Secondary structure and disorder prediction

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Sequence		M	N	K	D	S	T	Q	T	W	G	L	K	R	D	I	T	P	C	F	G	A	R	L	V	Q	E	G	H	R	L	H	F	L	A	D	R	A	G	F	T	G	S	F	S	E	V	Q	T	L	Q	L	D	E	A	F	P	H	F	V	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Sequence		H	L	E	L	M	L	L	S	C	E	L	N	P	R	Y	A	H	C	V	T	L	Y	R	N	G	L	T	G	E	A	D	T	L	G	S	H	G	Y	V	Y	I	A	I	L	N	R	H	G	F	N	R	H	L	R	V	I
Secondary structure
SS confidence
Disorder						?	?	?		?																																				?	?		?		?	?	?	?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ea9 chain A domain 1 Region: 5 - 103 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 66% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2inw chain A domain 1 Region: 7 - 103 Aligned: 97 Modelled: 97 Confidence: 100.0% Identity: 64% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2h28 chain A domain 1 Region: 7 - 103 Aligned: 97 Modelled: 97 Confidence: 100.0% Identity: 61% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 1ryb chain A Region: 41 - 70 Aligned: 30 Modelled: 30 Confidence: 57.1% Identity: 27% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 2z2j chain A Region: 41 - 69 Aligned: 29 Modelled: 29 Confidence: 48.1% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis Phyre2 PDB 3nea chain A Region: 41 - 69 Aligned: 29 Modelled: 29 Confidence: 34.3% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis Phyre2 PDB 3v2i chain A Region: 41 - 69 Aligned: 29 Modelled: 29 Confidence: 31.6% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis Phyre2 PDB 2pth chain A Region: 41 - 69 Aligned: 29 Modelled: 29 Confidence: 28.5% Identity: 17% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 3h3y chain F Region: 87 - 108 Aligned: 21 Modelled: 22 Confidence: 24.5% Identity: 29% PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate Phyre2 PDB 1du0 chain A Region: 42 - 55 Aligned: 14 Modelled: 14 Confidence: 21.2% Identity: 36% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1lpb chain A domain 2 Region: 85 - 91 Aligned: 7 Modelled: 7 Confidence: 19.5% Identity: 71% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Colipase-like Family: Colipase-like Phyre2 PDB 2yqk chain A Region: 34 - 55 Aligned: 22 Modelled: 22 Confidence: 17.7% Identity: 9% PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats Phyre2 PDB 1p7j chain B Region: 42 - 55 Aligned: 14 Modelled: 14 Confidence: 16.8% Identity: 36% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1mh3 chain A domain 1 Region: 38 - 55 Aligned: 18 Modelled: 18 Confidence: 16.3% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 3aqo chain D Region: 36 - 71 Aligned: 25 Modelled: 36 Confidence: 16.3% Identity: 32% PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export Phyre2 PDB 1s7e chain A domain 1 Region: 40 - 55 Aligned: 16 Modelled: 16 Confidence: 15.6% Identity: 31% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1le8 chain A Region: 40 - 55 Aligned: 16 Modelled: 16 Confidence: 15.5% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1xv2 chain A Region: 16 - 41 Aligned: 26 Modelled: 26 Confidence: 15.5% Identity: 27% Fold: AF0104/ALDC/Ptd012-like Superfamily: AF0104/ALDC/Ptd012-like Family: Alpha-acetolactate decarboxylase-like Phyre2 PDB 1n8s chain C Region: 85 - 99 Aligned: 14 Modelled: 15 Confidence: 14.9% Identity: 43% PDB header:hydrolase Chain: C: PDB Molecule:colipase ii; PDBTitle: structure of the pancreatic lipase-colipase complex Phyre2 PDB 3d59 chain B Region: 90 - 108 Aligned: 19 Modelled: 19 Confidence: 13.9% Identity: 32% PDB header:hydrolase Chain: B: PDB Molecule:platelet-activating factor acetylhydrolase; PDBTitle: crystal structure of human plasma platelet activating2 factor acetylhydrolase Phyre2 1 d2ea9a1 2 d2inwa1 3 d2h28a1 4 d1ryba_ 5 c2z2jA_ 6 c3neaA_ 7 c3v2iA_ 8 d2ptha_ 9 c3h3yF_ 10 d1du0a_ 11 d1lpba2 12 c2yqkA_ 13 d1p7jb_ 14 d1mh3a1 15 c3aqoD_ 16 d1s7ea1 17 d1le8a_ 18 d1xv2a_ 19 c1n8sC_ 20 c3d59B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ea9a1 100.0 66 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 2 d2inwa1 100.0 64 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 3 d2h28a1 100.0 61 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 4 d1ryba_ 57.1 27 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 5 c2z2jA_ 48.1 10 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 6 c3neaA_ 34.3 17 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 7 c3v2iA_ 31.6 10 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 8 d2ptha_ 28.5 17 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 9 c3h3yF_ 24.5 29 PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate 10 d1du0a_ 21.2 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 11 d1lpba2 19.5 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 12 c2yqkA_ 17.7 9 PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats 13 d1p7jb_ 16.8 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 14 d1mh3a1 16.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 15 c3aqoD_ 16.3 32 PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export 16 d1s7ea1 15.6 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 17 d1le8a_ 15.5 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 18 d1xv2a_ 15.5 27 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:Alpha-acetolactate decarboxylase-like 19 c1n8sC_ 14.9 43 PDB header:hydrolase Chain: C: PDB Molecule:colipase ii; PDBTitle: structure of the pancreatic lipase-colipase complex 20 c3d59B_ 13.9 32 PDB header:hydrolase Chain: B: PDB Molecule:platelet-activating factor acetylhydrolase; PDBTitle: crystal structure of human plasma platelet activating2 factor acetylhydrolase 21 d1e3oc1 not modelled 13.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 22 d2e7ga1 not modelled 13.6 16 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 23 d2d81a1 not modelled 12.6 28 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PHB depolymerase-like 24 d1au7a1 not modelled 11.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 25 c3a03A_ not modelled 11.6 46 PDB header:gene regulation Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2; PDBTitle: crystal structure of hox11l1 homeodomain 26 c3hruA_ not modelled 11.4 26 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 27 d1p7ia_ not modelled 10.9 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 28 d1f43a_ not modelled 10.7 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 29 d2hrkb1 not modelled 10.4 15 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Arc1p N-terminal domain-like 30 d1sana_ not modelled 10.4 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 31 d1ftza_ not modelled 10.0 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 32 c3fhkF_ not modelled 9.9 28 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:upf0403 protein yphp; PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide2 isomerase 33 d2hq2a1 not modelled 9.8 26 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 34 d9anta_ not modelled 9.7 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 35 d1jgga_ not modelled 9.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 36 d1yz8p1 not modelled 9.5 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 37 d1lfba_ not modelled 9.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 38 d1fjla_ not modelled 9.0 38 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 39 d2o5ha1 not modelled 9.0 24 Fold:NMB0513-like Superfamily:NMB0513-like Family:NMB0513-like 40 c2dmqA_ not modelled 9.0 25 PDB header:dna binding protein Chain: A: PDB Molecule:lim/homeobox protein lhx9; PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9 41 d1ocpa_ not modelled 8.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 42 c2l9rA_ not modelled 8.8 25 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 43 d2craa1 not modelled 8.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 44 d1wh5a_ not modelled 8.6 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 45 d2hddb_ not modelled 8.6 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 46 c2dmuA_ not modelled 8.5 25 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 47 d1g3wa2 not modelled 8.4 14 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 48 d2obba1 not modelled 8.2 31 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 49 d1ijwc_ not modelled 8.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 50 c2kp6A_ not modelled 8.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 51 c2da4A_ not modelled 8.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 52 d1b8ia_ not modelled 7.9 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 53 d1gyxa_ not modelled 7.8 17 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 54 c2da1A_ not modelled 7.8 19 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 55 c1a31A_ not modelled 7.7 23 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 56 d6rxna_ not modelled 7.6 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 57 d1qcva_ not modelled 7.5 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 58 d1ztra1 not modelled 7.5 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 59 d1gt0c1 not modelled 7.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 60 c2djnA_ not modelled 7.3 25 PDB header:transcription Chain: A: PDB Molecule:homeobox protein dlx-5; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5 61 d2dsxa1 not modelled 7.3 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 62 d1b72a_ not modelled 7.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 63 d1vnda_ not modelled 7.2 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 64 d1zl8a1 not modelled 7.1 17 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 65 c2dmsA_ not modelled 7.1 25 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2 66 d2rdva_ not modelled 7.0 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 67 d1uhsa_ not modelled 7.0 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 68 d1x93a1 not modelled 7.0 40 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 69 c1x93B_ not modelled 7.0 40 PDB header:transcription Chain: B: PDB Molecule:hypothetical protein hp0222; PDBTitle: nmr structure of helicobacter pylori hp0222 70 d1h7va_ not modelled 7.0 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 71 d1brfa_ not modelled 6.8 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 72 c2hfpB_ not modelled 6.7 83 PDB header:transcription Chain: B: PDB Molecule:src peptide fragment; PDBTitle: crystal structure of ppar gamma with n-sulfonyl-2-indole2 carboxamide ligands 73 d1rb9a_ not modelled 6.7 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 74 c1fm6E_ not modelled 6.7 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 75 c1fm9E_ not modelled 6.7 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and gi262570 and co-activator peptides. 76 c1k74E_ not modelled 6.7 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.3 angstrom resolution crystal structure of the2 heterodimer of the human ppargamma and rxralpha ligand3 binding domains respectively bound with gw409544 and 9-cis4 retinoic acid and co-activator peptides. 77 c2ypnA_ not modelled 6.6 38 PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase 78 d1iu5a_ not modelled 6.6 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 79 c3kmgE_ not modelled 6.6 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator-1; PDBTitle: the x-ray crystal structure of ppar-gamma in complex with an indole2 derivative modulator, gsk538, and an src-1 peptide 80 c1fm6V_ not modelled 6.6 83 PDB header:transcription Chain: V: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 81 c1p8dD_ not modelled 6.6 83 PDB header:membrane protein/protein binding Chain: D: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol 82 d1iroa_ not modelled 6.6 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 83 c1p8dC_ not modelled 6.5 71 PDB header:membrane protein/protein binding Chain: C: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol 84 c1k7lF_ not modelled 6.5 71 PDB header:transcription Chain: F: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 85 c1k7lD_ not modelled 6.5 71 PDB header:transcription Chain: D: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 86 c1k7lH_ not modelled 6.5 71 PDB header:transcription Chain: H: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 87 c1k7lB_ not modelled 6.5 71 PDB header:transcription Chain: B: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 88 d1hdpa_ not modelled 6.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 89 c1s7eA_ not modelled 6.5 31 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 6; PDBTitle: solution structure of hnf-6 90 c1s24A_ not modelled 6.5 33 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 91 d1s24a_ not modelled 6.5 33 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 92 d4rxna_ not modelled 6.4 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 93 d2e1oa1 not modelled 6.3 38 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 94 c2lcgA_ not modelled 6.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein rmet_5065 from ralstonia2 metallidurans, northeast structural genomics consortium target crr115 95 c3eq1A_ not modelled 6.3 24 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 96 c2dmtA_ not modelled 6.3 31 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein barh-like 1; PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1 97 c2v3bB_ not modelled 6.3 33 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 98 d1dx8a_ not modelled 6.1 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 99 c3a01A_ not modelled 6.1 31 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeodomain-containing protein; PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0