Email l.a.kelley@imperial.ac.uk Description P39277 Date Thu Jan 5 11:58:47 GMT 2012 Unique Job ID 94f32dd48a00c814

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3giaA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 2 c3lrcC_ 100.0 21 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 3 c2jlnA_ 99.9 9 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 4 c2xq2A_ 99.1 13 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 5 c3dh4A_ 98.9 12 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 6 c2w8aC_ 97.0 16 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 7 d2a65a1 96.6 13 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 8 c3hfxA_ 95.2 11 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 9 c2kncA_ 15.0 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 10 c1m57H_ 13.2 17 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 11 d1fftc_ 10.5 13 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 12 d1fftb2 10.2 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 13 c1qleB_ 9.9 10 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 14 d3ehbb2 9.4 20 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 15 c2k9yA_ 9.4 28 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 16 c2k9yB_ 9.4 28 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 17 c2k1aA_ 9.1 26 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 18 d1dt9a3 9.0 50 Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 19 c2l1uA_ 8.9 22 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein 20 c3b71E_ 8.7 44 PDB header:protein binding Chain: E: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: cd4 endocytosis motif bound to the focal adhesion targeting (fat)2 domain of the focal adhesion kinase 21 c3b71D_ not modelled 8.7 44 PDB header:protein binding Chain: D: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: cd4 endocytosis motif bound to the focal adhesion targeting (fat)2 domain of the focal adhesion kinase 22 c3rceA_ not modelled 8.5 19 PDB header:transferase/peptide Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins; PDBTitle: bacterial oligosaccharyltransferase pglb 23 d3dtub2 not modelled 8.3 20 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 24 c3qe7A_ not modelled 8.3 13 PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa 25 c3e20C_ not modelled 8.0 40 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 26 c2kfeA_ not modelled 7.9 56 PDB header:antimicrobial protein Chain: A: PDB Molecule:meucin-24; PDBTitle: solution structure of meucin-24 27 d1xg8a_ not modelled 7.7 5 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like 28 d2obpa1 not modelled 7.7 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ReutB4095-like 29 c2k21A_ not modelled 7.4 10 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 30 d1t98a2 not modelled 7.2 8 Fold:STAT-like Superfamily:MukF C-terminal domain-like Family:MukF C-terminal domain-like 31 c1ar1B_ not modelled 7.1 20 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 32 d2cmyb1 not modelled 7.1 29 Fold:Toxic hairpin Superfamily:VhTI-like Family:VhTI-like 33 c2cmyB_ not modelled 7.1 29 PDB header:hydrolase Chain: B: PDB Molecule:veronica hederifolia trypsin inhibitor; PDBTitle: crystal complex between bovine trypsin and veronica2 hederifolia trypsin inhibitor 34 d1vc4a_ not modelled 6.9 40 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 35 c1ujlA_ not modelled 6.8 11 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 36 d1xmec1 not modelled 6.6 23 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 37 d1ic8a2 not modelled 6.2 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain 38 c3dwuA_ not modelled 6.1 60 PDB header:biosynthetic protein Chain: A: PDB Molecule:elongation factor tu-b; PDBTitle: transition-state model conformation of the switch i region2 fitted into the cryo-em map of the eef2.80s.alf4.gdp3 complex 39 d1a53a_ not modelled 6.0 40 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 40 d1iwpa_ not modelled 6.0 44 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit 41 d1eexa_ not modelled 6.0 33 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit 42 c2cpbA_ not modelled 5.9 12 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 43 c1t0fC_ not modelled 5.8 20 PDB header:dna binding protein Chain: C: PDB Molecule:transposon tn7 transposition protein tnsc; PDBTitle: crystal structure of the tnsa/tnsc(504-555) complex 44 c2rddB_ not modelled 5.7 10 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 45 d1efea_ not modelled 5.6 20 Fold:Insulin-like Superfamily:Insulin-like Family:Insulin-like 46 d2iuba2 not modelled 5.6 20 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 47 d1joya_ not modelled 5.5 15 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 48 c1unhD_ not modelled 5.5 11 PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. 49 d1lr7a1 not modelled 5.4 12 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:Follistatin (FS) module N-terminal domain, FS-N 50 d1unld_ not modelled 5.4 11 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 51 d2nr9a1 not modelled 5.4 9 Fold:Rhomboid-like Superfamily:Rhomboid-like Family:Rhomboid-like 52 d1eah1_ not modelled 5.3 57 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 53 d1pmxa_ not modelled 5.2 40 Fold:Insulin-like Superfamily:Insulin-like Family:Insulin-like 54 d1j75a_ not modelled 5.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 55 c2qtyB_ not modelled 5.1 23 PDB header:hydrolase Chain: B: PDB Molecule:poly(adp-ribose) glycohydrolase arh3; PDBTitle: crystal structure of mouse adp-ribosylhydrolase 3 (marh3)