Email l.a.kelley@imperial.ac.uk Description P0A6W5 Date Wed Jan 25 15:20:16 GMT 2012 Unique Job ID a4d97c8714225dbd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2p4vA_ 100.0 35 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 2 c1grjA_ 100.0 100 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 3 c2etnA_ 100.0 26 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 4 c3bmbB_ 100.0 25 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 5 c2pn0D_ 100.0 29 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 6 d1grja1 99.9 100 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 7 d2f23a1 99.9 26 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 8 d2f23a2 99.9 28 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 9 d1grja2 99.9 100 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 10 d2etna2 99.9 28 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 11 c3gtyX_ 95.2 22 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 12 d1t11a3 88.4 11 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 13 d1w26a3 86.9 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 c1w26B_ 82.9 16 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 15 c1t11A_ 79.0 12 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 16 d1krha1 78.6 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 17 d1l1pa_ 73.8 16 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 18 d1qx4a1 63.5 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 19 d1ndha1 59.5 8 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 20 d2cnda1 58.3 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 21 c1zeqX_ not modelled 47.4 7 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 22 c2kw8A_ not modelled 45.6 18 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase 23 d1e32a3 not modelled 45.5 21 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 24 c2gpjA_ not modelled 43.9 17 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 25 c2kfwA_ not modelled 41.9 21 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 26 d1tvca1 not modelled 41.8 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 27 d1umka1 not modelled 41.6 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 28 c2dq0A_ not modelled 40.1 19 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog 29 c3fn5B_ not modelled 39.3 10 PDB header:hydrolase Chain: B: PDB Molecule:sortase a; PDBTitle: crystal structure of sortase a (spy1154) from streptococcus2 pyogenes serotype m1 strain sf370 30 c3shwA_ not modelled 38.5 19 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 31 c3g5oA_ not modelled 38.5 26 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 32 d1hxva_ not modelled 37.3 8 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 33 c1hxvA_ not modelled 37.3 8 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 34 d1t2wa_ not modelled 36.2 11 Fold:Sortase Superfamily:Sortase Family:Sortase 35 d1st6a4 not modelled 34.3 29 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 36 c2krgA_ not modelled 33.9 11 PDB header:signaling protein Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1; PDBTitle: solution structure of human sodium/ hydrogen exchange2 regulatory factor 1(150-358) 37 c3shuB_ not modelled 33.5 26 PDB header:cell adhesion Chain: B: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3 38 d1fdra1 not modelled 33.2 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 39 d1gvha2 not modelled 32.7 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 40 c3o0pA_ not modelled 32.5 14 PDB header:transferase , hydrolase Chain: A: PDB Molecule:sortase family protein; PDBTitle: pilus-related sortase c of group b streptococcus 41 c3re9A_ not modelled 31.1 18 PDB header:transferase Chain: A: PDB Molecule:sortase-like protein; PDBTitle: crystal structure of sortasec1 from streptococcus suis 42 c2l55A_ not modelled 31.0 14 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 43 c3cgnA_ not modelled 30.8 26 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 44 c2pjhB_ not modelled 30.4 13 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 45 d1st6a3 not modelled 30.0 28 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 46 c3pr9A_ not modelled 29.2 8 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 47 c2kr7A_ not modelled 29.1 0 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 48 c2w1kB_ not modelled 28.8 19 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-3 (srtc-3) from2 streptococcus pneumoniae 49 d1dm9a_ not modelled 26.9 14 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 50 c1dm9A_ not modelled 26.9 14 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 51 d2piaa1 not modelled 26.9 23 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 52 c2k8iA_ not modelled 26.8 23 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 53 c2xwgA_ not modelled 26.8 21 PDB header:hydrolase Chain: A: PDB Molecule:sortase; PDBTitle: crystal structure of sortase c-1 from actinomyces oris (formerly2 actinomyces naeslundii) 54 d2f5ya1 not modelled 26.5 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 55 c3k1rA_ not modelled 26.0 12 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 56 c3g66A_ not modelled 25.0 11 PDB header:transferase Chain: A: PDB Molecule:sortase c; PDBTitle: the crystal structure of streptococcus pneumoniae sortase c2 provides novel insights into catalysis as well as pilin3 substrate specificity 57 d2gp4a1 not modelled 24.7 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 58 d1t9fa_ not modelled 23.9 10 Fold:beta-Trefoil Superfamily:MIR domain Family:MIR domain 59 d1ep3b1 not modelled 23.4 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 60 d1uita_ not modelled 23.4 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 61 d1y7na1 not modelled 22.8 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 62 c3rccI_ not modelled 22.7 7 PDB header:hydrolase Chain: I: PDB Molecule:sortase srta; PDBTitle: crystal structure of the streptococcus agalactiae sortase a 63 c1cz5A_ not modelled 21.3 17 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 64 c3prdA_ not modelled 20.8 8 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 65 c3u5cG_ not modelled 20.3 14 PDB header:ribosome Chain: G: PDB Molecule:40s ribosomal protein s6-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 66 d1pina2 not modelled 20.3 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 67 d1fnda1 not modelled 19.3 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 68 c2piaA_ not modelled 18.1 12 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 69 d2iv2x1 not modelled 18.0 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 70 c2vn1A_ not modelled 17.9 10 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 71 d1ix5a_ not modelled 17.9 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 72 d1sm4a1 not modelled 17.2 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 73 d2a6qa1 not modelled 16.9 21 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 74 c2xznY_ not modelled 16.8 17 PDB header:ribosome Chain: Y: PDB Molecule:rps6e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 75 d2jioa1 not modelled 16.7 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 76 c1krhA_ not modelled 16.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 77 c2gp4A_ not modelled 16.0 11 PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis 78 c2eehA_ not modelled 15.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 7; PDBTitle: solution structure of first pdz domain of pdz domain2 containing protein 7 79 c2z17A_ not modelled 15.7 26 PDB header:protein binding Chain: A: PDB Molecule:pleckstrin homology sec7 and coiled-coil domains- PDBTitle: crystal sturcture of pdz domain from human pleckstrin2 homology, sec7 80 d1vloa1 not modelled 15.3 15 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 81 c3rbjB_ not modelled 15.0 21 PDB header:hydrolase Chain: B: PDB Molecule:sortase family protein; PDBTitle: crystal structure of the lid-mutant of streptococcus agalactiae2 sortase c1 82 d1kshb_ not modelled 14.5 5 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 83 c2l66B_ not modelled 14.4 15 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 84 d1seta1 not modelled 13.6 16 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Seryl-tRNA synthetase (SerRS) 85 d1qbea_ not modelled 13.6 22 Fold:RNA bacteriophage capsid protein Superfamily:RNA bacteriophage capsid protein Family:RNA bacteriophage capsid protein 86 d1kwaa_ not modelled 13.3 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 87 d1ogya1 not modelled 13.0 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 88 c2fug4_ not modelled 12.8 10 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 89 d2fug41 not modelled 12.8 10 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nqo4-like 90 d1gawa1 not modelled 12.7 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 91 d1qfja1 not modelled 12.7 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 92 d1q1ca1 not modelled 12.2 16 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 93 c2w1jB_ not modelled 12.0 14 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-1 (srtc-1) from2 streptococcus pneumoniae 94 c2d90A_ not modelled 11.9 18 PDB header:protein binding Chain: A: PDB Molecule:pdz domain containing protein 1; PDBTitle: solution structure of the third pdz domain of pdz domain2 containing protein 1 95 c2xzrA_ not modelled 11.4 32 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 96 d1vlfm1 not modelled 11.4 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 97 d1a8pa1 not modelled 11.3 18 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 98 d2bmwa1 not modelled 11.2 30 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 99 d1nbwa1 not modelled 10.6 62 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit