Job Description P0AFL6 Confidence 98.11% Date Thu Jan 5 11:26:41 GMT 2012 Rank 19 Aligned Residues 243 % Identity 14% Template c3js6A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein Resolution 1.95 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.																											.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	Q	E	F	A	A	V	D	L	G	S	N	S	F	H	M	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	V	V	D	G	A	M	Q	I	I	G	R	L	K	Q	R	V	H	L	A	D	G	L	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	V	Y	V	X	A	L	D	F	G	N	G	F	V	K	G	K	I	N	D	E	K	F	V	I	P	S	R	I	G	R	K	T	N	E	N	N	Q	L	K	G	F	V	D	N	K	L	D	V	S	E	F	I	I	N	G	N	N	D	E	V	L	L	F	G	N	D	L	D	K	T	T	N	T	G	K	D	T	A
Template Known Secondary structure													S	S							T	T							S							S	S			S	S	T	T	T	S					S							T	T		T	T						S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110														.	.	.	.	.	.	.
Predicted Secondary structure		.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	G	P	D	N	M	L	S	E	E	A	M	T	R	G	L	N	C	L	S	L	F	A	E	R	L	Q	G	F	S	P	A	S	V	C	I	V	G	T	H	T	L	R	Q	A	L	N	A	T	D	F	L	K	R	A	E	K	V	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	I	E	I	I	S
Query Conservation		.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	N	D	R	Y	D	I	K	S	F	K	D	L	V	E	C	S	I	G	L	L	A	R	E	V	P	E	E	V	V	N	V	V	I	A	T	G	X	P	S	N	E	I	G	T	D	K	Q	A	K	F	E	K	L	L	N	K	S	R	L	I	E	I	D	G	I	A	K	T	I	N	V	K	G	V	K	I	V	A
Template Known Secondary structure			S	T	T	G	G	G	S																T	T	S		S	S												G	G	G	T	T	S											S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		118	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.											180	.	.
Predicted Secondary structure												.	.	.																																		.	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.																																		.	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	E	E	A	R	L	I	F	M	.	.	.	G	V	E	H	T	Q	P	E	K	G	R	K	L	V	I	D	I	G	G	G	S	T	E	L	V	I	G	E	N	F	E	P	I	.	.	L	V	E	S	R	R	M	G	C	V	S	F	A	Q	L	Y	F	P	G	.	.	.	.	.	.	.	.	.	.	G	V	I
Query Conservation												.	.	.																																		.	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.																																		.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	P	X	G	T	L	L	D	L	N	X	E	N	G	K	V	F	K	A	F	T	E	G	K	Y	S	V	L	D	F	G	S	G	T	T	I	I	D	T	Y	Q	N	X	K	R	V	E	E	E	S	F	V	I	N	K	G	T	I	D	F	Y	K	R	I	A	S	H	V	S	T	P	R	M	I	E	K	G	L	E	F
Template Known Secondary structure										T	T			T	T								T										S	S									T	T				G	G	G					S														T								S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.								.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																								.																																			.	.	.	.	.	.	.
Query SS confidence																								.																																			.	.	.	.	.	.	.
Query Sequence		N	K	E	N	F	Q	R	A	R	M	A	A	A	Q	K	L	E	T	L	T	W	Q	.	F	R	I	Q	G	W	N	V	A	M	G	A	S	G	T	I	K	A	A	H	E	V	L	M	E	M	G	E	K	D	G	I	I	T	.	.	.	.	.	.	.	P	E	R	L	E	K	L	V	K	E	V	L	R
Query Conservation																								.																																			.	.	.	.	.	.	.
Alig confidence																								.																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	E	F	Y	K	E	Q	D	S	L	I	E	E	V	X	S	N	F	E	I	T	V	G	N	I	N	S	I	D	R	I	I	V	T	G	G	G	A	N	I	H	F	D	S	L	S	H	Y	Y	S	D	V	F	E	K	A	D	D	S	Q	F	S	N	V	R	G	Y	E	K	L	G	E	L	L	K	N
Template Known Secondary structure																								T			T	T	S		S						S	T	T												S	S	S						S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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