Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP30843
DateThu Jan 5 11:46:27 GMT 2012
Unique Job ID9dca568ca2330c43

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ys7B_
Top template information
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
Confidence and coverage
Confidence:100.0% Coverage: 98%
218 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN
Secondary structure 
SS confidence 
Disorder  ??????
?
?
Disorder confidence 
 
   .........190.........200.........210.........220..
Sequence  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ys7 chain B

3D model

Region: 2 - 219
Aligned: 218
Modelled: 218
Confidence: 100.0%
Identity: 34%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2oqr chain A

3D model

Region: 2 - 217
Aligned: 215
Modelled: 216
Confidence: 100.0%
Identity: 36%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 2gwr chain A

3D model

Region: 1 - 219
Aligned: 216
Modelled: 219
Confidence: 100.0%
Identity: 33%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 3r0j chain A

3D model

Region: 1 - 219
Aligned: 216
Modelled: 219
Confidence: 100.0%
Identity: 33%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 2hqr chain A

3D model

Region: 1 - 220
Aligned: 214
Modelled: 220
Confidence: 100.0%
Identity: 25%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 1kgs chain A

3D model

Region: 1 - 219
Aligned: 214
Modelled: 219
Confidence: 100.0%
Identity: 36%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 1p2f chain A

3D model

Region: 2 - 217
Aligned: 208
Modelled: 213
Confidence: 100.0%
Identity: 28%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 1zn2 chain A

3D model

Region: 2 - 202
Aligned: 181
Modelled: 190
Confidence: 99.9%
Identity: 19%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 2ayx chain A

3D model

Region: 1 - 125
Aligned: 125
Modelled: 125
Confidence: 99.9%
Identity: 30%
PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain

Phyre2

PDB 3c3w chain B

3D model

Region: 1 - 202
Aligned: 190
Modelled: 199
Confidence: 99.9%
Identity: 19%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 1ny5 chain A

3D model

Region: 1 - 120
Aligned: 120
Modelled: 120
Confidence: 99.9%
Identity: 29%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state

Phyre2

PDB 3eq2 chain A

3D model

Region: 2 - 118
Aligned: 114
Modelled: 117
Confidence: 99.9%
Identity: 26%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb

Phyre2

PDB 3bre chain A

3D model

Region: 1 - 117
Aligned: 117
Modelled: 117
Confidence: 99.9%
Identity: 29%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702

Phyre2

PDB 1rnl chain A

3D model

Region: 1 - 202
Aligned: 179
Modelled: 188
Confidence: 99.9%
Identity: 21%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 1ny5 chain A domain 1

3D model

Region: 1 - 120
Aligned: 120
Modelled: 120
Confidence: 99.9%
Identity: 29%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1ys7 chain A domain 2

3D model

Region: 2 - 119
Aligned: 118
Modelled: 118
Confidence: 99.9%
Identity: 38%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1w25 chain B

3D model

Region: 2 - 117
Aligned: 116
Modelled: 116
Confidence: 99.9%
Identity: 29%
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp

Phyre2

PDB 1kgs chain A domain 2

3D model

Region: 1 - 120
Aligned: 120
Modelled: 120
Confidence: 99.9%
Identity: 37%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 3rqi chain A

3D model

Region: 2 - 165
Aligned: 163
Modelled: 164
Confidence: 99.9%
Identity: 19%
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate

Phyre2

PDB 2pl1 chain A domain 1

3D model

Region: 2 - 119
Aligned: 118
Modelled: 118
Confidence: 99.9%
Identity: 43%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2
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c1ys7B_
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c2oqrA_
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c2gwrA_
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c3r0jA_
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c2hqrA_
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c1kgsA_
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c1p2fA_
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c1zn2A_
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c2ayxA_
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c3c3wB_
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c1ny5A_
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c3eq2A_
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c3breA_
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c1rnlA_
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d1ny5a1
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d1ys7a2
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c1w25B_
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d1kgsa2
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c3rqiA_
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d2pl1a1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ys7B_
100.0 34 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
2c2oqrA_
100.0 36 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
3c2gwrA_
100.0 33 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
4c3r0jA_
100.0 33 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
5c2hqrA_
100.0 25 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
6c1kgsA_
100.0 36 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
7c1p2fA_
100.0 28 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
8c1zn2A_
99.9 19 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
9c2ayxA_
99.9 30 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
10c3c3wB_
99.9 19 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
11c1ny5A_
99.9 29 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
12c3eq2A_
99.9 26 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
13c3breA_
99.9 29 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
14c1rnlA_
99.9 21 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
15d1ny5a1
99.9 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
16d1ys7a2
99.9 38 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
17c1w25B_
99.9 29 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
18d1kgsa2
99.9 37 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
19c3rqiA_
99.9 19 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
20d2pl1a1
99.9 43 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
21c3dzdA_
not modelled 99.9 24 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
22d2a9pa1
not modelled 99.9 42 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
23d1s8na_
not modelled 99.9 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
24d1mvoa_
not modelled 99.9 39 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
25d2ayxa1
not modelled 99.9 30 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
26d1jbea_
not modelled 99.9 30 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
27d1peya_
not modelled 99.9 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
28c2jrlA_
not modelled 99.9 26 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
29c3hdgE_
not modelled 99.9 23 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
30c3cfyA_
not modelled 99.9 31 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
31c3i5aA_
not modelled 99.9 26 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
32c2zwmA_
not modelled 99.9 40 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
33d1dbwa_
not modelled 99.9 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
34d1krwa_
not modelled 99.9 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
35d1qkka_
not modelled 99.8 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
36c2rjnA_
not modelled 99.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
37d1w25a1
not modelled 99.8 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
38d1zh2a1
not modelled 99.8 42 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
39c2qr3A_
not modelled 99.8 23 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
40d1zesa1
not modelled 99.8 34 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
41c3nhzA_
not modelled 99.8 36 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
42c3gt7A_
not modelled 99.8 27 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
43d1u0sy_
not modelled 99.8 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
44c2qzjC_
not modelled 99.8 33 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
45c3cu5B_
not modelled 99.8 19 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
46d1yioa2
not modelled 99.8 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
47c3eulB_
not modelled 99.8 20 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
48d1dz3a_
not modelled 99.8 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
49d1zgza1
not modelled 99.8 34 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
50d1p6qa_
not modelled 99.8 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
51c3hv2B_
not modelled 99.8 28 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
52c3crnA_
not modelled 99.8 28 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
53c3b2nA_
not modelled 99.8 25 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
54c3t6kB_
not modelled 99.8 37 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
55c3jteA_
not modelled 99.8 24 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
56d1xhfa1
not modelled 99.8 39 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
57c3h1gA_
not modelled 99.8 23 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
58c3c3mA_
not modelled 99.8 26 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
59c2zayA_
not modelled 99.8 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
60c2qv0A_
not modelled 99.8 23 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
61c3cz5B_
not modelled 99.8 24 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
62c3cg4A_
not modelled 99.8 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
63d1a04a2
not modelled 99.8 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
64c3cnbC_
not modelled 99.8 23 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
65c3a0rB_
not modelled 99.8 32 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
66d1heya_
not modelled 99.8 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
67c2hqoA_
not modelled 99.8 28 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
68c3lteH_
not modelled 99.8 27 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
69d2r25b1
not modelled 99.8 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
70c2hqnA_
not modelled 99.8 25 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
71c3f6cB_
not modelled 99.8 19 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
72c2qxyB_
not modelled 99.8 23 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
73c3hebB_
not modelled 99.8 29 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
74d1k66a_
not modelled 99.8 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
75c2jk1A_
not modelled 99.8 25 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
76c2jzyA_
not modelled 99.8 33 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein pcor;
PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae
77c3hzhA_
not modelled 99.8 20 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
78c3t8yA_
not modelled 99.8 19 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
79c3kcnA_
not modelled 99.8 22 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
80c3grcD_
not modelled 99.8 24 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
81c1a2oB_
not modelled 99.8 21 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
82c3khtA_
not modelled 99.8 20 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
83c3klnC_
not modelled 99.8 14 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
84c2qvgA_
not modelled 99.8 26 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
85d1p2fa2
not modelled 99.8 31 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
86c3hdvB_
not modelled 99.8 23 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
87d2b4aa1
not modelled 99.8 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
88d1mb3a_
not modelled 99.8 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
89c3gl9B_
not modelled 99.8 27 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
90c3i42A_
not modelled 99.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
91c2rdmB_
not modelled 99.8 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
92c3m6mF_
not modelled 99.8 25 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
93c2hwvA_
not modelled 99.8 31 PDB header:transcription
Chain: A: PDB Molecule:dna-binding response regulator vicr;
PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.
94c3cg0A_
not modelled 99.8 24 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
95d1gxqa_
not modelled 99.8 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
96d1i3ca_
not modelled 99.8 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
97c2j48A_
not modelled 99.8 18 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
98c3c97A_
not modelled 99.8 20 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:signal transduction histidine kinase;
PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
99d1opca_
not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
100c3snkA_
not modelled 99.8 19 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
101c3nhmA_
not modelled 99.8 26 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from myxococcus xanthus
102d1dcfa_
not modelled 99.8 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
103c3mmnA_
not modelled 99.8 20 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
104c3h5iA_
not modelled 99.8 28 PDB header:transcription
Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef
PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans
105c3eodA_
not modelled 99.8 29 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
106c3n0rA_
not modelled 99.8 24 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
107c3luaA_
not modelled 99.7 22 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
108d1a2oa1
not modelled 99.7 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
109c2zxjB_
not modelled 99.7 27 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein walr;
PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus
110d1ys7a1
not modelled 99.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
111c2pmuD_
not modelled 99.7 29 PDB header:transcription regulation
Chain: D: PDB Molecule:response regulator phop;
PDBTitle: crystal structure of the dna-binding domain of phop
112c3eqzB_
not modelled 99.7 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea
113d1w25a2
not modelled 99.7 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
114c2nt3A_
not modelled 99.7 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator homolog;
PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant)
115c3ktoA_
not modelled 99.7 13 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica
116d1p2fa1
not modelled 99.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
117c2k4jA_
not modelled 99.7 29 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: arsr dna binding domain
118c3ilhA_
not modelled 99.7 21 PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
119d1k68a_
not modelled 99.7 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
120d1qo0d_
not modelled 99.7 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Positive regulator of the amidase operon AmiR

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0