Job Description P10121 Confidence 97.88% Date Thu Jan 5 11:32:03 GMT 2012 Rank 150 Aligned Residues 115 % Identity 18% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																.	350	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	V	I	A	Q
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.																		.	.
Template Sequence		P	Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	.	.	.	K	V	P	A	A	Y	A	A	Q	G	Y	K	V	L	V	L	N	.	.	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I	R	T	G	V	R	T	I	T	T	G	S	P	I	T	Y	S
Template Known Secondary structure			S	S										T	T	S		T	T	T	.	.	.								T	T	T								.	.	S																	S								S	S								S
Template Predicted Secondary structure																					.	.	.																		.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	A	K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S
Query Conservation
Alig confidence													.	.	.	.	.	.	.													.	.																						.	.	.	.
Template Conservation													.	.	.	.	.	.	.													.	.																						.	.	.	.
Template Sequence		T	Y	G	K	F	L	A	D	G	G	S	.	.	.	.	.	.	.	G	G	A	Y	D	I	I	I	C	D	E	C	.	.	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	.	.	.	.	G	A	R	L	V	V	L	A	T	A	T
Template Known Secondary structure									T	T			.	.	.	.	.	.	.					S						T	T	.	.	T			S														T	T	T	T	.	.	.	.	T		S							S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.													.	.																						.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions