Secondary structure and disorder prediction

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Sequence		M	A	E	Q	L	E	F	F	P	V	Q	S	P	C	R	G	I	C	Q	S	D	E	R	G	F	C	R	G	C	F	R	S	R	D	E	R	F	N	W	N	K	M	S	D	G	E	K	Q	E	V	L	R	L	C	R	Q	R	L	M	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Sequence		K	L	R	A	N	K	P	A	S	S	D	E	P	E	Q	P	S	L	F
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ms6 chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 46.6% Identity: 33% PDB header:protein binding Chain: A: PDB Molecule:hepatitis b virus x-interacting protein; PDBTitle: crystal structure of hepatitis b x-interacting protein (hbxip) Phyre2 PDB 3kgk chain A Region: 20 - 43 Aligned: 24 Modelled: 24 Confidence: 35.7% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd Phyre2 PDB 1mxr chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 29.5% Identity: 14% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1yfd chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 27.8% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli Phyre2 PDB 1r2f chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 25.7% Identity: 23% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3ee4 chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 25.0% Identity: 41% PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis Phyre2 PDB 2o1z chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 25.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) Phyre2 PDB 1r2f chain B Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 24.3% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium Phyre2 PDB 1uw0 chain A Region: 32 - 77 Aligned: 46 Modelled: 46 Confidence: 24.2% Identity: 13% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: PARP-type zinc finger Phyre2 PDB 2vux chain B Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 24.1% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b Phyre2 PDB 3pqa chain A Region: 6 - 62 Aligned: 57 Modelled: 57 Confidence: 23.5% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 Phyre2 PDB 1w68 chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 23.2% Identity: 9% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3ktb chain D Region: 20 - 43 Aligned: 24 Modelled: 24 Confidence: 23.1% Identity: 8% PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 Phyre2 PDB 2rcc chain C Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 23.0% Identity: 5% PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution Phyre2 PDB 1oqu chain C Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 22.9% Identity: 27% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1vlu chain B Region: 37 - 62 Aligned: 26 Modelled: 26 Confidence: 22.9% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution Phyre2 PDB 3hf1 chain B Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 22.5% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 Phyre2 PDB 1uzr chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 22.5% Identity: 27% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1o20 chain A Region: 37 - 62 Aligned: 26 Modelled: 26 Confidence: 22.4% Identity: 12% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1h0o chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 22.1% Identity: 9% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state Phyre2 1 c3ms6A_ 2 c3kgkA_ 3 d1mxra_ 4 c1yfdA_ 5 d1r2fa_ 6 c3ee4A_ 7 c2o1zA_ 8 c1r2fB_ 9 d1uw0a_ 10 c2vuxB_ 11 c3pqaA_ 12 d1w68a_ 13 c3ktbD_ 14 c2rccC_ 15 d1oquc_ 16 c1vluB_ 17 c3hf1B_ 18 d1uzra_ 19 d1o20a_ 20 c1h0oA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ms6A_ 46.6 33 PDB header:protein binding Chain: A: PDB Molecule:hepatitis b virus x-interacting protein; PDBTitle: crystal structure of hepatitis b x-interacting protein (hbxip) 2 c3kgkA_ 35.7 21 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 3 d1mxra_ 29.5 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 4 c1yfdA_ 27.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli 5 d1r2fa_ 25.7 23 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 6 c3ee4A_ 25.0 41 PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis 7 c2o1zA_ 25.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) 8 c1r2fB_ 24.3 23 PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium 9 d1uw0a_ 24.2 13 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:PARP-type zinc finger 10 c2vuxB_ 24.1 23 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b 11 c3pqaA_ 23.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 12 d1w68a_ 23.2 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 13 c3ktbD_ 23.1 8 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 14 c2rccC_ 23.0 5 PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution 15 d1oquc_ 22.9 27 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 16 c1vluB_ 22.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution 17 c3hf1B_ 22.5 23 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 18 d1uzra_ 22.5 27 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 19 d1o20a_ 22.4 12 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 20 c1h0oA_ 22.1 9 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state 21 c3ry0A_ not modelled 21.8 12 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 22 d1bjpa_ not modelled 21.3 21 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 23 d3dhza1 not modelled 21.2 27 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 24 d2doaa1 not modelled 19.7 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ELL N2 domain-like 25 d1otfa_ not modelled 19.2 16 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 26 c2op8A_ not modelled 19.2 10 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 27 c3fghA_ not modelled 19.1 23 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 28 d1v54d_ not modelled 17.8 42 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 29 c2y69Q_ not modelled 17.8 42 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 30 c3mb2G_ not modelled 17.7 12 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 31 c3r64A_ not modelled 17.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum 32 c2e5nA_ not modelled 16.4 10 PDB header:transcription Chain: A: PDB Molecule:rna polymerase ii elongation factor ell2; PDBTitle: solution structure of the ell_n2 domain of target of rna2 polymerase ii elongation factor ell2 33 d1vlua_ not modelled 16.1 12 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 34 c1v9xA_ not modelled 16.1 11 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase; PDBTitle: solution structure of the first zn-finger domain of2 poly(adp-ribose) polymerase-1 35 c2kzyA_ not modelled 16.0 26 PDB header:metal binding protein Chain: A: PDB Molecule:zfand5 protein (zinc finger protein 216 (predicted), PDBTitle: solution nmr structure of the znf216 a20 zinc finger 36 c3ed6B_ not modelled 15.4 12 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 37 c3v4cB_ not modelled 15.3 15 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 38 d1uzba_ not modelled 14.9 13 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 39 d1bc6a_ not modelled 14.8 39 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 40 c2zetD_ not modelled 14.8 16 PDB header:signaling protein Chain: D: PDB Molecule:melanophilin; PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin 41 c2eqzA_ not modelled 14.6 22 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 42 c3m20A_ not modelled 14.4 16 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 43 c2ormA_ not modelled 14.4 16 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. 44 c1j3xA_ not modelled 13.8 26 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 45 d1j3xa_ not modelled 13.8 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 46 d1wt8a1 not modelled 13.8 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 47 c2x4kB_ not modelled 13.4 16 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) 48 c2h5gA_ not modelled 13.4 7 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 49 d1k99a_ not modelled 13.3 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 50 d1o9ja_ not modelled 13.2 17 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 51 c2d4eB_ not modelled 13.1 11 PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 52 c2co9A_ not modelled 13.1 15 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 53 c2crjA_ not modelled 13.1 27 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 54 d1smsa_ not modelled 12.9 20 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 55 d1jk0b_ not modelled 12.9 18 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 56 d1bi9a_ not modelled 12.7 23 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 57 d1ad3a_ not modelled 12.6 12 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 58 d1oqen_ not modelled 12.5 25 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 59 c2k9mA_ not modelled 12.4 22 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 60 c3k9dD_ not modelled 12.2 8 PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e 61 c3odeA_ not modelled 12.1 8 PDB header:dna binding protein/dna Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna 62 c2w8qA_ not modelled 11.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. 63 d1o04a_ not modelled 11.9 16 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 64 c3qpiA_ not modelled 11.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:chlorite dismutase; PDBTitle: crystal structure of dimeric chlorite dismutases from nitrobacter2 winogradskyi 65 c3abfB_ not modelled 11.7 16 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 66 c3b4wA_ not modelled 11.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 67 c3k2wD_ not modelled 11.7 21 PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c 68 c3qanB_ not modelled 11.6 15 PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans 69 c2jg7G_ not modelled 11.6 19 PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity 70 c2hg2A_ not modelled 11.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase 71 d1bxsa_ not modelled 11.3 20 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 72 d1ag8a_ not modelled 11.2 20 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 73 d1gt0d_ not modelled 11.1 14 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 74 c3lnsD_ not modelled 10.9 11 PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct 75 c3ju8B_ not modelled 10.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 76 c2ivfB_ not modelled 10.7 28 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 77 c1wz6A_ not modelled 10.7 19 PDB header:transcription Chain: A: PDB Molecule:hmg-box transcription factor bbx; PDBTitle: solution structure of the hmg_box domain of murine bobby2 sox homolog 78 c2p1iA_ not modelled 10.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) 79 c2dmjA_ not modelled 10.7 12 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1; PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1 80 d1mwwa_ not modelled 10.7 17 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:Hypothetical protein HI1388.1 81 d1lwma_ not modelled 10.7 19 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 82 d3c7bb1 not modelled 10.4 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 83 c2cs1A_ not modelled 10.3 23 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 84 c2c7mA_ not modelled 9.9 39 PDB header:protein-binding Chain: A: PDB Molecule:rab guanine nucleotide exchange factor 1; PDBTitle: human rabex-5 residues 1-74 in complex with ubiquitin 85 c2kn0A_ not modelled 9.8 36 PDB header:apoptosis Chain: A: PDB Molecule:fn14; PDBTitle: solution nmr structure of xenopus fn14 86 c3iwkB_ not modelled 9.8 21 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 87 c2gmhA_ not modelled 9.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 88 c2k9lA_ not modelled 9.8 24 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 89 d1hsma_ not modelled 9.7 15 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 90 c1mv4B_ not modelled 9.5 36 PDB header:de novo protein Chain: B: PDB Molecule:tropomyosin 1 alpha chain; PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin 91 d2c7na1 not modelled 9.5 39 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:A20-like zinc finger 92 c1hmfA_ not modelled 9.4 15 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 93 d1hmfa_ not modelled 9.4 15 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 94 d1a4sa_ not modelled 9.4 19 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 95 c2vroB_ not modelled 9.2 12 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 96 c3mhsE_ not modelled 9.2 29 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 97 c3ifgH_ not modelled 9.1 15 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 98 c1t90B_ not modelled 9.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 99 c3my7A_ not modelled 9.0 8 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0