Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	Y	L	R	K	A	N	E	R	G	H	A	N	H	G	W	L	D	S	W	H	T	F	S	F	A	N	Y	Y	D	P	N	F	M	G	F	S	A	L	R	V	I	N	D	D	V	I	E	A	G	Q	G	F	G	T	H	P	H	K
Secondary structure
SS confidence
Disorder		?	?				?	?			?																								?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	M	E	I	L	T	Y	V	L	E	G	T	V	E	H	Q	D	S	M	G	N	K	E	Q	V	P	A	G	E	F	Q	I	M	S	A	G	T	G	I	R	H	S	E	Y	N	P	S	S	T	E	R	L	H	L	Y	Q	I	W	I	M
Secondary structure
SS confidence
Disorder																				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	E	E	N	G	I	T	P	R	Y	E	Q	R	R	F	D	A	V	Q	G	K	Q	L	V	L	S	P	D	A	R	D	G	S	L	K	V	H	Q	D	M	E	L	Y	R	W	A	L	L	K	D	E	Q	S	V	H	Q	I	A	A	E
Secondary structure
SS confidence
Disorder							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence		R	R	V	W	I	Q	V	V	K	G	N	V	T	I	N	G	V	K	A	S	T	S	D	G	L	A	I	W	D	E	Q	A	I	S	I	H	A	D	S	D	S	E	V	L	L	F	D	L	P	P	V
Secondary structure
SS confidence
Disorder																	?																															?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tq5 chain A domain 1 Region: 1 - 231 Aligned: 231 Modelled: 226 Confidence: 100.0% Identity: 97% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Pirin-like Phyre2 PDB 2vec chain A Region: 7 - 229 Aligned: 220 Modelled: 223 Confidence: 100.0% Identity: 34% PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli Phyre2 PDB 2p17 chain A Region: 37 - 231 Aligned: 193 Modelled: 195 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pirin-like protein; PDBTitle: crystal structure of gk1651 from geobacillus kaustophilus Phyre2 PDB 1j1l chain A Region: 32 - 231 Aligned: 199 Modelled: 197 Confidence: 100.0% Identity: 21% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Pirin-like Phyre2 PDB 3o14 chain B Region: 41 - 226 Aligned: 168 Modelled: 179 Confidence: 99.2% Identity: 17% PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution Phyre2 PDB 1sfn chain A Region: 47 - 226 Aligned: 175 Modelled: 177 Confidence: 99.2% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sq4 chain A Region: 35 - 226 Aligned: 186 Modelled: 192 Confidence: 99.1% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 3h7y chain A Region: 47 - 230 Aligned: 176 Modelled: 184 Confidence: 99.0% Identity: 10% PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form Phyre2 PDB 1sef chain A Region: 42 - 226 Aligned: 181 Modelled: 183 Confidence: 98.9% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis Phyre2 PDB 1sef chain A Region: 42 - 226 Aligned: 181 Modelled: 183 Confidence: 98.9% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1rc6 chain A Region: 38 - 226 Aligned: 180 Modelled: 188 Confidence: 98.9% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 2d40 chain C Region: 47 - 231 Aligned: 180 Modelled: 170 Confidence: 98.8% Identity: 20% PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 Phyre2 PDB 1y3t chain A domain 1 Region: 38 - 229 Aligned: 189 Modelled: 192 Confidence: 98.7% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 2d40 chain A domain 1 Region: 47 - 231 Aligned: 180 Modelled: 182 Confidence: 98.7% Identity: 22% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 3rns chain A Region: 43 - 226 Aligned: 164 Modelled: 182 Confidence: 98.7% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis Phyre2 PDB 3h8u chain A Region: 24 - 129 Aligned: 102 Modelled: 106 Confidence: 98.7% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution Phyre2 PDB 2ozi chain A Region: 38 - 117 Aligned: 76 Modelled: 80 Confidence: 98.6% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 Phyre2 PDB 2vqa chain C Region: 43 - 228 Aligned: 183 Modelled: 186 Confidence: 98.4% Identity: 15% PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. Phyre2 PDB 2phd chain A domain 1 Region: 47 - 231 Aligned: 179 Modelled: 183 Confidence: 98.3% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 3i7d chain B Region: 43 - 117 Aligned: 73 Modelled: 75 Confidence: 98.2% Identity: 18% PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution Phyre2 1 d1tq5a1 2 c2vecA_ 3 c2p17A_ 4 d1j1la_ 5 c3o14B_ 6 d1sfna_ 7 d1sq4a_ 8 c3h7yA_ 9 c1sefA_ 10 d1sefa_ 11 d1rc6a_ 12 c2d40C_ 13 d1y3ta1 14 d2d40a1 15 c3rnsA_ 16 c3h8uA_ 17 c2oziA_ 18 c2vqaC_ 19 d2phda1 20 c3i7dB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tq5a1 100.0 97 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 2 c2vecA_ 100.0 34 PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli 3 c2p17A_ 100.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pirin-like protein; PDBTitle: crystal structure of gk1651 from geobacillus kaustophilus 4 d1j1la_ 100.0 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 5 c3o14B_ 99.2 17 PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution 6 d1sfna_ 99.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 7 d1sq4a_ 99.1 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 8 c3h7yA_ 99.0 10 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 9 c1sefA_ 98.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 10 d1sefa_ 98.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 11 d1rc6a_ 98.9 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 12 c2d40C_ 98.8 20 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 13 d1y3ta1 98.7 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 14 d2d40a1 98.7 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 15 c3rnsA_ 98.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 16 c3h8uA_ 98.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 17 c2oziA_ 98.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 18 c2vqaC_ 98.4 15 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 19 d2phda1 98.3 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 20 c3i7dB_ 98.2 18 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 21 d2f4pa1 not modelled 98.1 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 22 c2fqpD_ not modelled 98.1 20 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 23 d1o4ta_ not modelled 98.1 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 24 c3l2hD_ not modelled 97.9 24 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 25 c3es1A_ not modelled 97.9 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 26 d1juha_ not modelled 97.9 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 27 c3ibmB_ not modelled 97.9 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 28 c2oa2A_ not modelled 97.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 29 c3ht2A_ not modelled 97.8 22 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 30 d3bu7a1 not modelled 97.7 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 31 c3bu7A_ not modelled 97.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 32 d1vj2a_ not modelled 97.7 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 33 d1j58a_ not modelled 97.7 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 34 c2gu9B_ not modelled 97.6 21 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 35 c2q30C_ not modelled 97.6 18 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 36 d1v70a_ not modelled 97.6 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 37 c3jzvA_ not modelled 97.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 38 c1fxzC_ not modelled 97.6 16 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 39 c3kgzA_ not modelled 97.5 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 40 c2cauA_ not modelled 97.5 18 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 41 d2b8ma1 not modelled 97.5 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 42 c2vpvA_ not modelled 97.4 16 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 43 c3kscD_ not modelled 97.4 16 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 44 c3myxA_ not modelled 97.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 45 d1yhfa1 not modelled 97.3 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 46 c3kglB_ not modelled 97.3 15 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 47 c3qacA_ not modelled 97.3 18 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 48 d1lr5a_ not modelled 97.2 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 49 c2d5fB_ not modelled 97.1 14 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 50 c3cewA_ not modelled 97.1 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 51 c2ozjB_ not modelled 97.0 12 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 52 c3ebrA_ not modelled 97.0 21 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 53 c3fjsC_ not modelled 96.9 21 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 54 c2pfwB_ not modelled 96.9 11 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 55 c3bcwB_ not modelled 96.9 26 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 56 d2et1a1 not modelled 96.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 57 d1y9qa2 not modelled 96.8 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 58 c2o8qA_ not modelled 96.8 25 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 59 c2z2sD_ not modelled 96.7 40 PDB header:transcription Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr 60 c2e9qA_ not modelled 96.5 18 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 61 c3c3vA_ not modelled 96.5 13 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 62 d1uika1 not modelled 96.5 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 63 d2bnma2 not modelled 96.3 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 64 c2xlfA_ not modelled 96.3 21 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 65 c3cjxE_ not modelled 96.2 14 PDB header:unknown function Chain: E: PDB Molecule:protein of unknown function with a cupin-like fold; PDBTitle: crystal structure of a protein of unknown function with a cupin-like2 fold (reut_b4571) from ralstonia eutropha jmp134 at 2.60 a resolution 66 d1dgwa_ not modelled 96.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 67 c2i45C_ not modelled 96.2 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 68 d1j3pa_ not modelled 96.1 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 69 d2o1qa1 not modelled 96.1 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acetylacetone-cleaving enzyme-like 70 c3balB_ not modelled 96.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:acetylacetone-cleaving enzyme; PDBTitle: crystal structure of an acetylacetone dioxygenase from2 acinetobacter johnsonii 71 d3elna1 not modelled 96.0 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 72 d1x82a_ not modelled 96.0 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 73 d1yfua1 not modelled 95.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 74 d1fxza1 not modelled 95.8 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 75 c3s7eB_ not modelled 95.8 16 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 76 c2eaaB_ not modelled 95.8 16 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 77 c3ehkC_ not modelled 95.6 15 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 78 d2gm6a1 not modelled 95.2 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 79 d1uija1 not modelled 95.2 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 80 d2phla2 not modelled 95.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 81 c3d82A_ not modelled 94.9 20 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 82 c3lwcA_ not modelled 94.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 83 d1fxza2 not modelled 94.4 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 84 d2phla1 not modelled 94.4 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 85 d1o5ua_ not modelled 94.3 29 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 86 c2npiB_ not modelled 94.2 23 PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex 87 d2ic1a1 not modelled 94.1 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 88 c3esgA_ not modelled 94.1 17 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of hutd from pseudomonas fluorescens sbw25 89 d1pmia_ not modelled 94.1 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 90 d1od5a2 not modelled 94.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 91 c1uijA_ not modelled 93.1 17 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 92 d1uija2 not modelled 92.9 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 93 d1uika2 not modelled 92.7 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 94 c2qdrA_ not modelled 92.1 16 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative dioxygenase (npun_f5605) from nostoc2 punctiforme pcc 73102 at 2.60 a resolution 95 c2bnoA_ not modelled 91.6 11 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 96 c3es4B_ not modelled 91.6 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 97 d2pyta1 not modelled 91.4 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 98 c1cauB_ not modelled 90.2 17 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 99 c2qjvB_ not modelled 89.6 19 PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution 100 d1od5a1 not modelled 87.6 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 101 d1zrra1 not modelled 87.2 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 102 d1zvfa1 not modelled 86.3 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 103 c3h1yA_ not modelled 85.3 16 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 104 c3eqeB_ not modelled 82.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:putative cystein deoxygenase; PDBTitle: crystal structure of the yubc protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr112. 105 d1ylla1 not modelled 82.6 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:PA5104-like 106 c1y9qA_ not modelled 81.9 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 107 d1gp6a_ not modelled 54.9 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 108 d1xrua1 not modelled 48.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 109 d2exda1 not modelled 46.4 12 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 110 c2y0oA_ not modelled 32.5 25 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 111 d3e5ua2 not modelled 29.1 22 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 112 d1ywka1 not modelled 28.7 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 113 c1dgrX_ not modelled 28.2 19 PDB header:plant protein Chain: X: PDB Molecule:canavalin; PDBTitle: refined crystal structure of canavalin from jack bean 114 c1ywkE_ not modelled 27.1 20 PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis 115 c2k5hA_ not modelled 26.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 116 c3oepA_ not modelled 25.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 117 d1gxca_ not modelled 24.5 11 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 118 c1gxcA_ not modelled 24.5 11 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 119 d1ft9a2 not modelled 24.0 15 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:CO-sensing protein CooA, N-terminal domain 120 d2h6ca2 not modelled 23.1 17 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0