Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	H	R	R	S	T	V	K	G	S	L	S	F	A	N	P	T	V	R	A	W	L	F	Q	I	L	A	V	V	A	V	V	G	I	V	G	W	L	F	H	N	T	V	T	N	L	N	N	R	G	I	T	S	G	F	A	F	L	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	G	A	G	F	G	I	V	Q	H	L	I	D	Y	Q	Q	G	D	T	Y	G	R	V	F	I	V	G	L	L	N	T	L	L	V	S	A	L	C	I	V	F	A	S	V	L	G	F	F	I	G	L	A	R	L	S	D	N	W	L	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	K	L	S	T	I	Y	I	E	I	F	R	N	I	P	P	L	L	Q	I	F	F	W	Y	F	A	V	L	R	N	L	P	G	P	R	Q	A	V	S	A	F	D	L	A	F	L	S	N	R	G	L	Y	I	P	S	P	Q	L	G	D
Secondary structure
SS confidence
Disorder																																	?				?	?	?									?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	F	I	A	F	I	L	A	V	V	M	A	I	V	L	S	V	G	L	F	R	F	N	K	T	Y	Q	I	K	T	G	Q	L	R	R	T	W	P	I	A	A	V	L	I	I	G	L	P	L	L	A	Q	W	L	F	G	A	A	L	H
Secondary structure
SS confidence
Disorder																													?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		W	D	V	P	A	L	R	G	F	N	F	R	G	G	M	V	L	I	P	E	L	A	A	L	T	L	A	L	S	V	Y	T	S	A	F	I	A	E	I	I	R	A	G	I	Q	A	V	P	Y	G	Q	H	E	A	A	R	S	L	G	L
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		P	N	P	V	T	L	R	Q	V	I	I	P	Q	A	L	R	V	I	I	P	P	L	T	S	Q	Y	L	N	I	V	K	N	S	S	L	A	A	A	I	G	Y	P	D	M	V	S	L	F	A	G	T	V	L	N	Q	T	G	Q	A	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Sequence		E	T	I	A	M	T	M	S	V	Y	L	I	I	S	L	T	I	S	L	L	M	N	I	Y	N	R	R	I	A	I	V	E	R
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3dhw chain A domain 1 Region: 84 - 382 Aligned: 193 Modelled: 195 Confidence: 99.9% Identity: 27% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2onk chain C Region: 21 - 384 Aligned: 244 Modelled: 245 Confidence: 99.9% Identity: 14% PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda Phyre2 PDB 2onk chain C domain 1 Region: 21 - 384 Aligned: 244 Modelled: 245 Confidence: 99.9% Identity: 14% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2r6g chain F domain 2 Region: 69 - 380 Aligned: 226 Modelled: 227 Confidence: 99.8% Identity: 18% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3d31 chain C domain 1 Region: 26 - 382 Aligned: 242 Modelled: 243 Confidence: 99.8% Identity: 21% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3d31 chain D Region: 26 - 382 Aligned: 242 Modelled: 243 Confidence: 99.8% Identity: 21% PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans Phyre2 PDB 3fh6 chain F Region: 17 - 387 Aligned: 286 Modelled: 286 Confidence: 99.8% Identity: 14% PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Phyre2 PDB 2r6g chain F Region: 69 - 380 Aligned: 225 Modelled: 227 Confidence: 99.8% Identity: 16% PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter Phyre2 PDB 2r6g chain G domain 1 Region: 15 - 388 Aligned: 273 Modelled: 274 Confidence: 99.7% Identity: 17% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 1umq chain A Region: 278 - 309 Aligned: 32 Modelled: 32 Confidence: 67.6% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1umq chain A Region: 278 - 309 Aligned: 32 Modelled: 32 Confidence: 67.6% Identity: 22% PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity Phyre2 PDB 1ntc chain A Region: 278 - 309 Aligned: 32 Modelled: 32 Confidence: 64.7% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1fip chain A Region: 278 - 309 Aligned: 32 Modelled: 32 Confidence: 64.7% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1eto chain B Region: 278 - 309 Aligned: 32 Modelled: 32 Confidence: 63.2% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 3e7l chain D Region: 278 - 309 Aligned: 32 Modelled: 32 Confidence: 61.0% Identity: 16% PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain Phyre2 PDB 1etx chain A Region: 278 - 309 Aligned: 32 Modelled: 32 Confidence: 55.5% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1g2h chain A Region: 278 - 309 Aligned: 31 Modelled: 32 Confidence: 42.6% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 2cw1 chain A Region: 288 - 302 Aligned: 15 Modelled: 15 Confidence: 35.6% Identity: 47% PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein Phyre2 PDB 2auw chain B Region: 278 - 308 Aligned: 31 Modelled: 29 Confidence: 24.4% Identity: 16% PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 Phyre2 PDB 1ign chain A domain 2 Region: 2 - 25 Aligned: 20 Modelled: 24 Confidence: 18.5% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: DNA-binding domain of rap1 Phyre2 1 d3dhwa1 2 c2onkC_ 3 d2onkc1 4 d2r6gf2 5 d3d31c1 6 c3d31D_ 7 c3fh6F_ 8 c2r6gF_ 9 d2r6gg1 10 d1umqa_ 11 c1umqA_ 12 d1ntca_ 13 d1fipa_ 14 d1etob_ 15 c3e7lD_ 16 d1etxa_ 17 d1g2ha_ 18 c2cw1A_ 19 c2auwB_ 20 d1igna2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3dhwa1 99.9 27 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 2 c2onkC_ 99.9 14 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 3 d2onkc1 99.9 14 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 4 d2r6gf2 99.8 18 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 5 d3d31c1 99.8 21 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 6 c3d31D_ 99.8 21 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 7 c3fh6F_ 99.8 14 PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli 8 c2r6gF_ 99.8 16 PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter 9 d2r6gg1 99.7 17 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 10 d1umqa_ 67.6 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 11 c1umqA_ 67.6 22 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 12 d1ntca_ 64.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 13 d1fipa_ 64.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 14 d1etob_ 63.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 15 c3e7lD_ 61.0 16 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 16 d1etxa_ 55.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 17 d1g2ha_ 42.6 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 18 c2cw1A_ 35.6 47 PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein 19 c2auwB_ 24.4 16 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 20 d1igna2 18.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of rap1 21 c2h51B_ not modelled 18.3 22 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-1; PDBTitle: crystal structure of human caspase-1 (glu390->asp and arg286->lys) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk) 22 d2auwa1 not modelled 16.0 27 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 23 d3orca_ not modelled 15.6 29 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 24 d1puca_ not modelled 14.4 40 Fold:Cell cycle regulatory proteins Superfamily:Cell cycle regulatory proteins Family:Cell cycle regulatory proteins 25 c1qb3B_ not modelled 14.1 40 PDB header:cell cycle Chain: B: PDB Molecule:cyclin-dependent kinases regulatory subunit; PDBTitle: crystal structure of the cell cycle regulatory protein cks1 26 c2d7dB_ not modelled 13.4 21 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 27 d1a8ra_ not modelled 12.1 24 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 28 c1is7F_ not modelled 12.0 35 PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex 29 d1wpla_ not modelled 12.0 35 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 30 c3e8gB_ not modelled 11.6 3 PDB header:membrane protein Chain: B: PDB Molecule:potassium channel protein; PDBTitle: crystal structure of the the open nak channel-na+/ca2+ complex 31 d1wura1 not modelled 11.6 24 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 32 c1wm9D_ not modelled 11.6 24 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 33 d1cksa_ not modelled 11.1 33 Fold:Cell cycle regulatory proteins Superfamily:Cell cycle regulatory proteins Family:Cell cycle regulatory proteins 34 c2jwaA_ not modelled 11.0 25 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 35 d1qb3a_ not modelled 10.8 40 Fold:Cell cycle regulatory proteins Superfamily:Cell cycle regulatory proteins Family:Cell cycle regulatory proteins 36 c2vn2B_ not modelled 10.7 25 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 37 c2c1eB_ not modelled 9.6 35 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-3 subunit p12; PDBTitle: crystal structures of caspase-3 in complex with aza-peptide michael2 acceptor inhibitors. 38 d2astc1 not modelled 9.1 27 Fold:Cell cycle regulatory proteins Superfamily:Cell cycle regulatory proteins Family:Cell cycle regulatory proteins 39 d2axtz1 not modelled 9.1 25 Fold:Transmembrane helix hairpin Superfamily:PsbZ-like Family:PsbZ-like 40 d1w96a2 not modelled 7.2 4 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 41 d2j9ga2 not modelled 7.0 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 42 d1ulza2 not modelled 6.9 29 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 43 c2c2zB_ not modelled 6.8 31 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-8 p10 subunit; PDBTitle: crystal structure of caspase-8 in complex with aza-peptide michael2 acceptor inhibitor 44 c2v79B_ not modelled 6.8 17 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 45 d1jhfa1 not modelled 6.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 46 d3c07a2 not modelled 6.6 20 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 47 c3iz5C_ not modelled 6.6 53 PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3 (l3p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 48 d1d1la_ not modelled 6.5 31 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 49 c3sipB_ not modelled 6.4 43 PDB header:hydrolase/ligase/hydrolase Chain: B: PDB Molecule:caspase; PDBTitle: crystal structure of drice and diap1-bir1 complex 50 d1mzja2 not modelled 6.4 25 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 51 c2gutA_ not modelled 6.4 12 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 52 c2p22D_ not modelled 6.3 50 PDB header:transport protein Chain: D: PDB Molecule:hypothetical 12.0 kda protein in ade3-ser2 PDBTitle: structure of the yeast escrt-i heterotetramer core 53 d1zk8a2 not modelled 6.2 26 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 54 d1i3ja_ not modelled 6.2 19 Fold:DNA-binding domain of intron-encoded endonucleases Superfamily:DNA-binding domain of intron-encoded endonucleases Family:DNA-binding domain of intron-encoded endonucleases 55 d2cg4a1 not modelled 6.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 56 c3mkyP_ not modelled 6.1 7 PDB header:dna binding protein/dna Chain: P: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form 57 d1i1ga1 not modelled 6.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 58 d4croa_ not modelled 6.1 31 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 59 c2zihC_ not modelled 6.1 16 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 74; PDBTitle: crystal structure of yeast vps74 60 c2qljB_ not modelled 6.1 35 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:caspase-7; PDBTitle: crystal structure of caspase-7 with inhibitor ac-wehd-cho 61 c2ziiA_ not modelled 6.0 16 PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 74; PDBTitle: crystal structure of yeast vps74-n-term truncation variant 62 c2w7nA_ not modelled 5.9 33 PDB header:transcription/dna Chain: A: PDB Molecule:trfb transcriptional repressor protein; PDBTitle: crystal structure of kora bound to operator dna: insight2 into repressor cooperation in rp4 gene regulation 63 d2cyya1 not modelled 5.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 64 d2coba1 not modelled 5.9 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain 65 c3natB_ not modelled 5.8 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved protein of unknown function ef_19772 from enterococcus faecalis 66 c3mkzU_ not modelled 5.7 9 PDB header:dna-binding protein/dna Chain: U: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-272)-18mer complex, p21 form 67 c1mhmB_ not modelled 5.7 18 PDB header:lyase Chain: B: PDB Molecule:s-adenosylmethionine decarboxylase; PDBTitle: crystal structure of s-adenosylmethionine decarboxylase2 from potato 68 c2ijlB_ not modelled 5.6 15 PDB header:transcription Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor; PDBTitle: the structure of a putative mode from agrobacterium tumefaciens. 69 d2cfxa1 not modelled 5.6 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 70 d1bxya_ not modelled 5.4 35 Fold:Ribosomal protein L30p/L7e Superfamily:Ribosomal protein L30p/L7e Family:Ribosomal protein L30p/L7e 71 d2apob1 not modelled 5.4 15 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 72 c2rbfB_ not modelled 5.3 27 PDB header:oxidoreductase/dna Chain: B: PDB Molecule:bifunctional protein puta; PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2) 73 d1cy9a_ not modelled 5.2 29 Fold:Prokaryotic type I DNA topoisomerase Superfamily:Prokaryotic type I DNA topoisomerase Family:Prokaryotic type I DNA topoisomerase 74 d2ey4e1 not modelled 5.2 31 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0