Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	M	G	L	F	Y	G	S	S	T	C	Y	T	E	M	A	A	E	K	I	R	D	I	I	G	P	E	L	V	T	L	H	N	L	K	D	D	S	P	K	L	M	E	Q	Y	D	V	L	I	L	G	I	P	T	W	D	F	G	E
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	Q	E	D	W	E	A	V	W	D	Q	L	D	D	L	N	L	E	G	K	I	V	A	L	Y	G	L	G	D	Q	L	G	Y	G	E	W	F	L	D	A	L	G	M	L	H	D	K	L	S	T	K	G	V	K	F	V	G	Y	W	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Sequence		T	E	G	Y	E	F	T	S	P	K	P	V	I	A	D	G	Q	L	F	V	G	L	A	L	D	E	T	N	Q	Y	D	L	S	D	E	R	I	Q	S	W	C	E	Q	I	L	N	E	M	A	E	H	Y	A
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?	?																		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1obo chain A Region: 2 - 168 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 48% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1yob chain A domain 1 Region: 2 - 168 Aligned: 165 Modelled: 167 Confidence: 100.0% Identity: 45% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1czn chain A Region: 2 - 168 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 47% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2wc1 chain A Region: 1 - 168 Aligned: 166 Modelled: 168 Confidence: 100.0% Identity: 39% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Phyre2 PDB 1ag9 chain A Region: 3 - 168 Aligned: 165 Modelled: 166 Confidence: 100.0% Identity: 44% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2fcr chain A Region: 2 - 168 Aligned: 165 Modelled: 167 Confidence: 100.0% Identity: 33% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1fue chain A Region: 2 - 169 Aligned: 162 Modelled: 168 Confidence: 100.0% Identity: 38% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1tll chain A domain 2 Region: 1 - 172 Aligned: 145 Modelled: 147 Confidence: 100.0% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1b1c chain A Region: 2 - 173 Aligned: 145 Modelled: 147 Confidence: 99.9% Identity: 22% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 3hr4 chain C Region: 2 - 173 Aligned: 145 Modelled: 147 Confidence: 99.9% Identity: 18% PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex Phyre2 PDB 1bvy chain F Region: 2 - 173 Aligned: 146 Modelled: 147 Confidence: 99.9% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1bvy chain F Region: 2 - 173 Aligned: 146 Modelled: 147 Confidence: 99.9% Identity: 18% PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) Phyre2 PDB 1tll chain A Region: 2 - 173 Aligned: 145 Modelled: 147 Confidence: 99.9% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. Phyre2 PDB 1ja1 chain A domain 2 Region: 1 - 173 Aligned: 146 Modelled: 148 Confidence: 99.9% Identity: 21% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 2bpo chain A Region: 2 - 173 Aligned: 146 Modelled: 149 Confidence: 99.9% Identity: 21% PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. Phyre2 PDB 1ykg chain A domain 1 Region: 3 - 171 Aligned: 140 Modelled: 142 Confidence: 99.9% Identity: 26% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 2hnb chain A Region: 1 - 165 Aligned: 144 Modelled: 146 Confidence: 99.9% Identity: 22% PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin Phyre2 PDB 1j9z chain B Region: 2 - 173 Aligned: 145 Modelled: 147 Confidence: 99.9% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g Phyre2 PDB 3f6s chain I Region: 2 - 168 Aligned: 141 Modelled: 143 Confidence: 99.9% Identity: 26% PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers Phyre2 PDB 1f4p chain A Region: 2 - 168 Aligned: 141 Modelled: 143 Confidence: 99.9% Identity: 27% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 1 d1oboa_ 2 d1yoba1 3 d1czna_ 4 c2wc1A_ 5 d1ag9a_ 6 d2fcra_ 7 d1fuea_ 8 d1tlla2 9 d1b1ca_ 10 c3hr4C_ 11 d1bvyf_ 12 c1bvyF_ 13 c1tllA_ 14 d1ja1a2 15 c2bpoA_ 16 d1ykga1 17 c2hnbA_ 18 c1j9zB_ 19 c3f6sI_ 20 d1f4pa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oboa_ 100.0 48 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 2 d1yoba1 100.0 45 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 3 d1czna_ 100.0 47 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 4 c2wc1A_ 100.0 39 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 5 d1ag9a_ 100.0 44 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 6 d2fcra_ 100.0 33 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 7 d1fuea_ 100.0 38 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 8 d1tlla2 100.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 9 d1b1ca_ 99.9 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 10 c3hr4C_ 99.9 18 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 11 d1bvyf_ 99.9 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 12 c1bvyF_ 99.9 18 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 13 c1tllA_ 99.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 14 d1ja1a2 99.9 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 15 c2bpoA_ 99.9 21 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 16 d1ykga1 99.9 26 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 17 c2hnbA_ 99.9 22 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 18 c1j9zB_ 99.9 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 19 c3f6sI_ 99.9 26 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 20 d1f4pa_ 99.9 27 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 21 d1vmea1 not modelled 99.8 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 22 c3klbA_ not modelled 99.8 25 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 23 c1vmeB_ not modelled 99.8 19 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 24 d1e5da1 not modelled 99.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 25 d5nula_ not modelled 99.8 25 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 26 d1ycga1 not modelled 99.8 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 27 c2x2oA_ not modelled 99.8 22 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 28 d1rlja_ not modelled 99.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 29 c3hlyA_ not modelled 99.8 11 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 30 d2fz5a1 not modelled 99.8 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 31 d2arka1 not modelled 99.8 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 32 c3n39D_ not modelled 99.7 18 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 33 c1ychD_ not modelled 99.7 18 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 34 c3fniA_ not modelled 99.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 35 d2a5la1 not modelled 99.7 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 36 c2ohiB_ not modelled 99.6 18 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 37 c3edoA_ not modelled 99.6 24 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 38 d1ydga_ not modelled 99.6 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 39 c1e5dA_ not modelled 99.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 40 c3d7nA_ not modelled 99.6 16 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 41 c2q9uB_ not modelled 99.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 42 c2zkiH_ not modelled 99.6 13 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 43 c3b6iB_ not modelled 99.6 18 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 44 d1rtta_ not modelled 99.1 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 45 c3lcmB_ not modelled 99.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 46 c2q62A_ not modelled 99.0 15 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 47 d1t5ba_ not modelled 98.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 48 d1t0ia_ not modelled 98.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 49 c3k1yE_ not modelled 98.9 17 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 50 c2fzvC_ not modelled 98.8 16 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 51 d1sqsa_ not modelled 98.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 52 c2hpvA_ not modelled 98.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 53 d2fzva1 not modelled 98.8 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 54 c3p0rA_ not modelled 98.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 55 d1nni1_ not modelled 98.7 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 56 d2z98a1 not modelled 98.7 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 57 c3fvwA_ not modelled 98.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 58 d1rlia_ not modelled 98.5 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 59 c3rpeA_ not modelled 98.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 60 c2vzhA_ not modelled 98.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 61 c3f2vA_ not modelled 98.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 62 d2qwxa1 not modelled 98.5 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 63 c2amjD_ not modelled 98.3 17 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 64 c2v9cA_ not modelled 98.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 65 d1qrda_ not modelled 98.2 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 66 d1d4aa_ not modelled 98.0 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 67 d1dxqa_ not modelled 97.9 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 68 c3ha2B_ not modelled 96.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 69 c3eywA_ not modelled 94.7 14 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 70 d2a9va1 not modelled 87.2 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 71 c2jjmH_ not modelled 86.6 8 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 72 c3czcA_ not modelled 82.5 12 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 73 d1dlja3 not modelled 79.2 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 74 c3dnfB_ not modelled 75.0 12 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 75 c1tvmA_ not modelled 74.7 21 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 76 d1k9vf_ not modelled 74.3 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 77 c2issF_ not modelled 70.9 16 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 78 c3ff4A_ not modelled 67.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein chu_1412 79 d1t0ba_ not modelled 64.2 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 80 c1z0zC_ not modelled 62.5 15 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 81 d1z0sa1 not modelled 62.5 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 82 d1rzua_ not modelled 62.5 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 83 d2r4qa1 not modelled 61.6 13 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 84 c2gejA_ not modelled 61.5 10 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 85 d2bisa1 not modelled 60.0 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 86 d1wl8a1 not modelled 58.8 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 87 d2c42a3 not modelled 54.8 13 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Pyruvate-ferredoxin oxidoreductase, PFOR, domain II 88 d1u0ta_ not modelled 54.3 13 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 89 c3oy2A_ not modelled 53.0 12 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 90 c3fxaA_ not modelled 52.7 10 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 91 c3nbmA_ not modelled 52.6 13 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 92 c2ct6A_ not modelled 52.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2 93 c2qzsA_ not modelled 51.0 9 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 94 d3eeqa2 not modelled 50.4 12 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 95 c3c4vB_ not modelled 50.3 4 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 96 c3euaD_ not modelled 50.0 6 PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution 97 d1x94a_ not modelled 48.3 13 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 98 c2amlB_ not modelled 46.8 12 PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution 99 c1vkrA_ not modelled 46.7 10 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 100 d1vkra_ not modelled 46.7 10 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 101 c2ar7A_ not modelled 46.1 8 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 4; PDBTitle: crystal structure of human adenylate kinase 4, ak4 102 d1rrva_ not modelled 45.6 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 103 d1iloa_ not modelled 44.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 104 d1mv8a3 not modelled 43.9 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 105 d1c1da1 not modelled 43.1 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 106 d1j5xa_ not modelled 43.0 13 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 107 d1v9la1 not modelled 42.1 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 108 c2x3yA_ not modelled 40.8 14 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 109 d1tk9a_ not modelled 40.5 10 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 110 c3g79A_ not modelled 40.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 111 d2jfga1 not modelled 39.6 33 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 112 d1vima_ not modelled 38.6 9 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 113 d1ccwa_ not modelled 38.5 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 114 c1yt5A_ not modelled 38.0 14 PDB header:transferase Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of nad kinase from thermotoga maritima 115 c3knzA_ not modelled 37.0 9 PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution 116 c3shoA_ not modelled 36.7 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 117 d2nv0a1 not modelled 36.7 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 118 d1leha1 not modelled 36.1 38 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 119 c2l2qA_ not modelled 36.0 19 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 120 c1dliA_ not modelled 35.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the2 catalytic residues necessary for the two-fold oxidation

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0