Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	T	Q	K	P	A	D	V	T	A	E	R	R	S	H	W	W	W	T	V	P	G	C	L	A	M	V	L	L	N	A	A	V	S	Y	G	I	V	R	L	N	A	P	V	T	V	A	F	N	M	K	Q	T	V	D	A	F	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	S	A	S	Q	K	Q	L	S	E	A	Q	S	K	A	L	S	A	R	F	N	T	A	L	E	A	S	L	Q	A	W	Q	Q	K	H	H	A	V	I	L	V	S	P	A	V	V	Q	G	A	P	D	I	S	R	E	I	Q	Q	D	I
Secondary structure
SS confidence
Disorder						?	?	?	?	?																																			?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		A	R	R	M	R	A	E	P
Secondary structure
SS confidence
Disorder					?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1u2m chain A Region: 47 - 120 Aligned: 74 Modelled: 74 Confidence: 81.7% Identity: 9% Fold: OmpH-like Superfamily: OmpH-like Family: OmpH-like Phyre2 PDB 2kkm chain A Region: 59 - 128 Aligned: 67 Modelled: 70 Confidence: 75.1% Identity: 19% PDB header:translation Chain: A: PDB Molecule:translation machinery-associated protein 16; PDBTitle: solution nmr structure of yeast protein yor252w [residues2 38-178]: northeast structural genomics consortium target3 yt654 Phyre2 PDB 2amy chain A domain 1 Region: 43 - 101 Aligned: 42 Modelled: 54 Confidence: 40.1% Identity: 21% Fold: HAD-like Superfamily: HAD-like Family: Predicted hydrolases Cof Phyre2 PDB 3nuq chain A Region: 42 - 96 Aligned: 55 Modelled: 55 Confidence: 36.8% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:putative nucleotide phosphatase; PDBTitle: structure of a putative nucleotide phosphatase from saccharomyces2 cerevisiae Phyre2 PDB 1nh2 chain D domain 1 Region: 52 - 89 Aligned: 35 Modelled: 38 Confidence: 31.1% Identity: 11% Fold: Transcription factor IIA (TFIIA), alpha-helical domain Superfamily: Transcription factor IIA (TFIIA), alpha-helical domain Family: Transcription factor IIA (TFIIA), alpha-helical domain Phyre2 PDB 1nvp chain D domain 1 Region: 52 - 90 Aligned: 36 Modelled: 39 Confidence: 30.9% Identity: 17% Fold: Transcription factor IIA (TFIIA), alpha-helical domain Superfamily: Transcription factor IIA (TFIIA), alpha-helical domain Family: Transcription factor IIA (TFIIA), alpha-helical domain Phyre2 PDB 2cbi chain A domain 1 Region: 49 - 87 Aligned: 39 Modelled: 39 Confidence: 26.9% Identity: 23% Fold: Hyaluronidase domain-like Superfamily: Hyaluronidase post-catalytic domain-like Family: Hyaluronidase post-catalytic domain-like Phyre2 PDB 1eb7 chain A domain 2 Region: 51 - 84 Aligned: 33 Modelled: 34 Confidence: 26.7% Identity: 21% Fold: Cytochrome c Superfamily: Cytochrome c Family: Di-heme cytochrome c peroxidase Phyre2 PDB 3o5c chain A Region: 51 - 84 Aligned: 33 Modelled: 34 Confidence: 24.2% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis Phyre2 PDB 1nvp chain D Region: 52 - 90 Aligned: 36 Modelled: 39 Confidence: 24.1% Identity: 17% PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex Phyre2 PDB 1xvi chain A Region: 43 - 103 Aligned: 44 Modelled: 61 Confidence: 23.5% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12 Phyre2 PDB 1xvi chain A Region: 43 - 103 Aligned: 44 Modelled: 54 Confidence: 23.5% Identity: 25% Fold: HAD-like Superfamily: HAD-like Family: Predicted hydrolases Cof Phyre2 PDB 1zzh chain A Region: 51 - 84 Aligned: 33 Modelled: 34 Confidence: 23.1% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c peroxidase; PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus Phyre2 PDB 2fnc chain A Region: 51 - 96 Aligned: 43 Modelled: 46 Confidence: 20.9% Identity: 14% PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. Phyre2 PDB 2qti chain A domain 1 Region: 55 - 90 Aligned: 36 Modelled: 36 Confidence: 20.0% Identity: 14% Fold: YejL-like Superfamily: YejL-like Family: YejL-like Phyre2 PDB 1v92 chain A Region: 53 - 96 Aligned: 41 Modelled: 44 Confidence: 20.0% Identity: 10% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TAP-C domain-like Phyre2 PDB 2vhd chain B Region: 51 - 84 Aligned: 33 Modelled: 34 Confidence: 19.9% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form Phyre2 PDB 1iqc chain A domain 2 Region: 51 - 84 Aligned: 33 Modelled: 34 Confidence: 19.8% Identity: 12% Fold: Cytochrome c Superfamily: Cytochrome c Family: Di-heme cytochrome c peroxidase Phyre2 PDB 2dal chain A Region: 52 - 91 Aligned: 37 Modelled: 40 Confidence: 19.4% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein kiaa0794; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein Phyre2 PDB 1b4u chain B Region: 75 - 128 Aligned: 52 Modelled: 54 Confidence: 18.6% Identity: 8% Fold: Phosphorylase/hydrolase-like Superfamily: LigB-like Family: LigB-like Phyre2 1 d1u2ma_ 2 c2kkmA_ 3 d2amya1 4 c3nuqA_ 5 d1nh2d1 6 d1nvpd1 7 d2cbia1 8 d1eb7a2 9 c3o5cA_ 10 c1nvpD_ 11 c1xviA_ 12 d1xvia_ 13 c1zzhA_ 14 c2fncA_ 15 d2qtia1 16 d1v92a_ 17 c2vhdB_ 18 d1iqca2 19 c2dalA_ 20 d1b4ub_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1u2ma_ 81.7 9 Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like 2 c2kkmA_ 75.1 19 PDB header:translation Chain: A: PDB Molecule:translation machinery-associated protein 16; PDBTitle: solution nmr structure of yeast protein yor252w [residues2 38-178]: northeast structural genomics consortium target3 yt654 3 d2amya1 40.1 21 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 4 c3nuqA_ 36.8 11 PDB header:hydrolase Chain: A: PDB Molecule:putative nucleotide phosphatase; PDBTitle: structure of a putative nucleotide phosphatase from saccharomyces2 cerevisiae 5 d1nh2d1 31.1 11 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 6 d1nvpd1 30.9 17 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 7 d2cbia1 26.9 23 Fold:Hyaluronidase domain-like Superfamily:Hyaluronidase post-catalytic domain-like Family:Hyaluronidase post-catalytic domain-like 8 d1eb7a2 26.7 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 9 c3o5cA_ 24.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 10 c1nvpD_ 24.1 17 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex 11 c1xviA_ 23.5 25 PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12 12 d1xvia_ 23.5 25 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 13 c1zzhA_ 23.1 18 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c peroxidase; PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus 14 c2fncA_ 20.9 14 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. 15 d2qtia1 20.0 14 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 16 d1v92a_ 20.0 10 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 17 c2vhdB_ 19.9 21 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form 18 d1iqca2 19.8 12 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 19 c2dalA_ 19.4 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein kiaa0794; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein 20 d1b4ub_ 18.6 8 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 21 c3kfuJ_ not modelled 18.5 14 PDB header:ligase/rna Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c; PDBTitle: crystal structure of the transamidosome 22 d2jrxa1 not modelled 18.1 21 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 23 d2f2ac1 not modelled 17.9 11 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Glu-tRNAGln amidotransferase C subunit Family:Glu-tRNAGln amidotransferase C subunit 24 c1nh2D_ not modelled 17.9 11 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia small chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 25 d2choa1 not modelled 16.7 15 Fold:Hyaluronidase domain-like Superfamily:Hyaluronidase post-catalytic domain-like Family:Hyaluronidase post-catalytic domain-like 26 d1nmla2 not modelled 16.2 15 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 27 c2q9rA_ not modelled 15.7 14 PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function; PDBTitle: crystal structure of a duf416 family protein (sbal_3149) from2 shewanella baltica os155 at 1.91 a resolution 28 c3anoA_ not modelled 15.6 22 PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv 29 d2juwa1 not modelled 15.5 15 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 30 d2juza1 not modelled 15.4 14 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 31 c3h0mU_ not modelled 15.3 11 PDB header:ligase Chain: U: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c; PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus 32 d2jpqa1 not modelled 14.7 21 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 33 c2kjwA_ not modelled 14.1 22 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 34 d2c42a1 not modelled 13.9 18 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:PFOR Pyr module 35 c3mpoD_ not modelled 13.8 36 PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis 36 c2c1uB_ not modelled 13.7 15 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 37 c1iqcB_ not modelled 13.4 12 PDB header:oxidoreductase Chain: B: PDB Molecule:di-heme peroxidase; PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea 38 c3c8mA_ not modelled 12.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium 39 c3hq7A_ not modelled 12.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 40 d1zyma1 not modelled 11.9 17 Fold:SAM domain-like Superfamily:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Family:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 41 d1u7pa_ not modelled 11.7 20 Fold:HAD-like Superfamily:HAD-like Family:Magnesium-dependent phosphatase-1, Mdp1 42 c1odpA_ not modelled 11.2 43 PDB header:lipid transport Chain: A: PDB Molecule:apoa-i peptide; PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40 43 c1odrA_ not modelled 11.2 43 PDB header:lipid transport Chain: A: PDB Molecule:apoa-i peptide; PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40 44 c1odqA_ not modelled 11.2 43 PDB header:lipid transport Chain: A: PDB Molecule:apoa-i peptide; PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40 45 c1lj2C_ not modelled 10.8 60 PDB header:viral protein/ translation Chain: C: PDB Molecule:eukaryotic protein synthesis initiation factor; PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization 46 c3do5A_ not modelled 10.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution 47 d2fuea1 not modelled 10.7 15 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 48 d1gefa_ not modelled 10.4 23 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 49 d1xuba1 not modelled 10.4 38 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 50 c3ingA_ not modelled 10.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase (np_394635.1) from2 thermoplasma acidophilum at 1.95 a resolution 51 c3mtjA_ not modelled 10.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 52 d1x4pa1 not modelled 9.7 20 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 53 d1ltqa1 not modelled 9.5 27 Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase 54 c2p11A_ not modelled 9.4 14 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative haloacid dehalogenase-like hydrolase2 (bxe_b1342) from burkholderia xenovorans lb400 at 2.20 a resolution 55 c1zzvA_ not modelled 9.3 16 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli. 56 c3rsiA_ not modelled 9.2 7 PDB header:isomerase Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: the structure of a putative enoyl-coa hydratase/isomerase from2 mycobacterium abscessus atcc 19977 / dsm 44196 57 c1lj2D_ not modelled 8.9 60 PDB header:viral protein/ translation Chain: D: PDB Molecule:eukaryotic protein synthesis initiation factor; PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization 58 d2hcfa1 not modelled 8.9 23 Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like 59 d1qy9a1 not modelled 8.7 36 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 60 c2iexA_ not modelled 8.6 14 PDB header:lyase Chain: A: PDB Molecule:dihydroxynapthoic acid synthetase; PDBTitle: crystal structure of dihydroxynapthoic acid synthetase (gk2873) from2 geobacillus kaustophilus hta426 61 c1nmlA_ not modelled 8.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 62 c1or7C_ not modelled 8.5 14 PDB header:transcription Chain: C: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea 63 d1or7c_ not modelled 8.5 14 Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA 64 d2otaa1 not modelled 8.5 21 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 65 d1ng6a_ not modelled 8.4 16 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/YqeY domain 66 d1mkza_ not modelled 8.2 23 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 67 c3nzqB_ not modelled 8.1 19 PDB header:lyase Chain: B: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600 68 d1w85b1 not modelled 8.1 18 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 69 d2odfa1 not modelled 8.1 21 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FGase-like 70 c2d1uA_ not modelled 7.8 16 PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli 71 d1y5ea1 not modelled 7.6 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 72 c3pgvB_ not modelled 7.4 17 PDB header:hydrolase Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase2 (kpn_04322) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at3 2.39 a resolution 73 d1rkqa_ not modelled 7.4 30 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 74 c3fduF_ not modelled 7.3 10 PDB header:isomerase Chain: F: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a putative enoyl-coa hydratase/isomerase from2 acinetobacter baumannii 75 d1mula_ not modelled 7.3 25 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 76 d1nm8a1 not modelled 7.1 30 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 77 d1t1ua1 not modelled 7.1 30 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 78 d1ndba1 not modelled 6.4 30 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 79 d1s7za_ not modelled 6.3 20 Fold:Another 3-helical bundle Superfamily:B-form DNA mimic Ocr Family:B-form DNA mimic Ocr 80 c2qniA_ not modelled 6.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu0299; PDBTitle: crystal structure of uncharacterized protein atu0299 81 d1nnla_ not modelled 6.3 27 Fold:HAD-like Superfamily:HAD-like Family:Phosphoserine phosphatase 82 c1no1C_ not modelled 6.1 30 PDB header:replication Chain: C: PDB Molecule:replisome organizer; PDBTitle: structure of truncated variant of b.subtilis spp1 phage g39p helicase2 loader/inhibitor protein 83 d1no1a_ not modelled 6.1 30 Fold:Replisome organizer (g39p helicase loader/inhibitor protein) Superfamily:Replisome organizer (g39p helicase loader/inhibitor protein) Family:Replisome organizer (g39p helicase loader/inhibitor protein) 84 c2l2dA_ not modelled 6.0 21 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 7a; PDBTitle: solution nmr structure of human uba-like domain of otud7a_11_83, nesg2 target ht6304a/ocsp target otud7a_11_83/sgc-toronto 85 c3fxeA_ not modelled 6.0 35 PDB header:unknown function Chain: A: PDB Molecule:protein icmq; PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative) 86 d1vcoa2 not modelled 5.7 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 87 c1q6xA_ not modelled 5.6 30 PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: crystal structure of rat choline acetyltransferase 88 d2vo1a1 not modelled 5.5 38 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 89 d2q7sa1 not modelled 5.4 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:FGase-like 90 d1wr8a_ not modelled 5.4 12 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 91 c3fkeB_ not modelled 5.2 12 PDB header:rna binding protein Chain: B: PDB Molecule:polymerase cofactor vp35; PDBTitle: structure of the ebola vp35 interferon inhibitory domain 92 d1rkua_ not modelled 5.2 0 Fold:HAD-like Superfamily:HAD-like Family:Homoserine kinase ThrH 93 d1l6ra_ not modelled 5.2 22 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 94 d1huua_ not modelled 5.2 7 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 95 c3fvvA_ not modelled 5.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein with unknown function from2 bordetella pertussis tohama i 96 d1u02a_ not modelled 5.1 6 Fold:HAD-like Superfamily:HAD-like Family:Trehalose-phosphatase 97 c3l7yA_ not modelled 5.0 13 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1108c; PDBTitle: the crystal structure of smu.1108c from streptococcus mutans ua159

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0