Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	V	M	L	Q	S	L	N	N	I	R	T	L	R	A	M	A	R	E	F	S	I	D	V	L	E	E	M	L	E	K	F	R	V	V	T	K	E	R	R	E	E	E	E	Q	Q	Q	R	E	L	A	E	R	Q	E	K	I	S	T
Secondary structure
SS confidence
Disorder		?	?							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	L	E	L	M	K	A	D	G	I	N	P	E	E	L	L	G	N	S	S	A	A	A	P	R	A	G	K	K	R	Q	P	R	P	A	K	Y	K	F	T	D	V	N	G	E	T	K	T	W	T	G	Q	G	R	T	P	K	P	I	A
Secondary structure
SS confidence
Disorder									?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?									?						?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.
Sequence		Q	A	L	A	E	G	K	S	L	D	D	F	L	I
Secondary structure
SS confidence
Disorder						?		?	?				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nr7 chain A Region: 2 - 82 Aligned: 81 Modelled: 81 Confidence: 99.7% Identity: 54% PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83 Phyre2 PDB 1hnr chain A Region: 91 - 134 Aligned: 44 Modelled: 44 Confidence: 99.6% Identity: 70% Fold: H-NS histone-like proteins Superfamily: H-NS histone-like proteins Family: H-NS histone-like proteins Phyre2 PDB 2lev chain A Region: 91 - 134 Aligned: 42 Modelled: 44 Confidence: 99.3% Identity: 31% PDB header:transcription regulator/dna Chain: A: PDB Molecule:ler; PDBTitle: structure of the dna complex of the c-terminal domain of ler Phyre2 PDB 2l92 chain A Region: 92 - 134 Aligned: 34 Modelled: 43 Confidence: 98.7% Identity: 41% PDB header:dna binding protein Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns; PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f Phyre2 PDB 2jr1 chain A Region: 75 - 126 Aligned: 49 Modelled: 52 Confidence: 98.6% Identity: 24% PDB header:dna binding protein Chain: A: PDB Molecule:virulence regulator; PDBTitle: solution structure of the dna binding domain of a nucleoid-associated2 protein, h-ns, from the phytopathogen xylella fastidiosa. Phyre2 PDB 1lr1 chain A Region: 2 - 58 Aligned: 57 Modelled: 57 Confidence: 98.5% Identity: 58% Fold: H-NS histone-like proteins Superfamily: H-NS histone-like proteins Family: H-NS histone-like proteins Phyre2 PDB 1ov9 chain A Region: 3 - 47 Aligned: 45 Modelled: 45 Confidence: 98.4% Identity: 47% Fold: H-NS histone-like proteins Superfamily: H-NS histone-like proteins Family: H-NS histone-like proteins Phyre2 PDB 1ni8 chain A Region: 2 - 46 Aligned: 45 Modelled: 45 Confidence: 98.3% Identity: 64% Fold: H-NS histone-like proteins Superfamily: H-NS histone-like proteins Family: H-NS histone-like proteins Phyre2 PDB 1y7y chain A domain 1 Region: 1 - 76 Aligned: 66 Modelled: 76 Confidence: 54.8% Identity: 24% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: SinR domain-like Phyre2 PDB 1ayj chain A Region: 105 - 112 Aligned: 8 Modelled: 8 Confidence: 29.9% Identity: 38% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Scorpion toxin-like Family: Plant defensins Phyre2 PDB 3gbh chain C Region: 1 - 31 Aligned: 31 Modelled: 31 Confidence: 29.8% Identity: 10% PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution Phyre2 PDB 3ivp chain D Region: 1 - 85 Aligned: 75 Modelled: 85 Confidence: 27.2% Identity: 9% PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. Phyre2 PDB 1i9z chain A Region: 94 - 118 Aligned: 24 Modelled: 25 Confidence: 24.5% Identity: 29% Fold: DNase I-like Superfamily: DNase I-like Family: Inositol polyphosphate 5-phosphatase (IPP5) Phyre2 PDB 3bpj chain D Region: 14 - 41 Aligned: 28 Modelled: 28 Confidence: 21.8% Identity: 21% PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j; PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha Phyre2 PDB 1bk8 chain A Region: 105 - 111 Aligned: 7 Modelled: 7 Confidence: 21.1% Identity: 43% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Scorpion toxin-like Family: Plant defensins Phyre2 PDB 2eq9 chain C Region: 61 - 83 Aligned: 23 Modelled: 23 Confidence: 21.0% Identity: 26% PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb Phyre2 PDB 2cyu chain A domain 1 Region: 61 - 83 Aligned: 23 Modelled: 23 Confidence: 20.7% Identity: 9% Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Phyre2 PDB 2eq7 chain C Region: 61 - 83 Aligned: 23 Modelled: 23 Confidence: 20.5% Identity: 26% PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo Phyre2 PDB 1f5v chain A Region: 1 - 31 Aligned: 31 Modelled: 31 Confidence: 20.2% Identity: 19% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1o17 chain A domain 1 Region: 1 - 78 Aligned: 56 Modelled: 63 Confidence: 19.9% Identity: 20% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 1 c3nr7A_ 2 d1hnra_ 3 c2levA_ 4 c2l92A_ 5 c2jr1A_ 6 d1lr1a_ 7 d1ov9a_ 8 d1ni8a_ 9 d1y7ya1 10 d1ayja_ 11 c3gbhC_ 12 c3ivpD_ 13 d1i9za_ 14 c3bpjD_ 15 d1bk8a_ 16 c2eq9C_ 17 d2cyua1 18 c2eq7C_ 19 d1f5va_ 20 d1o17a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nr7A_ 99.7 54 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83 2 d1hnra_ 99.6 70 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 3 c2levA_ 99.3 31 PDB header:transcription regulator/dna Chain: A: PDB Molecule:ler; PDBTitle: structure of the dna complex of the c-terminal domain of ler 4 c2l92A_ 98.7 41 PDB header:dna binding protein Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns; PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f 5 c2jr1A_ 98.6 24 PDB header:dna binding protein Chain: A: PDB Molecule:virulence regulator; PDBTitle: solution structure of the dna binding domain of a nucleoid-associated2 protein, h-ns, from the phytopathogen xylella fastidiosa. 6 d1lr1a_ 98.5 58 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 7 d1ov9a_ 98.4 47 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 8 d1ni8a_ 98.3 64 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 9 d1y7ya1 54.8 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 10 d1ayja_ 29.9 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 11 c3gbhC_ 29.8 10 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution 12 c3ivpD_ 27.2 9 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 13 d1i9za_ 24.5 29 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 14 c3bpjD_ 21.8 21 PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j; PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha 15 d1bk8a_ 21.1 43 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 16 c2eq9C_ 21.0 26 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 17 d2cyua1 20.7 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 18 c2eq7C_ 20.5 26 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 19 d1f5va_ 20.2 19 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 20 d1o17a1 19.9 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 d1w4ha1 not modelled 19.1 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22 c3dv0I_ not modelled 18.8 9 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 23 d1zcha1 not modelled 18.8 26 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 24 c2eq8C_ not modelled 17.6 22 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 25 c1w3dA_ not modelled 17.3 9 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 26 d1w85i_ not modelled 17.1 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 27 c2cooA_ not modelled 17.1 17 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase 28 c3gagB_ not modelled 14.7 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution 29 c1zwvA_ not modelled 14.1 17 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 30 c1w4kA_ not modelled 13.8 22 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase e2; PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions 31 c3d6zA_ not modelled 13.6 20 PDB header:transcription regulator/dna Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator; PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine 32 d1brwa1 not modelled 13.4 11 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 33 d1ic8a2 not modelled 13.3 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain 34 c1yw5A_ not modelled 13.2 19 PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans 35 d1bala_ not modelled 12.9 9 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 36 c1o17A_ not modelled 12.7 20 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 37 d1iwga5 not modelled 12.0 6 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 38 d2ewca1 not modelled 11.6 4 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 39 c2kpjA_ not modelled 11.6 9 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 40 c2xswB_ not modelled 11.4 39 PDB header:hydrolase Chain: B: PDB Molecule:72 kda inositol polyphosphate 5-phosphatase; PDBTitle: crystal structure of human inpp5e 41 d2a6ca1 not modelled 10.8 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 42 c1g6uB_ not modelled 10.1 30 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 43 c2rpbA_ not modelled 9.7 33 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein 44 c2kpoA_ not modelled 9.6 36 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x2 fold protein; PDBTitle: solution nmr structure of de novo designed rossmann 2x2 fold protein,2 northeast structural genomics consortium target or16 45 d1chma1 not modelled 9.6 14 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 46 d1m5ya3 not modelled 9.6 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 47 d1k4ta3 not modelled 9.4 16 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 48 c3bs3A_ not modelled 9.4 5 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 49 c2jvdA_ not modelled 9.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: solution nmr structure of the folded n-terminal fragment of2 upf0291 protein ynzc from bacillus subtilis. northeast3 structural genomics target sr384-1-46 50 c2jo8B_ not modelled 9.3 21 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 51 d1sxjc1 not modelled 8.9 18 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 52 d1iwga6 not modelled 8.6 20 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 53 d2ofya1 not modelled 8.6 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 54 d1r8ea1 not modelled 8.5 20 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 55 d1juba_ not modelled 8.1 19 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 56 c2l5pA_ not modelled 8.1 23 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis 57 c2jeeA_ not modelled 8.1 17 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 58 c3hdlA_ not modelled 8.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:royal palm tree peroxidase; PDBTitle: crystal structure of highly glycosylated peroxidase from royal palm2 tree 59 d2ifaa1 not modelled 7.9 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 60 d2ay0a1 not modelled 7.8 38 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:PutA pre-N-terminal region-like 61 c3bhpA_ not modelled 7.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0291 protein ynzc; PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384 62 d2o38a1 not modelled 7.5 3 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 63 c2o38A_ not modelled 7.5 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 64 d1r3ha2 not modelled 7.4 19 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 65 d1kzyc1 not modelled 7.3 5 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 66 d1iqpa1 not modelled 7.2 18 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 67 c1k5gH_ not modelled 7.1 19 PDB header:signaling protein/signaling activator Chain: H: PDB Molecule:ran-specific gtpase-activating protein; PDBTitle: crystal structure of ran-gdp-alfx-ranbp1-rangap complex 68 d1k5db_ not modelled 7.1 19 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Ran-binding domain 69 d2r1jl1 not modelled 7.1 33 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 70 d1sxjb1 not modelled 7.0 9 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 71 d1je6a2 not modelled 6.8 14 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 72 c3ebwA_ not modelled 6.7 5 PDB header:allergen Chain: A: PDB Molecule:per a 4 allergen; PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches 73 c3ge6B_ not modelled 6.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution 74 c2xstA_ not modelled 6.7 5 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 75 c3clcC_ not modelled 6.6 15 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 76 c3b7hA_ not modelled 6.6 7 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 77 c3qocD_ not modelled 6.6 11 PDB header:hydrolase Chain: D: PDB Molecule:putative metallopeptidase; PDBTitle: crystal structure of n-terminal domain (creatinase/prolidase like2 domain) of putative metallopeptidase from corynebacterium diphtheriae 78 c3il0B_ not modelled 6.6 11 PDB header:hydrolase Chain: B: PDB Molecule:aminopeptidase p; xaa-pro aminopeptidase; PDBTitle: the crystal structure of the aminopeptidase p,xaa-pro aminopeptidase2 from streptococcus thermophilus 79 d1j1va_ not modelled 6.6 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 80 c2q9lA_ not modelled 6.6 20 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 81 d1z3eb1 not modelled 6.5 6 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 82 d1pina2 not modelled 6.5 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 83 c2k23A_ not modelled 6.4 14 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 84 c3rmrA_ not modelled 6.4 32 PDB header:protein binding Chain: A: PDB Molecule:avirulence protein; PDBTitle: crystal structure of hyaloperonospora arabidopsidis atr1 effector2 domain 85 c3bemA_ not modelled 6.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution 86 c3ocaB_ not modelled 6.4 19 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis 87 d1utxa_ not modelled 6.4 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 88 c2l9vA_ not modelled 6.3 16 PDB header:rna binding protein Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a; PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state 89 c3gtzA_ not modelled 6.3 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative translation initiation inhibitor; PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium 90 d1tlha_ not modelled 6.2 16 Fold:Anti-sigma factor AsiA Superfamily:Anti-sigma factor AsiA Family:Anti-sigma factor AsiA 91 d2bjca1 not modelled 6.2 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 92 c2h0uA_ not modelled 6.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori 93 c3i7tA_ not modelled 6.0 8 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 94 c3pvpA_ not modelled 5.8 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 95 c2wl8D_ not modelled 5.8 19 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 96 c2rbfB_ not modelled 5.8 38 PDB header:oxidoreductase/dna Chain: B: PDB Molecule:bifunctional protein puta; PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2) 97 d1r69a_ not modelled 5.7 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 98 d1v8ga1 not modelled 5.7 9 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 99 c2kwvA_ not modelled 5.7 29 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm1 of murine polymerase iota in complex with2 ubiquitin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0