Job Description P33666 Confidence 97.08% Date Wed Jan 25 15:20:50 GMT 2012 Rank 11 Aligned Residues 146 % Identity 18% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		1806	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	F	D	N	G	M	N	W	N	N	A	L	R	Y	D	V	H	N	L	D	S	S	R	S	I	A	F	G	N	T	N	K	T	A	D	T	D	V	K	Q	Q	Y	L	E	F	R	S	E	G	A	K	T	F	E	P	S	E	G	L	K	V	T	P	Y	A	G	V	K	L	R	H	T	L	E	G	G	Y	Q	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		M	P	K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	.	.	.	.	.	.	.	.	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	R
Template Known Secondary structure					S	S												T	T			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S													.	.	.	.	.	.	.	.	S	S	S												S	S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																					.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
		1886	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	A	G	D	F	N	L	N	M	N	S	G	S	E	T	A	V	D	S	I	V	G	L	K	L	D	Y	A	G	K	D	G	W	S	A	S	A	T	L	E	G	G	P	N	L	S	Y	A	K	S	Q	R	T	A	S	L	A	G	A	G	S	Q	H	F	N	V	D	D	G	Q	K	G	G	G	I	N	S	L	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	K	L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	.	.	.	.	.	.	.	.	.	.	.	P	V	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.															T	T		T	T	T													S	S	B						S	S	S						B					.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.												.	.	.
		1966	.	.	.	1970	.	.	.	.		.	.	.	.	.	1980	.	.				.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.
Predicted Secondary structure											.									.	.	.
Query SS confidence											.									.	.	.
Query Sequence		S	V	G	V	K	Y	S	S	K	.	E	S	S	L	N	L	D	A	.	.	.	Y	N	W	K	E	D	G	I	S	D	K	G	V	M	L	N	F	K	K	T	F
Query Conservation											.									.	.	.
Alig confidence											.									.	.	.
Template Conservation
Template Sequence		A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	N	A	S	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure										S	S	S		S	S	S											S	S	S	S													S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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