Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	H	D	N	K	L	Q	V	E	A	I	K	R	G	T	V	I	D	H	I	P	A	Q	I	G	F	K	L	L	S	L	F	K	L	T	E	T	D	Q	R	I	T	I	G	L	N	L	P	S	G	E	M	G	R	K	D	L	I	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?				?	?	?																																					?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	E	N	T	F	L	S	E	D	Q	V	D	Q	L	A	L	Y	A	P	Q	A	T	V	N	R	I	D	N	Y	E	V	V	G	K	S	R	P	S	L	P	E	R	I	D	N	V	L	V	C	P	N	S	N	C	I	S	H	A	E	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Sequence		V	S	S	S	F	A	V	R	K	R	A	N	D	I	A	L	K	C	K	Y	C	E	K	E	F	S	H	N	V	V	L	A	N
Secondary structure
SS confidence
Disorder											?	?																?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2h3e chain B Region: 9 - 153 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: structure of wild-type e. coli aspartate transcarbamoylase in the2 presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution Phyre2 PDB 1pg5 chain B Region: 8 - 153 Aligned: 145 Modelled: 146 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius Phyre2 PDB 2yww chain A Region: 8 - 150 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 35% PDB header:metal binding protein Chain: A: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of aspartate carbamoyltransferase2 regulatory chain from methanocaldococcus jannaschii Phyre2 PDB 2be7 chain E Region: 14 - 151 Aligned: 128 Modelled: 138 Confidence: 100.0% Identity: 57% PDB header:transferase Chain: E: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unliganded (t-state) aspartate2 transcarbamoylase of the psychrophilic bacterium moritella profunda Phyre2 PDB 2fzc chain B domain 1 Region: 2 - 100 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Phyre2 PDB 2atc chain B domain 1 Region: 1 - 100 Aligned: 100 Modelled: 100 Confidence: 100.0% Identity: 88% Fold: Ferredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Phyre2 PDB 1pg5 chain B domain 1 Region: 8 - 100 Aligned: 92 Modelled: 93 Confidence: 100.0% Identity: 42% Fold: Ferredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Phyre2 PDB 2fzc chain B domain 2 Region: 101 - 153 Aligned: 53 Modelled: 53 Confidence: 99.8% Identity: 100% Fold: Rubredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Phyre2 PDB 2atc chain B domain 2 Region: 101 - 153 Aligned: 52 Modelled: 53 Confidence: 99.7% Identity: 90% Fold: Rubredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Phyre2 PDB 1pg5 chain B domain 2 Region: 101 - 153 Aligned: 52 Modelled: 53 Confidence: 99.7% Identity: 23% Fold: Rubredoxin-like Superfamily: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Phyre2 PDB 1xrz chain A Region: 136 - 143 Aligned: 8 Modelled: 8 Confidence: 51.4% Identity: 50% PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of a zinc finger with cyclohexanylalanine2 substituted for the central aromatic residue Phyre2 PDB 7znf chain A Region: 136 - 148 Aligned: 13 Modelled: 13 Confidence: 42.9% Identity: 46% PDB header:zinc finger dna binding domain Chain: A: PDB Molecule:zinc finger; PDBTitle: alternating zinc fingers in the human male associated2 protein zfy: 2d nmr structure of an even finger and3 implications for "jumping-linker" dna recognition Phyre2 PDB 7znf chain A Region: 136 - 148 Aligned: 13 Modelled: 13 Confidence: 42.9% Identity: 46% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1pvm chain A domain 3 Region: 106 - 114 Aligned: 9 Modelled: 9 Confidence: 41.1% Identity: 44% Fold: Rubredoxin-like Superfamily: Hypothetical protein Ta0289 C-terminal domain Family: Hypothetical protein Ta0289 C-terminal domain Phyre2 PDB 1dgs chain B Region: 77 - 114 Aligned: 38 Modelled: 38 Confidence: 39.2% Identity: 26% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis Phyre2 PDB 2elp chain A Region: 131 - 149 Aligned: 19 Modelled: 19 Confidence: 38.7% Identity: 37% PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 Phyre2 PDB 1vq0 chain A domain 2 Region: 132 - 148 Aligned: 17 Modelled: 17 Confidence: 38.3% Identity: 18% Fold: HSP33 redox switch-like Superfamily: HSP33 redox switch-like Family: HSP33 redox switch-like Phyre2 PDB 2l8e chain A Region: 130 - 144 Aligned: 15 Modelled: 15 Confidence: 37.6% Identity: 40% PDB header:dna binding protein Chain: A: PDB Molecule:polyhomeotic-like protein 1; PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1) Phyre2 PDB 1rik chain A Region: 135 - 149 Aligned: 15 Modelled: 15 Confidence: 37.4% Identity: 27% PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1) Phyre2 PDB 5znf chain A Region: 136 - 142 Aligned: 7 Modelled: 7 Confidence: 37.3% Identity: 57% PDB header:zinc finger dna binding domain Chain: A: PDB Molecule:zinc finger; PDBTitle: alternating zinc fingers in the human male associated2 protein zfy: 2d nmr structure of an even finger and3 implications for "jumping-linker" dna recognition Phyre2 1 c2h3eB_ 2 c1pg5B_ 3 c2ywwA_ 4 c2be7E_ 5 d2fzcb1 6 d2atcb1 7 d1pg5b1 8 d2fzcb2 9 d2atcb2 10 d1pg5b2 11 c1xrzA_ 12 c7znfA_ 13 d7znfa_ 14 d1pvma3 15 c1dgsB_ 16 c2elpA_ 17 d1vq0a2 18 c2l8eA_ 19 c1rikA_ 20 c5znfA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2h3eB_ 100.0 100 PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: structure of wild-type e. coli aspartate transcarbamoylase in the2 presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution 2 c1pg5B_ 100.0 34 PDB header:transferase Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius 3 c2ywwA_ 100.0 35 PDB header:metal binding protein Chain: A: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of aspartate carbamoyltransferase2 regulatory chain from methanocaldococcus jannaschii 4 c2be7E_ 100.0 57 PDB header:transferase Chain: E: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unliganded (t-state) aspartate2 transcarbamoylase of the psychrophilic bacterium moritella profunda 5 d2fzcb1 100.0 100 Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 6 d2atcb1 100.0 88 Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 7 d1pg5b1 100.0 42 Fold:Ferredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 8 d2fzcb2 99.8 100 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 9 d2atcb2 99.7 90 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 10 d1pg5b2 99.7 23 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11 c1xrzA_ 51.4 50 PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of a zinc finger with cyclohexanylalanine2 substituted for the central aromatic residue 12 c7znfA_ 42.9 46 PDB header:zinc finger dna binding domain Chain: A: PDB Molecule:zinc finger; PDBTitle: alternating zinc fingers in the human male associated2 protein zfy: 2d nmr structure of an even finger and3 implications for "jumping-linker" dna recognition 13 d7znfa_ 42.9 46 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 14 d1pvma3 41.1 44 Fold:Rubredoxin-like Superfamily:Hypothetical protein Ta0289 C-terminal domain Family:Hypothetical protein Ta0289 C-terminal domain 15 c1dgsB_ 39.2 26 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 16 c2elpA_ 38.7 37 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 17 d1vq0a2 38.3 18 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 18 c2l8eA_ 37.6 40 PDB header:dna binding protein Chain: A: PDB Molecule:polyhomeotic-like protein 1; PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1) 19 c1rikA_ 37.4 27 PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1) 20 c5znfA_ 37.3 57 PDB header:zinc finger dna binding domain Chain: A: PDB Molecule:zinc finger; PDBTitle: alternating zinc fingers in the human male associated2 protein zfy: 2d nmr structure of an even finger and3 implications for "jumping-linker" dna recognition 21 d1xjha_ not modelled 35.6 29 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 22 c2jvmA_ not modelled 35.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of rhodobacter sphaeroides protein2 rhos4_26430. northeast structural genomics consortium3 target rhr95 23 c1vzyA_ not modelled 34.9 12 PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of the bacillus subtilis hsp33 24 d1vzya2 not modelled 34.1 12 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 25 c3siqF_ not modelled 33.4 17 PDB header:ligase Chain: F: PDB Molecule:apoptosis 1 inhibitor; PDBTitle: crystal structure of autoinhibited diap1-bir1 domain 26 c2jrrA_ not modelled 32.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90 27 c1vq0A_ not modelled 32.1 17 PDB header:chaperone Chain: A: PDB Molecule:33 kda chaperonin; PDBTitle: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog)2 (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution 28 c1klsA_ not modelled 29.8 57 PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of the zfy-6t[y10l] zinc finger 29 c1klrA_ not modelled 29.6 57 PDB header:transcription Chain: A: PDB Molecule:zinc finger y-chromosomal protein; PDBTitle: nmr structure of the zfy-6t[y10f] zinc finger 30 d1klra_ not modelled 29.6 57 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 31 d1njqa_ not modelled 28.0 29 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Plant C2H2 finger (QALGGH zinc finger) 32 c2elvA_ not modelled 27.5 22 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 6th c2h2 zinc finger of human2 zinc finger protein 406 33 d2cota1 not modelled 27.0 42 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 34 d1a1ia2 not modelled 26.9 24 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 35 d1llmc2 not modelled 26.6 18 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 36 c2eltA_ not modelled 25.3 19 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 3rd c2h2 zinc finger of human2 zinc finger protein 406 37 d2ct1a2 not modelled 25.2 20 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 38 c1arfA_ not modelled 25.1 21 PDB header:transcription regulation Chain: A: PDB Molecule:yeast transcription factor adr1; PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding 39 c2jz8A_ not modelled 24.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55 40 d1ncsa_ not modelled 24.1 28 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 41 c1meyG_ not modelled 23.9 38 PDB header:transferase/dna Chain: G: PDB Molecule:consensus zinc finger; PDBTitle: crystal structure of a designed zinc finger protein bound2 to dna 42 c2eprA_ not modelled 22.8 22 PDB header:transcription Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing PDBTitle: solution structure of the secound zinc finger domain of2 zinc finger protein 278 43 c3t6pA_ not modelled 22.6 25 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2; PDBTitle: iap antagonist-induced conformational change in ciap1 promotes e32 ligase activation via dimerization 44 d1u85a1 not modelled 22.3 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 45 c2elqA_ not modelled 21.7 25 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 14th c2h2 zinc finger of human2 zinc finger protein 406 46 c2drpD_ not modelled 21.4 20 PDB header:transcription/dna Chain: D: PDB Molecule:protein (tramtrack dna-binding domain); PDBTitle: the crystal structure of a two zinc-finger peptide reveals2 an extension to the rules for zinc-finger/dna recognition 47 d1m4ma_ not modelled 21.2 22 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 48 d1tfqa_ not modelled 21.1 19 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 49 c2el5A_ not modelled 21.0 33 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 268; PDBTitle: solution structure of the 18th zf-c2h2 domain from human2 zinc finger protein 268 50 c3m0aD_ not modelled 20.5 19 PDB header:signaling protein Chain: D: PDB Molecule:baculoviral iap repeat-containing protein 3; PDBTitle: crystal structure of traf2:ciap2 complex 51 d1i3oe_ not modelled 20.3 10 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 52 d2raxa1 not modelled 20.1 19 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 53 d1xb0a_ not modelled 20.1 9 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 54 d1srka_ not modelled 20.0 18 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 55 d2dkta1 not modelled 20.0 23 Fold:CHY zinc finger-like Superfamily:CHY zinc finger-like Family:CHY zinc finger 56 d2vsla1 not modelled 19.7 12 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 57 d1a1ia3 not modelled 19.3 18 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 58 d1se0a_ not modelled 19.3 19 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 59 d1q4qa_ not modelled 19.0 13 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 60 d1m4ka2 not modelled 18.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 61 d2i3ha1 not modelled 18.8 14 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 62 d1dgsa1 not modelled 18.8 56 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 63 d1tf3a2 not modelled 18.4 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 64 d3d9ta1 not modelled 18.4 29 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 65 d2epsa1 not modelled 18.1 42 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 66 d1xb0b_ not modelled 18.1 14 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 67 d2epra1 not modelled 18.1 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 68 c1v9pB_ not modelled 17.9 24 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 69 d1x6ha2 not modelled 17.4 26 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 70 c2poiA_ not modelled 16.9 13 PDB header:signaling protein/apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4; PDBTitle: crystal structure of xiap bir1 domain (i222 form) 71 c2elsA_ not modelled 16.9 28 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 2nd c2h2 zinc finger of human2 zinc finger protein 406 72 d1g73d_ not modelled 16.8 19 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 73 d1jd5a_ not modelled 16.6 14 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 74 c1va3A_ not modelled 16.5 29 PDB header:transcription Chain: A: PDB Molecule:transcription factor sp1; PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 3) 75 d2vrda1 not modelled 16.5 27 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 76 d1oxna_ not modelled 16.4 14 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 77 d1x6ea2 not modelled 16.2 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 78 d1vd4a_ not modelled 16.1 14 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 79 c1rimA_ not modelled 16.0 27 PDB header:de novo protein Chain: A: PDB Molecule:e6apc2 peptide; PDBTitle: e6-binding zinc finger (e6apc2) 80 c2yu5A_ not modelled 15.7 31 PDB header:rna binding protein Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the zf-c2h2 domain (669-699aa) in2 zinc finger protein 473 81 c2eoxA_ not modelled 15.7 21 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 315-2 345) of human zinc finger protein 473 82 d1xf7a_ not modelled 15.7 45 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 83 c1xf7A_ not modelled 15.7 45 PDB header:transcription Chain: A: PDB Molecule:wilms' tumor protein; PDBTitle: high resolution nmr structure of the wilms' tumor2 suppressor protein (wt1) finger 3 84 d2qfaa1 not modelled 15.6 19 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 85 c2epcA_ not modelled 15.6 21 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 32; PDBTitle: solution structure of zinc finger domain 7 in zinc finger2 protein 32 86 d1nkra2 not modelled 15.6 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 87 c2eifA_ not modelled 15.3 13 PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii 88 d2drpa1 not modelled 15.3 20 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 89 c2epuA_ not modelled 15.1 33 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 32; PDBTitle: solution structure of the secound c2h2 type zinc finger2 domain of zinc finger protein 32 90 c1oy7C_ not modelled 14.9 14 PDB header:apoptosis/peptide Chain: C: PDB Molecule:baculoviral iap repeat-containing protein 7; PDBTitle: structure and function analysis of peptide antagonists of melanoma2 inhibitor of apoptosis (ml-iap) 91 c2en3A_ not modelled 14.6 25 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 95 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 796-2 828) of human zinc finger protein 95 homolog 92 c2vm5A_ not modelled 14.5 14 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1; PDBTitle: human bir2 domain of baculoviral inhibitor of apoptosis2 repeat-containing 1 (birc1) 93 d1ueba1 not modelled 14.2 10 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 94 c3m1cA_ not modelled 14.0 22 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein h; PDBTitle: crystal structure of the conserved herpesvirus fusion regulator2 complex gh-gl 95 d1ubdc3 not modelled 14.0 42 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 96 d1sp1a_ not modelled 13.9 29 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 97 c1sp1A_ not modelled 13.9 29 PDB header:zinc finger Chain: A: PDB Molecule:sp1f3; PDBTitle: nmr structure of a zinc finger domain from transcription2 factor sp1f3, minimized average structure 98 d2dl2a1 not modelled 13.2 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 99 c2en8A_ not modelled 13.1 20 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the c2h2 type zinc finger (region 171-2 203) of human zinc finger protein 224

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0