Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	I	K	P	D	D	N	W	R	W	Y	Y	D	E	E	H	D	R	M	M	L	D	L	A	N	G	M	L	F	R	S	R	F	A	R	K	M	L	T	P	D	A	F	S	P	A	G	F	C	V	D	D	A	A	L	Y	F	S	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	E	K	C	R	D	F	N	L	S	K	E	Q	K	A	E	L	V	L	N	A	L	V	A	I	R	Y	L	K	P	Q	M	P	K	S	W	H	F	V	S	H	G	E	M	W	V	P	M	P	G	D	A	A	C	V	W	L	S	D	T
Secondary structure
SS confidence
Disorder																																											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	E	Q	V	N	L	L	V	V	E	S	G	E	N	A	A	L	C	L	L	A	Q	P	C	V	V	I	A	G	R	A	M	Q	L	G	D	A	I	K	I	M	N	D	R	L	K	P	Q	V	N	V	D	S	F	S	L	E	Q	A	V
Secondary structure
SS confidence
Disorder																							?		?	?	?	?	?				?	?														?	?	?	?	?	?		?	?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gu1 chain A Region: 94 - 158 Aligned: 65 Modelled: 65 Confidence: 49.6% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae Phyre2 PDB 3k8r chain A Region: 12 - 35 Aligned: 24 Modelled: 24 Confidence: 48.0% Identity: 33% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution Phyre2 PDB 1q46 chain A domain 2 Region: 102 - 178 Aligned: 77 Modelled: 77 Confidence: 47.5% Identity: 14% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1e32 chain A domain 1 Region: 108 - 160 Aligned: 51 Modelled: 53 Confidence: 39.5% Identity: 25% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Cdc48 N-terminal domain-like Phyre2 PDB 2dk6 chain A Region: 5 - 19 Aligned: 15 Modelled: 15 Confidence: 39.3% Identity: 33% PDB header:signaling protein Chain: A: PDB Molecule:parp11 protein; PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11) Phyre2 PDB 1k75 chain A Region: 69 - 103 Aligned: 35 Modelled: 35 Confidence: 35.1% Identity: 14% Fold: ALDH-like Superfamily: ALDH-like Family: L-histidinol dehydrogenase HisD Phyre2 PDB 2hsi chain B Region: 98 - 161 Aligned: 64 Modelled: 64 Confidence: 33.7% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium Phyre2 PDB 2x8n chain A Region: 12 - 35 Aligned: 24 Modelled: 24 Confidence: 26.2% Identity: 25% PDB header:structural genomics Chain: A: PDB Molecule:cv0863; PDBTitle: solution nmr structure of uncharacterized protein cv08632 from chromobacterium violaceum. northeast structural3 genomics target (nesg) target cvt3. ocsp4 target cv0863. Phyre2 PDB 1q46 chain A Region: 102 - 179 Aligned: 78 Modelled: 78 Confidence: 26.1% Identity: 15% PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia Phyre2 PDB 2d8x chain A domain 2 Region: 152 - 167 Aligned: 16 Modelled: 16 Confidence: 17.1% Identity: 38% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1yc0 chain I Region: 9 - 19 Aligned: 11 Modelled: 11 Confidence: 16.0% Identity: 45% PDB header:hydrolase/inhibitor Chain: I: PDB Molecule:kunitz-type protease inhibitor 1; PDBTitle: short form hgfa with first kunitz domain from hai-1 Phyre2 PDB 1yz6 chain A Region: 106 - 179 Aligned: 74 Modelled: 74 Confidence: 15.5% Identity: 16% PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 alpha PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi Phyre2 PDB 1dem chain A Region: 9 - 19 Aligned: 11 Modelled: 11 Confidence: 15.0% Identity: 18% Fold: BPTI-like Superfamily: BPTI-like Family: Small Kunitz-type inhibitors & BPTI-like toxins Phyre2 PDB 1fak chain I Region: 10 - 19 Aligned: 10 Modelled: 10 Confidence: 14.9% Identity: 20% Fold: BPTI-like Superfamily: BPTI-like Family: Small Kunitz-type inhibitors & BPTI-like toxins Phyre2 PDB 2kku chain A Region: 3 - 41 Aligned: 39 Modelled: 39 Confidence: 14.2% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein af2351 from archaeoglobus2 fulgidus. northeast structural genomics consortium target3 att9/ontario center for structural proteomics target af2351 Phyre2 PDB 1tfx chain C Region: 9 - 19 Aligned: 11 Modelled: 11 Confidence: 13.8% Identity: 18% Fold: BPTI-like Superfamily: BPTI-like Family: Small Kunitz-type inhibitors & BPTI-like toxins Phyre2 PDB 1bik chain A domain 1 Region: 10 - 19 Aligned: 10 Modelled: 10 Confidence: 13.7% Identity: 20% Fold: BPTI-like Superfamily: BPTI-like Family: Small Kunitz-type inhibitors & BPTI-like toxins Phyre2 PDB 1bik chain A domain 2 Region: 10 - 19 Aligned: 10 Modelled: 10 Confidence: 13.2% Identity: 20% Fold: BPTI-like Superfamily: BPTI-like Family: Small Kunitz-type inhibitors & BPTI-like toxins Phyre2 PDB 1brb chain I Region: 10 - 19 Aligned: 10 Modelled: 10 Confidence: 13.0% Identity: 20% Fold: BPTI-like Superfamily: BPTI-like Family: Small Kunitz-type inhibitors & BPTI-like toxins Phyre2 PDB 1bpi chain A Region: 9 - 19 Aligned: 11 Modelled: 11 Confidence: 12.7% Identity: 18% Fold: BPTI-like Superfamily: BPTI-like Family: Small Kunitz-type inhibitors & BPTI-like toxins Phyre2 1 c2gu1A_ 2 c3k8rA_ 3 d1q46a2 4 d1e32a1 5 c2dk6A_ 6 d1k75a_ 7 c2hsiB_ 8 c2x8nA_ 9 c1q46A_ 10 d2d8xa2 11 c1yc0I_ 12 c1yz6A_ 13 d1dema_ 14 d1faki_ 15 c2kkuA_ 16 d1tfxc_ 17 d1bika1 18 d1bika2 19 d1brbi_ 20 d1bpia_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gu1A_ 49.6 20 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 2 c3k8rA_ 48.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution 3 d1q46a2 47.5 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 4 d1e32a1 39.5 25 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 5 c2dk6A_ 39.3 33 PDB header:signaling protein Chain: A: PDB Molecule:parp11 protein; PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11) 6 d1k75a_ 35.1 14 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 7 c2hsiB_ 33.7 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium 8 c2x8nA_ 26.2 25 PDB header:structural genomics Chain: A: PDB Molecule:cv0863; PDBTitle: solution nmr structure of uncharacterized protein cv08632 from chromobacterium violaceum. northeast structural3 genomics target (nesg) target cvt3. ocsp4 target cv0863. 9 c1q46A_ 26.1 15 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia 10 d2d8xa2 17.1 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 11 c1yc0I_ 16.0 45 PDB header:hydrolase/inhibitor Chain: I: PDB Molecule:kunitz-type protease inhibitor 1; PDBTitle: short form hgfa with first kunitz domain from hai-1 12 c1yz6A_ 15.5 16 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 alpha PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi 13 d1dema_ 15.0 18 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 14 d1faki_ 14.9 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 15 c2kkuA_ 14.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein af2351 from archaeoglobus2 fulgidus. northeast structural genomics consortium target3 att9/ontario center for structural proteomics target af2351 16 d1tfxc_ 13.8 18 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 17 d1bika1 13.7 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 18 d1bika2 13.2 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 19 d1brbi_ 13.0 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 20 d1bpia_ 12.7 18 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 21 d1w36b3 not modelled 12.5 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain 22 d1dtxa_ not modelled 12.2 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 23 c3bpjD_ not modelled 12.0 24 PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j; PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha 24 c1y62E_ not modelled 11.7 30 PDB header:toxin Chain: E: PDB Molecule:conkunitzin-s1; PDBTitle: a 2.4 crystal structure of conkunitzin-s1, a novel kunitz-2 fold cone snail neurotoxin. 25 d1irha_ not modelled 10.5 30 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 26 d1dtka_ not modelled 10.5 18 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 27 d1shpa_ not modelled 10.4 29 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 28 d1uuba_ not modelled 10.1 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 29 d1p2ji_ not modelled 10.1 18 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 30 d1go3e1 not modelled 10.0 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 31 c1tocR_ not modelled 10.0 30 PDB header:complex (hydrolase/inhibitor) Chain: R: PDB Molecule:ornithodorin; PDBTitle: structure of serine proteinase 32 d2brfa1 not modelled 9.8 22 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 33 d2j7ja3 not modelled 9.8 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 34 d1bunb_ not modelled 9.7 30 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 35 d1jc6a_ not modelled 9.1 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 36 d2z0sa1 not modelled 9.1 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 37 d1n7oa3 not modelled 9.0 60 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hyaluronate lyase-like, central domain 38 d1g6xa_ not modelled 8.7 18 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 39 c3bybB_ not modelled 8.7 18 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:textilinin; PDBTitle: crystal structure of textilinin-1, a kunitz-type serine2 protease inhibitor from the australian common brown snake3 venom 40 d1hn0a4 not modelled 8.6 40 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hyaluronate lyase-like, central domain 41 d1aapa_ not modelled 8.6 40 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 42 c3hizB_ not modelled 8.5 22 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 43 d1f1sa4 not modelled 8.3 40 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hyaluronate lyase-like, central domain 44 d2ahob2 not modelled 8.3 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 45 d1ujra_ not modelled 8.2 23 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 46 d1x1ia3 not modelled 8.1 60 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hyaluronate lyase-like, central domain 47 d3ctka1 not modelled 7.9 24 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Plant cytotoxins 48 d1zr0b1 not modelled 7.8 40 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 49 d1wjia_ not modelled 7.7 41 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 50 c3kyeC_ not modelled 7.7 26 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:roadblock/lc7 domain, robl_lc7; PDBTitle: crystal structure of roadblock/lc7 domain from streptomyces2 avermitilis 51 d1rwha3 not modelled 7.7 60 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hyaluronate lyase-like, central domain 52 d1cb8a3 not modelled 7.6 60 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hyaluronate lyase-like, central domain 53 d1ld6a_ not modelled 7.6 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 54 d1ejmb_ not modelled 7.5 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 55 c2ba1B_ not modelled 7.5 15 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 56 d1di2a_ not modelled 7.4 11 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 57 d1adza_ not modelled 7.4 20 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 58 d2b2ca1 not modelled 7.3 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Spermidine synthase 59 d1ktha_ not modelled 7.1 40 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 60 c3tekA_ not modelled 7.0 26 PDB header:dna binding protein Chain: A: PDB Molecule:thermodbp-single stranded dna binding protein; PDBTitle: thermodbp: a non-canonical single-stranded dna binding protein with a2 novel structure and mechanism 61 c2l3iA_ not modelled 7.0 100 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 62 d2ba0a1 not modelled 6.8 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 d1f2fa_ not modelled 6.6 22 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 64 d1bf0a_ not modelled 6.6 10 Fold:BPTI-like Superfamily:BPTI-like Family:Small Kunitz-type inhibitors & BPTI-like toxins 65 c2kcrA_ not modelled 6.6 30 PDB header:toxin Chain: A: PDB Molecule:anntoxin; PDBTitle: solution structure of anntoxin 66 d1kl9a2 not modelled 6.6 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 67 c3tr9A_ not modelled 6.6 10 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 68 c2ddiA_ not modelled 6.5 30 PDB header:protein binding Chain: A: PDB Molecule:wap, follistatin/kazal, immunoglobulin, kunitz PDBTitle: nmr structure of the second kunitz domain of human wfikkn1 69 d1sdda2 not modelled 6.3 50 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 70 d2je6i1 not modelled 6.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 71 c2odyF_ not modelled 6.1 27 PDB header:blood clotting/blood clotting inhibitor Chain: F: PDB Molecule:boophilin; PDBTitle: thrombin-bound boophilin displays a functional and accessible2 reactive-site loop 72 d1bz7a1 not modelled 6.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 73 d1mnda2 not modelled 5.9 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Motor proteins 74 c1q8kA_ not modelled 5.9 11 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 PDBTitle: solution structure of alpha subunit of human eif2 75 c2jufA_ not modelled 5.8 19 PDB header:gene regulation Chain: A: PDB Molecule:p53-associated parkin-like cytoplasmic protein; PDBTitle: nmr solution structure of parc cph domain. nesg target2 hr3443b/sgc-toronto 76 d2eyva1 not modelled 5.5 22 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 77 c2jo7A_ not modelled 5.4 24 PDB header:surface active protein Chain: A: PDB Molecule:glycosylphosphatidylinositol-anchored merozoite PDBTitle: solution structure of the adhesion protein bd37 from2 babesia divergens 78 c1facA_ not modelled 5.4 50 PDB header:coagulation factor Chain: A: PDB Molecule:coagulation factor viii; PDBTitle: coagulation factor viii, nmr, 1 structure 79 d1qe3a_ not modelled 5.4 33 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 80 c3ayhA_ not modelled 5.3 12 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii 81 d1d0xa2 not modelled 5.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Motor proteins 82 d2i27n1 not modelled 5.2 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 83 d1il1b1 not modelled 5.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 84 c2kz5A_ not modelled 5.1 25 PDB header:transcription Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit; PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b 85 d1ouoa_ not modelled 5.0 14 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Endonuclease I

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0