Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	A	L	L	P	L	L	L	C	C	F	I	F	P	A	S	G	K	D	A	G	W	Q	W	Y	N	E	K	I	N	P	K	E	K	E	N	K	P	V	P	A	A	P	R	Q	E	P	D	I	M	Q	K	L	A	A	L	Q	T
Secondary structure
SS confidence
Disorder		?	?	?																												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	K	R	A	L	Y	E	A	I	L	Y	P	G	V	D	N	F	V	K	Y	F	R	L	Q	N	Y	W	A	Q	Q	A	G	L	F	T	M	S	A	R	K	A	M	L	A	H	P	E	L	D	Y	N	L	Q	Y	S	H	Y	N	G
Secondary structure
SS confidence
Disorder																																																							?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	V	R	N	Q	L	A	A	D	Q	A	Q	Q	R	Q	A	I	A	K	L	A	E	H	Y	G	I	M	F	F	Y	R	G	Q	D	P	I	D	G	Q	L	A	Q	V	I	N	G	F	R	D	T	Y	G	L	S	V	I	P	V	S	V
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	G	V	I	N	P	L	L	P	D	S	R	T	D	Q	G	Q	A	Q	R	L	G	V	K	Y	F	P	A	M	M	L	V	D	P	K	Q	G	S	V	R	P	L	S	Y	G	F	I	S	Q	D	D	L	A	K	Q	F	L	N	V	S
Secondary structure
SS confidence
Disorder						?	?																																										?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		E	D	F	K	P	N	F
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2hyx chain A Region: 137 - 245 Aligned: 108 Modelled: 109 Confidence: 99.7% Identity: 21% PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis Phyre2 PDB 1z5y chain E domain 1 Region: 137 - 246 Aligned: 108 Modelled: 110 Confidence: 99.6% Identity: 16% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 2l57 chain A Region: 141 - 240 Aligned: 92 Modelled: 100 Confidence: 99.6% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens Phyre2 PDB 1zma chain A domain 1 Region: 141 - 236 Aligned: 89 Modelled: 96 Confidence: 99.6% Identity: 12% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 1j08 chain A domain 2 Region: 131 - 240 Aligned: 99 Modelled: 110 Confidence: 99.6% Identity: 11% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: PDI-like Phyre2 PDB 2ppt chain A Region: 132 - 240 Aligned: 98 Modelled: 109 Confidence: 99.5% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 Phyre2 PDB 1kng chain A Region: 137 - 242 Aligned: 105 Modelled: 106 Confidence: 99.5% Identity: 14% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 2b5x chain A domain 1 Region: 136 - 236 Aligned: 100 Modelled: 101 Confidence: 99.5% Identity: 20% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 1a8l chain A domain 2 Region: 131 - 240 Aligned: 99 Modelled: 110 Confidence: 99.5% Identity: 13% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: PDI-like Phyre2 PDB 3f9u chain A Region: 132 - 244 Aligned: 113 Modelled: 113 Confidence: 99.5% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis Phyre2 PDB 2fy6 chain A domain 1 Region: 137 - 236 Aligned: 99 Modelled: 100 Confidence: 99.5% Identity: 15% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 1i5g chain A Region: 137 - 220 Aligned: 84 Modelled: 84 Confidence: 99.5% Identity: 18% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3p2a chain B Region: 141 - 242 Aligned: 91 Modelled: 102 Confidence: 99.5% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis Phyre2 PDB 3p2a chain A Region: 141 - 241 Aligned: 90 Modelled: 101 Confidence: 99.5% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis Phyre2 PDB 1o8x chain A Region: 137 - 220 Aligned: 84 Modelled: 84 Confidence: 99.5% Identity: 20% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 2l5l chain A Region: 141 - 246 Aligned: 95 Modelled: 106 Confidence: 99.5% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus Phyre2 PDB 2l6d chain A Region: 141 - 239 Aligned: 86 Modelled: 99 Confidence: 99.5% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form Phyre2 PDB 3hyp chain B Region: 141 - 241 Aligned: 90 Modelled: 101 Confidence: 99.5% Identity: 19% PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant Phyre2 PDB 3emx chain B Region: 134 - 239 Aligned: 102 Modelled: 106 Confidence: 99.5% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix Phyre2 PDB 1o73 chain A Region: 137 - 220 Aligned: 84 Modelled: 84 Confidence: 99.5% Identity: 18% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3d22 chain A Region: 104 - 246 Aligned: 123 Modelled: 123 Confidence: 99.4% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h-type; PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s Phyre2 1 c2hyxA_ 2 d1z5ye1 3 c2l57A_ 4 d1zmaa1 5 d1j08a2 6 c2pptA_ 7 d1knga_ 8 d2b5xa1 9 d1a8la2 10 c3f9uA_ 11 d2fy6a1 12 d1i5ga_ 13 c3p2aB_ 14 c3p2aA_ 15 d1o8xa_ 16 c2l5lA_ 17 c2l6dA_ 18 c3hypB_ 19 c3emxB_ 20 d1o73a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 c3d22A_ 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2hyxA_ 99.7 21 PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis 2 d1z5ye1 99.6 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 3 c2l57A_ 99.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens 4 d1zmaa1 99.6 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 5 d1j08a2 99.6 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 6 c2pptA_ 99.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 7 d1knga_ 99.5 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 8 d2b5xa1 99.5 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 9 d1a8la2 99.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 10 c3f9uA_ 99.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 11 d2fy6a1 99.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 12 d1i5ga_ 99.5 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 13 c3p2aB_ 99.5 12 PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 14 c3p2aA_ 99.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 15 d1o8xa_ 99.5 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 16 c2l5lA_ 99.5 17 PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus 17 c2l6dA_ 99.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form 18 c3hypB_ 99.5 19 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant 19 c3emxB_ 99.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix 20 d1o73a_ 99.5 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 21 c3qdnA_ not modelled 99.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium 22 d2fwha1 not modelled 99.5 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 23 c3ul3A_ not modelled 99.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery 24 c1xbsA_ not modelled 99.4 23 PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein 25 c3kh7A_ not modelled 99.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 26 c3erwG_ not modelled 99.4 12 PDB header:oxidoreductase Chain: G: PDB Molecule:sporulation thiol-disulfide oxidoreductase a; PDBTitle: crystal structure of stoa from bacillus subtilis 27 c3lorB_ not modelled 99.4 12 PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a 28 c2b1kA_ not modelled 99.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein 29 d1zzoa1 not modelled 99.4 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 30 c2vocA_ not modelled 99.4 20 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: thioredoxin a active site mutants form mixed disulfide2 dimers that resemble enzyme-substrate reaction3 intermediate 31 d1hyua4 not modelled 99.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 32 c2i1uA_ not modelled 99.4 15 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: mycobacterium tuberculosis thioredoxin c 33 d1dbya_ not modelled 99.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 34 c3dxbE_ not modelled 99.4 18 PDB header:splicing, transcription Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm); PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin 35 c3hz4A_ not modelled 99.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei 36 d1qgva_ not modelled 99.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:spliceosomal protein U5-15Kd 37 d1thxa_ not modelled 99.4 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 38 c3eytA_ not modelled 99.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 39 c2ju5A_ not modelled 99.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 40 c3d22A_ 99.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h-type; PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s 41 c1w89E_ not modelled 99.4 16 PDB header:electron transport Chain: E: PDB Molecule:thioredoxin; PDBTitle: structure of the reduced form of human thioredoxin 2 42 c1v98A_ not modelled 99.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus 43 c2i4aA_ not modelled 99.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti 44 c3gnjD_ not modelled 99.4 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb 45 c3ia1A_ not modelled 99.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus 46 c2diyA_ not modelled 99.4 13 PDB header:protein binding Chain: A: PDB Molecule:thioredoxin-like protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2 47 c2xbqB_ not modelled 99.4 13 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom 48 c2f51B_ not modelled 99.4 18 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: structure of trichomonas vaginalis thioredoxin 49 c2kucA_ not modelled 99.4 14 PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron 50 d1ep7a_ not modelled 99.4 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 51 d1xwaa_ not modelled 99.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 52 c3lwaA_ not modelled 99.4 9 PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a 53 d1m7ta_ not modelled 99.4 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 54 c2vimA_ not modelled 99.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: x-ray structure of fasciola hepatica thioredoxin 55 c2o7kA_ not modelled 99.4 17 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: s. aureus thioredoxin 56 c3hczA_ not modelled 99.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible thiol-disulfide isomerase; PDBTitle: the crystal structure of a domain of possible thiol-disulfide2 isomerase from cytophaga hutchinsonii atcc 33406. 57 c2e0qA_ not modelled 99.4 16 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7 58 d1lu4a_ not modelled 99.4 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 59 c1t00A_ not modelled 99.4 15 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: the structure of thioredoxin from s. coelicolor 60 d1gh2a_ not modelled 99.4 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 61 c2vlvA_ not modelled 99.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h isoform 2.; PDBTitle: crystal structure of barley thioredoxin h isoform 2 in2 partially radiation-reduced state 62 c2fgxA_ not modelled 99.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 63 c2qsiB_ not modelled 99.4 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg; PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009 64 d1syra_ not modelled 99.4 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 65 c3gl3D_ not modelled 99.4 20 PDB header:oxidoreductase Chain: D: PDB Molecule:putative thiol:disulfide interchange protein PDBTitle: crystal structure of a putative thiol:disulfide interchange2 protein dsbe from chlorobium tepidum 66 d1fb6a_ not modelled 99.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 67 c2wz9A_ not modelled 99.4 14 PDB header:protein binding Chain: A: PDB Molecule:glutaredoxin-3; PDBTitle: crystal structure of the thioredoxin domain of human txnl2 68 d1f9ma_ not modelled 99.3 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 69 c1x5dA_ not modelled 99.3 22 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase a6 70 c3razA_ not modelled 99.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-related protein; PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b 71 d1j08a1 not modelled 99.3 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 72 d1nw2a_ not modelled 99.3 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 73 c3or5A_ not modelled 99.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 74 d1xfla_ not modelled 99.3 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 75 d1a8la1 not modelled 99.3 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 76 c3tcoA_ not modelled 99.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability 77 d1ti3a_ not modelled 99.3 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 78 c2yzuA_ not modelled 99.3 14 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of oxidized thioredoxin from thermus thermophilus2 hb8 79 d2ifqa1 not modelled 99.3 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 80 c2vm2C_ not modelled 99.3 16 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant 81 c3ed3A_ not modelled 99.3 15 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase mpd1; PDBTitle: crystal structure of the yeast dithiol/disulfide2 oxidoreductase mpd1p 82 c1zypB_ not modelled 99.3 15 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf 83 c3ewlA_ not modelled 99.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein bf1870; PDBTitle: crystal structure of conserved protein bf1870 of unknown function from2 bacteroides fragilis 84 c2r2jA_ not modelled 99.3 18 PDB header:chaperone Chain: A: PDB Molecule:thioredoxin domain-containing protein 4; PDBTitle: crystal structure of human erp44 85 d1st9a_ not modelled 99.3 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 86 c2dmlA_ not modelled 99.3 14 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6 87 d1r26a_ not modelled 99.3 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 88 c2ywiA_ not modelled 99.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus 89 c3ha9A_ not modelled 99.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized thioredoxin-like protein; PDBTitle: the 1.7a crystal structure of a thioredoxin-like protein from2 aeropyrum pernix 90 d2trxa_ not modelled 99.3 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 91 d2cvba1 not modelled 99.3 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 92 c2l5oA_ not modelled 99.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution structure of a putative thioredoxin from neisseria2 meningitidis 93 c3dmlA_ not modelled 99.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form) 94 c2albA_ not modelled 99.3 15 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57 95 c2oe0B_ not modelled 99.3 18 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin-3; PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae 96 d1v9wa_ not modelled 99.3 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 97 c3fk8A_ not modelled 99.2 16 PDB header:isomerase Chain: A: PDB Molecule:disulphide isomerase; PDBTitle: the crystal structure of disulphide isomerase from xylella fastidiosa2 temecula1 98 d2f8aa1 not modelled 99.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 99 c2j23A_ not modelled 99.2 18 PDB header:immune protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: cross-reactivity and crystal structure of malassezia2 sympodialis thioredoxin (mala s 13), a member of a new pan-3 allergen family 100 c3fkfC_ not modelled 99.2 13 PDB header:oxidoreductase Chain: C: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: thiol-disulfide oxidoreductase from bacteroides fragilis nctc 9343 101 c3cmiA_ not modelled 99.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae 102 d1jfua_ not modelled 99.2 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 103 c3apsA_ not modelled 99.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of trx4 domain of erdj5 104 c3cynC_ not modelled 99.2 9 PDB header:oxidoreductase Chain: C: PDB Molecule:probable glutathione peroxidase 8; PDBTitle: the structure of human gpx8 105 c2dizA_ not modelled 99.2 20 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain-containing protein 5; PDBTitle: the solution structure of the third thioredoxin domain of2 human thioredoxin domain-containing protein 5 106 d1woua_ not modelled 99.2 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 107 c1j08A_ not modelled 99.2 13 PDB header:isomerase Chain: A: PDB Molecule:glutaredoxin-like protein; PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii 108 d1fo5a_ not modelled 99.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 109 d2b5ea4 not modelled 99.2 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 110 c3fw2A_ not modelled 99.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: c-terminal domain of putative thiol-disulfide oxidoreductase from2 bacteroides thetaiotaomicron. 111 d1gp1a_ not modelled 99.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 112 d1uula_ not modelled 99.2 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 113 c2dj0A_ not modelled 99.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2 114 c3kcmC_ not modelled 99.1 17 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens 115 c3cxgA_ not modelled 99.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w 116 c3f8uA_ not modelled 99.1 15 PDB header:immune system/isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57; PDBTitle: tapasin/erp57 heterodimer 117 d1nhoa_ not modelled 99.1 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 118 c2he3A_ not modelled 99.1 8 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 2; PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2) 119 c2p5qA_ not modelled 99.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 5; PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in2 the reduced form 120 c3dwvB_ not modelled 99.1 12 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione peroxidase-like protein; PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase,2 oxidized form

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0