Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	A	K	L	V	K	S	K	A	T	N	L	L	Y	T	R	N	D	V	S	D	S	E	K	K	A	T	V	E	L	L	N	R	Q	V	I	Q	F	I	D	L	S	L	I	T	K	Q	A	H	W	N	M	R	G	A	N	F	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	V	H	E	M	L	D	G	F	R	T	A	L	I	D	H	L	D	T	M	A	E	R	A	V	Q	L	G	G	V	A	L	G	T	T	Q	V	I	N	S	K	T	P	L	K	S	Y	P	L	D	I	H	N	V	Q	D	H	L	K	E
Secondary structure
SS confidence
Disorder																																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Sequence		L	A	D	R	Y	A	I	V	A	N	D	V	R	K	A	I	G	E	A	K	D	D	D	T	A	D	I	L	T	A	A	S	R	D	L	D	K	F	L	W	F	I	E	S	N	I	E
Secondary structure
SS confidence
Disorder																																														?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1dps chain A Region: 9 - 167 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 99% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2f7n chain A Region: 10 - 167 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 25% PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: structure of d. radiodurans dps-1 Phyre2 PDB 1tjo chain A Region: 2 - 167 Aligned: 166 Modelled: 166 Confidence: 100.0% Identity: 22% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 1vel chain A Region: 15 - 167 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 35% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 1o9r chain A Region: 12 - 167 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 55% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2z90 chain D Region: 12 - 167 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 28% PDB header:dna binding protein Chain: D: PDB Molecule:starvation-inducible dna-binding protein or fine PDBTitle: crystal structure of the second dps from mycobacterium2 smegmatis Phyre2 PDB 2yjk chain F Region: 18 - 167 Aligned: 149 Modelled: 150 Confidence: 100.0% Identity: 31% PDB header:metal-binding protein Chain: F: PDB Molecule:afp; PDBTitle: structure of dps from microbacterium arborescens in the2 high iron form Phyre2 PDB 2fjc chain A domain 1 Region: 22 - 167 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 22% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2vxx chain B Region: 10 - 167 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 18% PDB header:dna-binding protein Chain: B: PDB Molecule:starvation induced dna binding protein; PDBTitle: x-ray structure of dpsa from thermosynechococcus elongatus Phyre2 PDB 2yw6 chain A domain 1 Region: 29 - 167 Aligned: 139 Modelled: 139 Confidence: 100.0% Identity: 37% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 3kwo chain A Region: 29 - 167 Aligned: 139 Modelled: 139 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:putative bacterioferritin; PDBTitle: crystal structure of putative bacterioferritin from2 campylobacter jejuni Phyre2 PDB 2c6r chain A Region: 24 - 167 Aligned: 144 Modelled: 144 Confidence: 100.0% Identity: 24% PDB header:dna-binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: fe-soaked crystal structure of the dps92 from deinococcus2 radiodurans Phyre2 PDB 1ji4 chain A Region: 28 - 166 Aligned: 139 Modelled: 139 Confidence: 100.0% Identity: 24% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2xgw chain A Region: 27 - 167 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 26% PDB header:metal binding protein Chain: A: PDB Molecule:peroxide resistance protein; PDBTitle: zinc-bound crystal structure of streptococcus pyogenes dpr Phyre2 PDB 1n1q chain A Region: 21 - 167 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 28% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 3iq1 chain A Region: 17 - 167 Aligned: 150 Modelled: 151 Confidence: 100.0% Identity: 19% PDB header:metal transport Chain: A: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps protein from vibrio cholerae o1, a member of2 a broad superfamily of ferritin-like diiron-carboxylate proteins Phyre2 PDB 2wla chain A Region: 27 - 167 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:dps-like peroxide resistance protein; PDBTitle: streptococcus pyogenes dpr Phyre2 PDB 1umn chain A Region: 27 - 167 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 26% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2bk6 chain A domain 1 Region: 29 - 167 Aligned: 139 Modelled: 139 Confidence: 100.0% Identity: 25% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2d5k chain C Region: 26 - 166 Aligned: 140 Modelled: 141 Confidence: 100.0% Identity: 24% PDB header:metal binding protein Chain: C: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps from staphylococcus aureus Phyre2 1 d1dpsa_ 2 c2f7nA_ 3 d1tjoa_ 4 d1vela_ 5 d1o9ra_ 6 c2z90D_ 7 c2yjkF_ 8 d2fjca1 9 c2vxxB_ 10 d2yw6a1 11 c3kwoA_ 12 c2c6rA_ 13 d1ji4a_ 14 c2xgwA_ 15 d1n1qa_ 16 c3iq1A_ 17 c2wlaA_ 18 d1umna_ 19 d2bk6a1 20 c2d5kC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1dpsa_ 100.0 99 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 2 c2f7nA_ 100.0 25 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: structure of d. radiodurans dps-1 3 d1tjoa_ 100.0 22 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 4 d1vela_ 100.0 35 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 5 d1o9ra_ 100.0 55 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 6 c2z90D_ 100.0 28 PDB header:dna binding protein Chain: D: PDB Molecule:starvation-inducible dna-binding protein or fine PDBTitle: crystal structure of the second dps from mycobacterium2 smegmatis 7 c2yjkF_ 100.0 31 PDB header:metal-binding protein Chain: F: PDB Molecule:afp; PDBTitle: structure of dps from microbacterium arborescens in the2 high iron form 8 d2fjca1 100.0 22 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 9 c2vxxB_ 100.0 18 PDB header:dna-binding protein Chain: B: PDB Molecule:starvation induced dna binding protein; PDBTitle: x-ray structure of dpsa from thermosynechococcus elongatus 10 d2yw6a1 100.0 37 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 11 c3kwoA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:putative bacterioferritin; PDBTitle: crystal structure of putative bacterioferritin from2 campylobacter jejuni 12 c2c6rA_ 100.0 24 PDB header:dna-binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: fe-soaked crystal structure of the dps92 from deinococcus2 radiodurans 13 d1ji4a_ 100.0 24 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 14 c2xgwA_ 100.0 26 PDB header:metal binding protein Chain: A: PDB Molecule:peroxide resistance protein; PDBTitle: zinc-bound crystal structure of streptococcus pyogenes dpr 15 d1n1qa_ 100.0 28 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 16 c3iq1A_ 100.0 19 PDB header:metal transport Chain: A: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps protein from vibrio cholerae o1, a member of2 a broad superfamily of ferritin-like diiron-carboxylate proteins 17 c2wlaA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:dps-like peroxide resistance protein; PDBTitle: streptococcus pyogenes dpr 18 d1umna_ 100.0 26 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 19 d2bk6a1 100.0 25 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 20 c2d5kC_ 100.0 24 PDB header:metal binding protein Chain: C: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps from staphylococcus aureus 21 c2pybC_ not modelled 100.0 20 PDB header:metal transport Chain: C: PDB Molecule:neutrophil activating protein; PDBTitle: napa protein from borrelia burgdorferi 22 c2c41K_ not modelled 100.0 20 PDB header:iron-binding/oxidation protein Chain: K: PDB Molecule:dps family dna-binding stress response protein; PDBTitle: x-ray structure of dps from thermosynechococcus elongatus 23 c2chpC_ not modelled 100.0 21 PDB header:dna-binding protein Chain: C: PDB Molecule:metalloregulation dna-binding stress protein; PDBTitle: crystal structure of the dodecameric ferritin mrga from2 b.subtilis 168 24 d1ji5a_ not modelled 100.0 22 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 25 d1jiga_ not modelled 100.0 25 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 26 d1zs3a1 not modelled 100.0 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 27 d1zuja1 not modelled 100.0 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 28 c2clbP_ not modelled 99.9 13 PDB header:metal binding protein Chain: P: PDB Molecule:dps-like protein; PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly 29 c2vzbA_ not modelled 99.9 13 PDB header:metal transport Chain: A: PDB Molecule:putative bacterioferritin-related protein; PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis 30 d1nf4a_ not modelled 99.8 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 31 d2htna1 not modelled 99.8 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 32 c3gvyC_ not modelled 99.8 12 PDB header:metal binding protein Chain: C: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of bacterioferritin from r.sphaeroides 33 c2qqyA_ not modelled 99.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma b operon; PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames 34 c3fvbB_ not modelled 99.8 13 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of ferritin (bacterioferritin) from2 brucella melitensis 35 c3bknB_ not modelled 99.8 15 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin 36 c3r2rA_ not modelled 99.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:bacterioferritin; PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0) 37 d1jgca_ not modelled 99.8 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 38 d2fkza1 not modelled 99.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 39 d1vlga_ not modelled 99.4 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 40 d1s3qa1 not modelled 99.4 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 41 c3qz3A_ not modelled 99.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ferritin; PDBTitle: the crystal structure of ferritin from vibrio cholerae o1 biovar el2 tor str. n16961 42 c3e6sD_ not modelled 99.3 12 PDB header:oxidoreductase Chain: D: PDB Molecule:ferritin; PDBTitle: crystal structure of ferritin soaked with iron from pseudo-2 nitzschia multiseries 43 c2jd8C_ not modelled 99.3 9 PDB header:metal transport Chain: C: PDB Molecule:ferritin homolog; PDBTitle: crystal structure of the zn-soaked ferritin from the2 hyperthermophilic archaeal anaerobe pyrococcus furiosus 44 d1euma_ not modelled 99.3 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 45 c3bvkC_ not modelled 99.3 11 PDB header:oxidoreductase Chain: C: PDB Molecule:ferritin; PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin 46 d1krqa_ not modelled 99.3 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 47 c3qd8M_ not modelled 99.3 6 PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb 48 d1j30a_ not modelled 99.1 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 49 d1lkoa1 not modelled 99.1 7 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 50 d1yv1a1 not modelled 99.0 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 51 d1lb3a_ not modelled 99.0 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 52 d2za7a1 not modelled 99.0 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 53 d1yuza1 not modelled 99.0 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 54 c3oghB_ not modelled 99.0 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ycie; PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins 55 d1r03a_ not modelled 98.9 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 56 d1mfra_ not modelled 98.9 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 57 d2ceia1 not modelled 98.9 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 58 d1rcda_ not modelled 98.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 59 d2oh3a1 not modelled 98.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:AMB4284-like 60 d1nnqa1 not modelled 98.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 61 d1z6om1 not modelled 98.7 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 62 c1dvbA_ not modelled 98.7 7 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 63 c3a9qR_ not modelled 98.6 11 PDB header:oxidoreductase Chain: R: PDB Molecule: PDBTitle: crystal structure analysis of e173a variant of the soybean2 ferritin sfer4 64 c2hr5B_ not modelled 98.5 12 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 65 c1yuzB_ not modelled 98.3 10 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 66 d2fzfa1 not modelled 98.2 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 67 d1bg7a_ not modelled 98.0 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 68 c2ib0A_ not modelled 98.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical alanine rich protein; PDBTitle: crystal structure of a conserved hypothetical protein, rv2844, from2 mycobacterium tuberculosis 69 d2ib0a1 not modelled 98.0 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Rv2844-like 70 c3qhbA_ not modelled 97.8 12 PDB header:metal transport Chain: A: PDB Molecule:symerythrin; PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa 71 d1jkva_ not modelled 97.5 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 72 d1vjxa_ not modelled 97.2 7 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 73 d1z6oa1 not modelled 95.9 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 74 c3q4nA_ not modelled 93.5 13 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0754; PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661 75 c1u7mB_ not modelled 92.4 20 PDB header:de novo protein Chain: B: PDB Molecule:four-helix bundle model; PDBTitle: solution structure of a diiron protein model: due ferri(ii)2 turn mutant 76 c1lt1G_ not modelled 91.5 23 PDB header:de novo protein Chain: G: PDB Molecule:l13g-df1; PDBTitle: sliding helix induced change of coordination geometry in a2 model di-mn(ii) protein 77 c3hiuB_ not modelled 90.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of protein (xcc3681) from xanthomonas2 campestris pv. campestris str. atcc 33913 78 c2hz8A_ not modelled 84.1 11 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed diiron protein; PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein 79 d2gyqa1 not modelled 83.6 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:YciF-like 80 c3fseB_ not modelled 80.8 13 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 81 d2gs4a1 not modelled 58.6 6 Fold:Ferritin-like Superfamily:Ferritin-like Family:YciF-like 82 d2cwla1 not modelled 53.4 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 83 c2bnlE_ not modelled 49.2 35 PDB header:stress-response Chain: E: PDB Molecule:modulator protein rsbr; PDBTitle: the structure of the n-terminal domain of rsbr 84 c2x7lP_ not modelled 27.8 15 PDB header:immune system Chain: P: PDB Molecule:hiv rev; PDBTitle: implications of the hiv-1 rev dimer structure at 3.2a2 resolution for multimeric binding to the rev response3 element 85 c3lphD_ not modelled 26.3 15 PDB header:viral protein Chain: D: PDB Molecule:protein rev; PDBTitle: crystal structure of the hiv-1 rev dimer 86 d1t98a2 not modelled 22.6 17 Fold:STAT-like Superfamily:MukF C-terminal domain-like Family:MukF C-terminal domain-like 87 d2nr5a1 not modelled 22.4 28 Fold:Ferritin-like Superfamily:SO2669-like Family:SO2669-like 88 c2l18A_ not modelled 19.4 9 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state 89 d1rxqa_ not modelled 16.8 9 Fold:DinB/YfiT-like putative metalloenzymes Superfamily:DinB/YfiT-like putative metalloenzymes Family:YfiT-like putative metal-dependent hydrolases 90 c2qf9B_ not modelled 14.5 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative secreted protein; PDBTitle: crystal structure of putative secreted protein duf305 from2 streptomyces coelicolor 91 d2hh6a1 not modelled 14.3 11 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 92 d2o3la1 not modelled 13.3 8 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 93 c1c9lA_ not modelled 11.9 44 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:clathrin; PDBTitle: peptide-in-groove interactions link target proteins to the2 b-propeller of clathrin 94 d1otha1 not modelled 11.5 10 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 95 d1utca2 not modelled 11.3 44 Fold:7-bladed beta-propeller Superfamily:Clathrin heavy-chain terminal domain Family:Clathrin heavy-chain terminal domain 96 c2pt7G_ not modelled 10.7 11 PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) 97 c3ggzH_ not modelled 10.5 28 PDB header:protein transport, endocytosis Chain: H: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 98 c3ggzE_ not modelled 10.3 28 PDB header:protein transport, endocytosis Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 99 c3ggzF_ not modelled 10.3 28 PDB header:protein transport, endocytosis Chain: F: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0