketoacyl-coa thiolase from2 sunflower 19 c2qm1D_ 93.5 15 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 20 d1iv0a_ 93.5 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 21 d1ulqa1 not modelled 93.4 8 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 22 c3goaA_ not modelled 92.9 11 PDB header:transferase Chain: A: PDB Molecule:3-ketoacyl-coa thiolase; PDBTitle: crystal structure of the salmonella typhimurium fada 3-2 ketoacyl-coa thiolase 23 d1m3ka1 not modelled 92.8 13 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 24 d1vhxa_ not modelled 92.6 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 25 d1nu0a_ not modelled 92.2 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 26 c1ulqD_ not modelled 91.8 8 PDB header:transferase Chain: D: PDB Molecule:putative acetyl-coa acetyltransferase; PDBTitle: crystal structure of tt0182 from thermus thermophilus hb8 27 c3gg4B_ not modelled 91.7 16 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 28 d2a9va1 not modelled 91.7 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 29 c2vu2D_ not modelled 91.4 13 PDB header:transferase Chain: D: PDB Molecule:acetyl-coa acetyltransferase; PDBTitle: biosynthetic thiolase from z. ramigera. complex with s-2 pantetheine-11-pivalate. 30 c2zf5O_ not modelled 91.2 19 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 31 c3hz6A_ not modelled 90.6 23 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 32 c3ss6B_ not modelled 90.4 10 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa acetyltransferase; PDBTitle: crystal structure of the bacillus anthracis acetyl-coa2 acetyltransferase 33 d1wdkc1 not modelled 88.7 12 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 34 d1afwa1 not modelled 88.6 10 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 35 c2ibyD_ not modelled 88.4 15 PDB header:transferase Chain: D: PDB Molecule:acetyl-coa acetyltransferase; PDBTitle: crystallographic and kinetic studies of human mitochondrial2 acetoacetyl-coa thiolase (t2): the importance of potassium and3 chloride for its structure and function 36 c1z6rC_ not modelled 88.4 12 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 37 c3ezwD_ not modelled 88.3 22 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 38 c1zc6A_ not modelled 88.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 39 c2dpnB_ not modelled 88.0 27 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 40 c2c7yB_ not modelled 88.0 8 PDB header:transferase Chain: B: PDB Molecule:3-ketoacyl-coa thiolase 2; PDBTitle: plant enzyme 41 c1glbG_ not modelled 86.0 22 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 42 c2d3mA_ not modelled 85.9 12 PDB header:transferase Chain: A: PDB Molecule:pentaketide chromone synthase; PDBTitle: pentaketide chromone synthase complexed with coenzyme a 43 c1keeH_ not modelled 85.6 19 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 44 d1ka9h_ not modelled 85.2 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 45 d1a9xb2 not modelled 85.2 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 46 c1ee0A_ not modelled 85.1 10 PDB header:transferase Chain: A: PDB Molecule:2-pyrone synthase; PDBTitle: 2-pyrone synthase complexed with acetoacetyl-coa 47 c3eo3B_ not modelled 85.0 14 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 48 c3g25B_ not modelled 84.9 23 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 49 d2p3ra1 not modelled 84.9 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 50 c2ap1A_ not modelled 84.8 9 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 51 c3flcX_ not modelled 84.5 20 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 52 c3tsuA_ not modelled 84.2 14 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 53 c2d4wA_ not modelled 84.2 25 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 54 c2h3gX_ not modelled 83.6 15 PDB header:biosynthetic protein Chain: X: PDB Molecule:biosynthetic protein; PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis 55 d1g99a1 not modelled 82.6 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 56 d3eeqa1 not modelled 82.4 10 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 57 c1afwB_ not modelled 82.3 14 PDB header:thiolase Chain: B: PDB Molecule:3-ketoacetyl-coa thiolase; PDBTitle: the 1.8 angstrom crystal structure of the dimeric2 peroxisomal thiolase of saccharomyces cerevisiae 58 d3bzka5 not modelled 81.9 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 59 d1u6ea2 not modelled 81.8 9 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 60 c3ifrB_ not modelled 81.3 20 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 61 d1bi5a1 not modelled 80.8 16 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 62 c2qnxA_ not modelled 80.4 15 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: crystal structure of the complex between the mycobacterium beta-2 ketoacyl-acyl carrier protein synthase iii (fabh) and 11-3 [(decyloxycarbonyl)dithio]-undecanoic acid 63 c2e2pA_ not modelled 80.0 13 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 64 c3eeqB_ not modelled 79.7 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus 65 d1ee0a2 not modelled 79.3 13 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 66 c2w40C_ not modelled 79.0 18 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 67 d1ub7a2 not modelled 79.0 9 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 68 d2ch5a2 not modelled 78.7 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 69 c2p0uB_ not modelled 78.2 15 PDB header:transferase Chain: B: PDB Molecule:stilbenecarboxylate synthase 2; PDBTitle: crystal structure of marchantia polymorpha stilbenecarboxylate2 synthase 2 (stcs2) 70 c3djcA_ not modelled 77.7 13 PDB header:transferase Chain: A: PDB Molecule:type iii pantothenate kinase; PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila 71 d1mzja2 not modelled 77.5 18 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 72 c2d3tC_ not modelled 77.4 12 PDB header:lyase, oxidoreductase/transferase Chain: C: PDB Molecule:3-ketoacyl-coa thiolase; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v 73 c1u0mA_ not modelled 77.3 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative polyketide synthase; PDBTitle: crystal structure of 1,3,6,8-tetrahydroxynaphthalene synthase (thns)2 from streptomyces coelicolor a3(2): a bacterial type iii polyketide3 synthase (pks) provides insights into enzymatic control of reactive4 polyketide intermediates 74 d1u0ma2 not modelled 77.3 9 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 75 c2cgkB_ not modelled 76.9 11 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 76 d1u0ua2 not modelled 76.1 10 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 77 c3i8bA_ not modelled 76.1 25 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 78 c2ch5D_ not modelled 75.7 17 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 79 c3aleB_ not modelled 75.1 16 PDB header:transferase Chain: B: PDB Molecule:os07g0271500 protein; PDBTitle: a type iii polyketide synthase that produces diarylheptanoid 80 d1hnja2 not modelled 74.3 10 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 81 c1z05A_ not modelled 73.2 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 82 d1k9vf_ not modelled 72.9 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 83 c3euoB_ not modelled 71.2 10 PDB header:transferase Chain: B: PDB Molecule:type iii pentaketide synthase; PDBTitle: crystal structure of a fungal type iii polyketide synthase,2 oras 84 d1mzja1 not modelled 70.9 12 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 85 d1bi5a2 not modelled 70.8 21 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 86 c3oitB_ not modelled 70.6 13 PDB header:transferase Chain: B: PDB Molecule:os07g0271500 protein; PDBTitle: crystal structure of curcuminoid synthase cus from oryza sativa 87 c3fk5A_ not modelled 70.0 13 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-synthase iii; PDBTitle: crystal structure of 3-oxoacyl-(acyl carrier protein)2 synthase iii, fabh (xoo4209) from xanthomonas oryzae pv.3 oryzae kacc10331 88 c3il3A_ not modelled 69.1 6 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: structure of haemophilus influenzae fabh 89 d1z6ra2 not modelled 69.1 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 90 c2ad5B_ not modelled 69.1 28 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 91 c3il5D_ not modelled 69.0 11 PDB header:transferase Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: structure of e. faecalis fabh in complex with 2-({4-bromo-3-2 [(diethylamino)sulfonyl]benzoyl}amino)benzoic acid 92 c1xetD_ not modelled 68.6 15 PDB header:transferase Chain: D: PDB Molecule:dihydropinosylvin synthase; PDBTitle: crystal structure of stilbene synthase from pinus2 sylvestris, complexed with methylmalonyl coa 93 c3nvaB_ not modelled 68.5 28 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 94 c1vcnA_ not modelled 67.9 24 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 95 c3ov3A_ not modelled 66.6 19 PDB header:transferase Chain: A: PDB Molecule:curcumin synthase; PDBTitle: g211f mutant of curcumin synthase 1 from curcuma longa 96 d1z05a3 not modelled 66.3 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 97 c3e1hA_ not modelled 65.6 12 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a type iii polyketide synthase2 pksiiinc from neurospora crassa 98 c1tqyD_ not modelled 65.1 14 PDB header:transferase Chain: D: PDB Molecule:actinorhodin polyketide putative beta-ketoacyl synthase 2; PDBTitle: the actinorhodin ketosynthase/chain length factor 99 c1cmlA_ not modelled 64.9 12 PDB header:transferase Chain: A: PDB Molecule:protein (chalcone synthase); PDBTitle: chalcone synthase from alfalfa complexed with malonyl-coa 100 c2gyoB_ not modelled 64.5 6 PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: methanethiol-cys 112 inhibition complex of e. coli ketoacyl synthase2 iii (fabh) and coenzyme a 101 c1e5mA_ not modelled 64.3 18 PDB header:condensing enzyme Chain: A: PDB Molecule:beta ketoacyl acyl carrier protein synthase ii; PDBTitle: beta ketoacyl acyl carrier protein synthase ii (kasii) from2 synechocystis sp. 102 d3bexa1 not modelled 63.7 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 103 d1ub7a1 not modelled 62.0 16 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 104 c2h84A_ not modelled 61.9 15 PDB header:biosynthetic protein, transferase Chain: A: PDB Molecule:steely1; PDBTitle: crystal structure of the c-terminal type iii polyketide synthase (pks2 iii) domain of 'steely1' (a type i/iii pks hybrid from dictyostelium) 105 d2ewsa1 not modelled 61.4 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 106 d1u0ua1 not modelled 61.3 14 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 107 d1afwa2 not modelled 61.3 14 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 108 c3gbtA_ not modelled 61.0 20 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 109 d1wdkc2 not modelled 60.9 22 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 110 c2ebdB_ not modelled 60.5 9 PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase iii2 from aquifex aeolicus vf5 111 c3uowB_ not modelled 60.4 19 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 112 c1mzjB_ not modelled 60.1 15 PDB header:transferase Chain: B: PDB Molecule:beta-ketoacylsynthase iii; PDBTitle: crystal structure of the priming beta-ketosynthase from the2 r1128 polyketide biosynthetic pathway 113 c1jvnB_ not modelled 59.5 17 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 114 d1qdlb_ not modelled 59.0 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 115 c3s3lB_ not modelled 58.6 9 PDB header:transferase Chain: B: PDB Molecule:cerj; PDBTitle: crystal structure of cerj from streptomyces tendae 116 c1zowB_ not modelled 58.5 10 PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase iii; PDBTitle: crystal structure of s. aureus fabh, beta-ketoacyl carrier protein2 synthase iii 117 d1i1qb_ not modelled 57.8 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 118 c2w7tA_ not modelled 56.7 24 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 119 d2aa4a1 not modelled 56.7 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 120 d2ap1a2 not modelled 56.7 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0