Job Description P0A6P5 Confidence 99.40% Date Thu Jan 5 11:03:38 GMT 2012 Rank 250 Aligned Residues 157 % Identity 22% Template c2il1A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rab12; PDBTitle: crystal structure of a predicted human gtpase in complex with gdp Resolution 2.10 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	S	L	P	I	K	L	A	I	V	G	R	P	N	V	G	K	S	T	L	T	N	R	I	L	G	E	E	R	V	V	V	Y	D	M	P	G	T	T	R	D	S	I	Y	I	P	M	E	R	D	G	R	E	Y	V	L	I	D	T	A	G	V	R	K	R	G	K	I	T	D	A	V	E	K	F	S	V	I	K
Query Conservation
Alig confidence																													.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template Sequence		P	A	D	F	K	L	Q	V	I	I	I	G	S	R	G	V	G	K	T	S	L	M	E	R	F	T	D	.	.	.	.	.	.	.	S	T	V	G	V	D	F	K	I	K	T	V	E	L	R	G	K	K	I	R	L	Q	I	W	D	T	A	G	Q	E	R	F	N	S	I	T	S	A	Y	Y	.	.	.	.	.	.
Template Known Secondary structure				S										S	T	T	S	S											.	.	.	.	.	.	.			T	T											T	T													S	G	G	G									.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160								.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		T	L	Q	A	I	E	D	A	N	V	V	M	L	V	I	D	A	R	E	G	I	S	D	Q	D	L	S	L	L	G	F	I	L	N	S	.	.	.	.	G	R	S	L	V	I	V	V	N	K	W	D	G	L	S	Q	E	V	K	E	Q	V	K	E	T	L	D	F	R	L	G	F	I	D	F	A	R	V	H	F	I
Query Conservation																																					.	.	.	.
Alig confidence		.	.	.	.	.																															.	.	.	.																		.	.
Template Conservation		.	.	.	.	.																																																				.	.
Template Sequence		.	.	.	.	.	R	S	A	K	G	I	I	L	V	Y	D	I	T	K	K	E	T	F	D	D	L	P	K	W	M	K	M	I	D	K	Y	A	S	E	D	A	E	L	L	L	V	G	N	K	L	D	C	E	T	D	R	.	.	E	I	T	R	Q	Q	G	E	K	F	A	Q	Q	I	T	G	M	R	F	C	E	A
Template Known Secondary structure		.	.	.	.	.				S								T	T							T												S		T	T										G	G	G	G	G	G		.	.		S											T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.																																																				.	.
Template SS confidence
							209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	H	G	S	G	V	G	N	L	F	E	S	V	R	E	A	Y	D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	K	D	N	F	N	V	D	E	I	F	L	K	L	V	D	D	I	L	K
Template Known Secondary structure		B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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