Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ9S4X0
DateThu Jan 5 12:38:24 GMT 2012
Unique Job ID9912a7446aa5aaa9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1f6va_
Top template information
Fold:C-terminal domain of B transposition protein
Superfamily:C-terminal domain of B transposition protein
Family:C-terminal domain of B transposition protein
Confidence and coverage
Confidence: 89.3% Coverage: 24%
34 residues ( 24% of your sequence) have been modelled with 89.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MYGTCETLCRELAAKYPGYTPLMLVIWSPEEIQALADGMDISLSDPEIRTVLARLEDIPE
Secondary structure 
SS confidence 
Disorder  ????
??
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DQRIESGISSAAAMEIISNVSENRQVTVPAELLASLIQTAEQALWKREWAARDYGLAVPE
Secondary structure 
SS confidence 
Disorder  ????????
??
????
??
Disorder confidence 
 
   .........130.........140....
Sequence  CVTRRQAVVNQARILLKNNTHENG
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1f6v chain A

3D model

Region: 28 - 63
Aligned: 34
Modelled: 36
Confidence: 89.3%
Identity: 18%
Fold: C-terminal domain of B transposition protein
Superfamily: C-terminal domain of B transposition protein
Family: C-terminal domain of B transposition protein

Phyre2

PDB 2vch chain A domain 1

3D model

Region: 27 - 85
Aligned: 55
Modelled: 59
Confidence: 45.7%
Identity: 18%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDPGT-like

Phyre2

PDB 3cp5 chain A

3D model

Region: 41 - 62
Aligned: 22
Modelled: 22
Confidence: 38.8%
Identity: 32%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus

Phyre2

PDB 1dvh chain A

3D model

Region: 42 - 58
Aligned: 17
Modelled: 17
Confidence: 31.7%
Identity: 18%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2l4d chain A

3D model

Region: 41 - 55
Aligned: 15
Modelled: 15
Confidence: 30.6%
Identity: 27%
PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida

Phyre2

PDB 1c53 chain A

3D model

Region: 42 - 58
Aligned: 17
Modelled: 17
Confidence: 30.5%
Identity: 18%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2zzs chain W

3D model

Region: 42 - 58
Aligned: 17
Modelled: 17
Confidence: 30.1%
Identity: 29%
PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633

Phyre2

PDB 1fcd chain C domain 1

3D model

Region: 42 - 59
Aligned: 18
Modelled: 18
Confidence: 29.4%
Identity: 6%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Two-domain cytochrome c

Phyre2

PDB 1dvv chain A

3D model

Region: 41 - 58
Aligned: 18
Modelled: 18
Confidence: 29.1%
Identity: 22%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1ynr chain A domain 1

3D model

Region: 41 - 58
Aligned: 18
Modelled: 18
Confidence: 28.8%
Identity: 17%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2f2a chain C domain 1

3D model

Region: 28 - 58
Aligned: 31
Modelled: 31
Confidence: 28.2%
Identity: 26%
Fold: Non-globular all-alpha subunits of globular proteins
Superfamily: Glu-tRNAGln amidotransferase C subunit
Family: Glu-tRNAGln amidotransferase C subunit

Phyre2

PDB 1cno chain A

3D model

Region: 42 - 59
Aligned: 18
Modelled: 18
Confidence: 28.2%
Identity: 33%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1cc5 chain A

3D model

Region: 38 - 58
Aligned: 21
Modelled: 21
Confidence: 28.1%
Identity: 19%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1a56 chain A

3D model

Region: 42 - 58
Aligned: 17
Modelled: 17
Confidence: 27.8%
Identity: 12%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1c75 chain A

3D model

Region: 41 - 58
Aligned: 18
Modelled: 18
Confidence: 27.2%
Identity: 22%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1h1o chain A domain 1

3D model

Region: 42 - 59
Aligned: 18
Modelled: 18
Confidence: 26.7%
Identity: 11%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Two-domain cytochrome c

Phyre2

PDB 2zxy chain A

3D model

Region: 41 - 58
Aligned: 18
Modelled: 18
Confidence: 26.5%
Identity: 22%
PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus

Phyre2

PDB 1m70 chain A domain 1

3D model

Region: 42 - 59
Aligned: 18
Modelled: 18
Confidence: 26.5%
Identity: 22%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Two-domain cytochrome c

Phyre2

PDB 2kvc chain A

3D model

Region: 5 - 67
Aligned: 56
Modelled: 63
Confidence: 25.9%
Identity: 25%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a

Phyre2

PDB 1wve chain C domain 1

3D model

Region: 43 - 59
Aligned: 17
Modelled: 17
Confidence: 25.4%
Identity: 24%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2
1
d1f6va_
2
d2vcha1
3
c3cp5A_
4
d1dvha_
5
c2l4dA_
6
d1c53a_
7
c2zzsW_
8
d1fcdc1
9
d1dvva_
10
d1ynra1
11
d2f2ac1
12
d1cnoa_
13
d1cc5a_
14
d1a56a_
15
d1c75a_
16
d1h1oa1
17
c2zxyA_
18
d1m70a1
19
c2kvcA_
20
d1wvec1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1f6va_
89.3 18 Fold:C-terminal domain of B transposition protein
Superfamily:C-terminal domain of B transposition protein
Family:C-terminal domain of B transposition protein
2d2vcha1
45.7 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
3c3cp5A_
38.8 32 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus
4d1dvha_
31.7 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
5c2l4dA_
30.6 27 PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
6d1c53a_
30.5 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
7c2zzsW_
30.1 29 PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
8d1fcdc1
29.4 6 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
9d1dvva_
29.1 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
10d1ynra1
28.8 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
11d2f2ac1
28.2 26 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Glu-tRNAGln amidotransferase C subunit
Family:Glu-tRNAGln amidotransferase C subunit
12d1cnoa_
28.2 33 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
13d1cc5a_
28.1 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
14d1a56a_
27.8 12 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
15d1c75a_
27.2 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
16d1h1oa1
26.7 11 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
17c2zxyA_
26.5 22 PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
18d1m70a1
26.5 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
19c2kvcA_
25.9 25 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
20d1wvec1
25.4 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
21d1h1oa2
not modelled 25.2 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
22d1cyja_
not modelled 24.3 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
23d1cora_
not modelled 24.1 5 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
24d1m70a2
not modelled 23.6 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
25d2ckxa1
not modelled 23.6 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
26d1fi3a_
not modelled 22.9 6 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
27d1f1ca_
not modelled 22.8 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
28c1w2lA_
not modelled 22.7 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome oxidase subunit ii;
PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
29d1h9xa1
not modelled 22.1 23 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
30d1ls9a_
not modelled 21.8 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
31c3o0rC_
not modelled 21.3 19 PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
32c2d0sA_
not modelled 20.9 6 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
33d1ctja_
not modelled 20.8 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
34d1gksa_
not modelled 19.7 5 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
35c3kfuJ_
not modelled 19.6 35 PDB header:ligase/rna
Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the transamidosome
36c1m70D_
not modelled 19.3 18 PDB header:electron transport
Chain: D: PDB Molecule:cytochrome c4;
PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
37d1hzua1
not modelled 19.2 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
38d1e29a_
not modelled 19.0 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
39d1dcea2
not modelled 18.9 27 Fold:C2 domain-like
Superfamily:Rab geranylgeranyltransferase alpha-subunit, insert domain
Family:Rab geranylgeranyltransferase alpha-subunit, insert domain
40d1kv9a1
not modelled 18.8 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
41c2lkyA_
not modelled 18.5 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
42c3dmiA_
not modelled 18.2 35 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
43c2zonG_
not modelled 18.1 17 PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome c551;
PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
44d3mdea2
not modelled 17.5 7 Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
45d2o3aa1
not modelled 17.3 28 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
46d1c6ra_
not modelled 17.2 30 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
47d1f1fa_
not modelled 17.1 35 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
48d1z84a1
not modelled 17.0 21 Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
49c3cu4A_
not modelled 16.9 0 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens
50c2yy8B_
not modelled 16.8 29 PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
51d1iq8a1
not modelled 16.7 14 Fold:TIM beta/alpha-barrel
Superfamily:tRNA-guanine transglycosylase
Family:tRNA-guanine transglycosylase
52c2znrA_
not modelled 16.6 37 PDB header:hydrolase
Chain: A: PDB Molecule:amsh-like protease;
PDBTitle: crystal structure of the dub domain of human amsh-lp
53c3h0mU_
not modelled 16.1 26 PDB header:ligase
Chain: U: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
54d1kx7a_
not modelled 16.1 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
55c3c4nB_
not modelled 15.6 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein dr_0571;
PDBTitle: crystal structure of dr_0571 protein from deinococcus2 radiodurans in complex with adp. northeast structural3 genomics consortium target drr125
56d1dy7b1
not modelled 15.6 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
57d1ccra_
not modelled 15.2 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
58d1e2rb1
not modelled 14.7 23 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
59d1muka_
not modelled 14.4 32 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
60c3hq2A_
not modelled 14.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:bacillus subtilis m32 carboxypeptidase;
PDBTitle: bsucp crystal structure
61d351ca_
not modelled 13.7 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
62c1w5cT_
not modelled 13.6 12 PDB header:photosynthesis
Chain: T: PDB Molecule:cytochrome c-550;
PDBTitle: photosystem ii from thermosynechococcus elongatus
63d1syya_
not modelled 13.5 40 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
64c1syyA_
not modelled 13.5 40 PDB header:replication,oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain;
PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis
65d5csma_
not modelled 13.4 13 Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
66c3dr0B_
not modelled 13.3 33 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c6;
PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002
67c2v07A_
not modelled 13.0 27 PDB header:photosynthesis
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant
68d1fcdc2
not modelled 12.8 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
69c2bpbB_
not modelled 12.5 7 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella
70c3thgA_
not modelled 12.4 14 PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain
71c1iq8B_
not modelled 11.9 12 PDB header:transferase
Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase;
PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii
72c1smqD_
not modelled 11.8 27 PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain
PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae
73d1kb0a1
not modelled 11.7 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
74d1b3qa1
not modelled 11.5 26 Fold:ROP-like
Superfamily:Homodimeric domain of signal transducing histidine kinase
Family:Homodimeric domain of signal transducing histidine kinase
75d1wi9a_
not modelled 11.4 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
76d1c6sa_
not modelled 11.4 32 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
77c1fcdD_
not modelled 11.2 12 PDB header:electron transport(flavocytochrome)
Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
78d2h7aa1
not modelled 10.9 24 Fold:YcgL-like
Superfamily:YcgL-like
Family:YcgL-like
79c1h1oA_
not modelled 10.9 18 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-552;
PDBTitle: acidithiobacillus ferrooxidans cytochrome c4 structure2 supports a complex-induced tuning of electron transfer
80d1jk0a_
not modelled 10.8 27 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
81d1sqwa2
not modelled 10.7 17 Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Nip7p homolog, N-terminal domain
82d1p7na_
not modelled 10.6 21 Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
83d2bj7a1
not modelled 10.2 28 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
84c3r1fO_
not modelled 9.8 11 PDB header:transcription
Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis
85c2zw2B_
not modelled 9.7 26 PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein sts178;
PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs)
86c3mk7F_
not modelled 9.7 17 PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
87d2hzaa1
not modelled 9.7 22 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
88d1hj3a1
not modelled 9.6 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
89d1w68a_
not modelled 9.6 23 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
90d1pbya1
not modelled 9.6 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
91c2xtsD_
not modelled 9.5 29 PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
92d2hzab1
not modelled 9.4 22 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
93d1em9a_
not modelled 8.8 21 Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
94c1k87A_
not modelled 8.8 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)
95d1c52a_
not modelled 8.8 43 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
96c2yx5A_
not modelled 8.8 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0062 protein mj1593;
PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway
97c3o0aB_
not modelled 8.8 7 PDB header:ligase
Chain: B: PDB Molecule:leucyl-trna synthetase subunit alpha;
PDBTitle: crystal structure of the wild type cp1 hydrolitic domain from aquifex2 aeolicus leucyl-trna
98d1s7ia_
not modelled 8.5 14 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:DGPF domain (Pfam 04946)
99c2dt5A_
not modelled 8.4 26 PDB header:dna binding protein
Chain: A: PDB Molecule:at-rich dna-binding protein;
PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0