Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	I	L	L	F	L	A	A	L	A	S	F	T	V	H	A	Q	P	P	S	Q	T	V	E	Q	T	V	R	H	I	Y	Q	N	Y	K	S	D	A	T	A	P	Y	F	G	E	T	G	E	R	A	I	T	S	A	R	I	Q	Q
Secondary structure
SS confidence
Disorder		?	?										?	?	?	?	?	?	?	?	?	?	?	?	?															?	?	?	?	?	?	?	?	?	?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	L	T	L	N	D	N	L	T	L	P	G	N	I	G	W	L	D	Y	D	P	V	C	D	C	Q	D	F	G	D	L	V	L	E	S	V	A	I	T	Q	T	D	A	D	H	A	D	A	V	V	R	F	R	I	F	K	D	D	K	E
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?																				?	?	?		?	?	?	?	?	?	?		?											?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	T	T	Q	T	L	K	M	V	A	E	N	G	R	W	V	I	D	D	I	V	S	N	H	G	S	V	L	Q	A	V	N	S	E	N	E	K	T	L	A	A	L	A	S	L	Q	K	E	Q	P	E	A	F	V	A	E	L	F	E	H
Secondary structure
SS confidence
Disorder		?																						?	?	?	?	?							?	?											?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	A	D	Y	S	W	P	W	T	W	V	V	S	D	S	Y	R	Q	A	V	N	A	F	Y	K	T	T	F	K	T	A	N	N	P	D	E	D	M	Q	I	E	R	Q	F	I	Y	D	N	P	I	C	F	G	E	E	S	L	F	S	R
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	D	E	I	R	V	L	E	K	T	A	D	S	A	R	I	H	V	R	F	T	L	T	N	G	N	N	E	E	Q	E	L	V	L	Q	R	R	E	G	K	W	E	I	A	D	F	I	R	P	N	S	G	S	L	L	K	Q	I	E	A
Secondary structure
SS confidence
Disorder									?																													?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		K	T	A	A	R	L	K	Q
Secondary structure
SS confidence
Disorder							?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3kzt chain B Region: 29 - 140 Aligned: 103 Modelled: 112 Confidence: 98.3% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution Phyre2 PDB 3k7c chain C Region: 23 - 137 Aligned: 95 Modelled: 95 Confidence: 97.3% Identity: 15% PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution Phyre2 PDB 2qgu chain A Region: 95 - 159 Aligned: 65 Modelled: 65 Confidence: 96.3% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 Phyre2 PDB 3gwr chain A Region: 19 - 137 Aligned: 100 Modelled: 99 Confidence: 92.9% Identity: 17% PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution Phyre2 PDB 2i9w chain A Region: 18 - 136 Aligned: 96 Modelled: 96 Confidence: 92.8% Identity: 15% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution Phyre2 PDB 3b7c chain A domain 1 Region: 24 - 137 Aligned: 104 Modelled: 113 Confidence: 90.9% Identity: 19% Fold: Cystatin-like Superfamily: NTF2-like Family: SO0125-like Phyre2 PDB 3blz chain A domain 1 Region: 97 - 137 Aligned: 41 Modelled: 41 Confidence: 88.7% Identity: 20% Fold: Cystatin-like Superfamily: NTF2-like Family: Sbal0622-like Phyre2 PDB 2jq5 chain A Region: 15 - 139 Aligned: 102 Modelled: 102 Confidence: 88.0% Identity: 15% PDB header:structural genomics Chain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097 Phyre2 PDB 1vqq chain A domain 1 Region: 48 - 138 Aligned: 82 Modelled: 91 Confidence: 87.8% Identity: 12% Fold: Cystatin-like Superfamily: NTF2-like Family: Penicillin binding protein 2a (PBP2A), N-terminal domain Phyre2 PDB 3duk chain D Region: 82 - 137 Aligned: 54 Modelled: 56 Confidence: 87.0% Identity: 15% PDB header:unknown function Chain: D: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution Phyre2 PDB 2i9w chain A domain 1 Region: 22 - 136 Aligned: 92 Modelled: 92 Confidence: 85.9% Identity: 15% Fold: Cystatin-like Superfamily: NTF2-like Family: SEC-C associated NTF2-like domain Phyre2 PDB 3fka chain D Region: 102 - 137 Aligned: 35 Modelled: 36 Confidence: 79.8% Identity: 14% PDB header:unknown function Chain: D: PDB Molecule:uncharacterized ntf-2 like protein; PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution Phyre2 PDB 3eby chain A domain 1 Region: 93 - 137 Aligned: 45 Modelled: 45 Confidence: 74.3% Identity: 16% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 2rgq chain A domain 1 Region: 102 - 137 Aligned: 36 Modelled: 36 Confidence: 72.5% Identity: 14% Fold: Cystatin-like Superfamily: NTF2-like Family: Rv3472-like Phyre2 PDB 3ef8 chain A domain 1 Region: 93 - 137 Aligned: 45 Modelled: 45 Confidence: 72.3% Identity: 11% Fold: Cystatin-like Superfamily: NTF2-like Family: BaiE/LinA-like Phyre2 PDB 3a76 chain B Region: 93 - 137 Aligned: 45 Modelled: 45 Confidence: 71.6% Identity: 13% PDB header:lyase Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase; PDBTitle: the crystal structure of lina Phyre2 PDB 3e99 chain A domain 1 Region: 93 - 137 Aligned: 45 Modelled: 45 Confidence: 71.1% Identity: 9% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 2rfr chain A domain 1 Region: 102 - 137 Aligned: 36 Modelled: 36 Confidence: 69.7% Identity: 14% Fold: Cystatin-like Superfamily: NTF2-like Family: BaiE/LinA-like Phyre2 PDB 3cu3 chain A domain 1 Region: 240 - 299 Aligned: 60 Modelled: 60 Confidence: 67.0% Identity: 18% Fold: Cystatin-like Superfamily: NTF2-like Family: BaiE/LinA-like Phyre2 PDB 1idp chain A Region: 79 - 141 Aligned: 59 Modelled: 62 Confidence: 65.9% Identity: 19% Fold: Cystatin-like Superfamily: NTF2-like Family: Scytalone dehydratase Phyre2 1 c3kztB_ 2 c3k7cC_ 3 c2qguA_ 4 c3gwrA_ 5 c2i9wA_ 6 d3b7ca1 7 d3blza1 8 c2jq5A_ 9 d1vqqa1 10 c3dukD_ 11 d2i9wa1 12 c3fkaD_ 13 d3ebya1 14 d2rgqa1 15 d3ef8a1 16 c3a76B_ 17 d3e99a1 18 d2rfra1 19 d3cu3a1 20 d1idpa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3kztB_ 98.3 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 2 c3k7cC_ 97.3 15 PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution 3 c2qguA_ 96.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 4 c3gwrA_ 92.9 17 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution 5 c2i9wA_ 92.8 15 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution 6 d3b7ca1 90.9 19 Fold:Cystatin-like Superfamily:NTF2-like Family:SO0125-like 7 d3blza1 88.7 20 Fold:Cystatin-like Superfamily:NTF2-like Family:Sbal0622-like 8 c2jq5A_ 88.0 15 PDB header:structural genomics Chain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097 9 d1vqqa1 87.8 12 Fold:Cystatin-like Superfamily:NTF2-like Family:Penicillin binding protein 2a (PBP2A), N-terminal domain 10 c3dukD_ 87.0 15 PDB header:unknown function Chain: D: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution 11 d2i9wa1 85.9 15 Fold:Cystatin-like Superfamily:NTF2-like Family:SEC-C associated NTF2-like domain 12 c3fkaD_ 79.8 14 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized ntf-2 like protein; PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution 13 d3ebya1 74.3 16 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 14 d2rgqa1 72.5 14 Fold:Cystatin-like Superfamily:NTF2-like Family:Rv3472-like 15 d3ef8a1 72.3 11 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 16 c3a76B_ 71.6 13 PDB header:lyase Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase; PDBTitle: the crystal structure of lina 17 d3e99a1 71.1 9 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 18 d2rfra1 69.7 14 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 19 d3cu3a1 67.0 18 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 20 d1idpa_ 65.9 19 Fold:Cystatin-like Superfamily:NTF2-like Family:Scytalone dehydratase 21 d3b8la1 not modelled 64.3 14 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 22 d3stda_ not modelled 63.9 20 Fold:Cystatin-like Superfamily:NTF2-like Family:Scytalone dehydratase 23 d3cnxa1 not modelled 58.1 14 Fold:Cystatin-like Superfamily:NTF2-like Family:SAV4671-like 24 d2owpa1 not modelled 52.1 20 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 25 c2gbxF_ not modelled 45.5 7 PDB header:oxidoreductase Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl 26 d1gpca_ not modelled 41.1 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Phage ssDNA-binding proteins 27 c2jqvA_ not modelled 39.5 13 PDB header:structural genomics Chain: A: PDB Molecule:aig2 protein-like; PDBTitle: solution structure at3g28950.1 from arabidopsis thaliana 28 c3gzrA_ not modelled 39.4 20 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold; PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution 29 d2chca1 not modelled 36.2 13 Fold:Cystatin-like Superfamily:NTF2-like Family:Rv3472-like 30 c1mwuA_ not modelled 34.5 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution. 31 d1twfc2 not modelled 32.9 14 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 32 c2hx6A_ not modelled 32.8 43 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 33 c3f7sA_ not modelled 31.8 21 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution 34 c3fh1A_ not modelled 30.7 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (mll8193)2 from mesorhizobium loti at 1.60 a resolution 35 d3ejva1 not modelled 30.7 28 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 36 d1y74a1 not modelled 29.9 24 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 37 c1fuiB_ not modelled 29.4 25 PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli 38 d1zl8a1 not modelled 29.0 37 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 39 d2a1ka1 not modelled 27.3 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Phage ssDNA-binding proteins 40 d2f86b1 not modelled 23.0 24 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 41 c3h51A_ not modelled 22.6 15 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution 42 d2b1xb1 not modelled 21.1 9 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 43 d2rcda1 not modelled 19.4 25 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 44 d2bbya_ not modelled 18.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DNA-binding domain from rap30 45 c3ibzA_ not modelled 16.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative tellurium resistant like protein terd; PDBTitle: crystal structure of putative tellurium resistant like protein (terd)2 from streptomyces coelicolor a3(2) 46 c2jmkA_ not modelled 16.1 35 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein ta0956; PDBTitle: solution structure of ta0956 47 d2axti1 not modelled 16.0 22 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 48 c3bb9D_ not modelled 15.5 28 PDB header:unknown function Chain: D: PDB Molecule:putative orphan protein; PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution 49 d2bmob1 not modelled 15.5 11 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 50 d2ux0a1 not modelled 15.3 18 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 51 c3efhB_ not modelled 14.7 21 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1 52 c3ke7A_ not modelled 14.1 20 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution 53 d2r4ia1 not modelled 13.9 6 Fold:Cystatin-like Superfamily:NTF2-like Family:CHU142-like 54 d3ec9a1 not modelled 13.9 22 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 55 c3iu0A_ not modelled 13.6 35 PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: structural basis for zymogen activation and substrate binding of2 transglutaminase from streptomyces mobaraense 56 d1iu4a_ not modelled 13.6 35 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Microbial transglutaminase 57 d1dqaa1 not modelled 13.3 18 Fold:Ferredoxin-like Superfamily:NAD-binding domain of HMG-CoA reductase Family:NAD-binding domain of HMG-CoA reductase 58 c3kspA_ not modelled 13.1 9 PDB header:unknown function Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain; PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution 59 d2evra1 not modelled 12.4 14 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:Spr N-terminal domain-like 60 c1x4qA_ not modelled 12.4 23 PDB header:rna binding protein Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3; PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3) 61 c3hx8A_ not modelled 11.6 16 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase2 (np_103587.1) from mesorhizobium loti at 1.45 a resolution 62 d2ezwa1 not modelled 11.5 50 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 63 d3bb9a1 not modelled 10.4 22 Fold:Cystatin-like Superfamily:NTF2-like Family:SO0125-like 64 d1hkxa_ not modelled 10.3 9 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 65 c1bm4A_ not modelled 10.1 17 PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog 66 d1ulib_ not modelled 9.4 9 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 67 d1kh0a_ not modelled 9.4 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 68 c3robC_ not modelled 9.3 14 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776 69 c2htbB_ not modelled 9.3 29 PDB header:isomerase Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase; PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form 70 c3kkfA_ not modelled 9.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:putative antibiotic biosynthesis monooxygenase; PDBTitle: crystal structure of putative antibiotic biosynthesis2 monooxygenase (np_810307.1) from bacteriodes3 thetaiotaomicron vpi-5482 at 1.30 a resolution 71 d1v5ra1 not modelled 8.7 50 Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain 72 d2icwg1 not modelled 7.5 35 Fold:Superantigen MAM Superfamily:Superantigen MAM Family:Superantigen MAM 73 c3gzxB_ not modelled 7.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta; PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356 74 c2vkzH_ not modelled 6.7 14 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 75 d1cida1 not modelled 6.7 35 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 76 c3sjrB_ not modelled 6.6 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved unkown function protein cv_1783 from2 chromobacterium violaceum atcc 12472 77 d2cxaa1 not modelled 6.6 40 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:LFTR-like 78 c2cxaA_ not modelled 6.6 40 PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli 79 c3rh0A_ not modelled 6.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2 80 c1p81A_ not modelled 6.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase hpii; PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli 81 d2imja1 not modelled 6.3 53 Fold:Cystatin-like Superfamily:NTF2-like Family:PFL3262-like 82 c3dkzA_ not modelled 6.2 17 PDB header:hydrolase Chain: A: PDB Molecule:thioesterase superfamily protein; PDBTitle: crystal structure of the q7w9w5_borpa protein from2 bordetella parapertussis. northeast structural genomics3 consortium target bpr208c. 83 d1eyha_ not modelled 6.1 19 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:ENTH domain 84 c3soyA_ not modelled 6.1 17 PDB header:membrane protein Chain: A: PDB Molecule:ntf2-like superfamily protein; PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 85 d1u9ya2 not modelled 6.1 29 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 86 c3r8kB_ not modelled 6.1 26 PDB header:apoptosis Chain: B: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul protein (hexagonal form) 87 d1nekc_ not modelled 5.8 22 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 88 c3g9hA_ not modelled 5.8 32 PDB header:endocytosis Chain: A: PDB Molecule:suppressor of yeast profilin deletion; PDBTitle: crystal structure of the c-terminal mu homology domain of2 syp1 89 c2wtkB_ not modelled 5.7 17 PDB header:transferase/metal-binding protein Chain: B: PDB Molecule:ste20-related kinase adapter protein alpha; PDBTitle: structure of the heterotrimeric lkb1-stradalpha-mo25alpha2 complex 90 c3mjdA_ not modelled 5.6 24 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis. 91 d2fcla1 not modelled 5.5 24 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:TM1012-like 92 d1inza_ not modelled 5.5 19 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:ENTH domain 93 c2k85A_ not modelled 5.5 12 PDB header:protein binding Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: p190-a rhogap ff1 domain 94 c3qk9B_ not modelled 5.3 12 PDB header:protein transport Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3 95 d1zbma1 not modelled 5.2 8 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 96 d1q8ba_ not modelled 5.1 8 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Hypothetical protein YjcS 97 c2kklA_ not modelled 5.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 98 d1o7nb_ not modelled 5.1 11 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0