Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	P	G	V	A	V	C	F	S	S	L	F	I	R	L	V	C	M	A	F	L	T	S	S	D	K	A	L	W	H	L	A	L	P	M	I	F	S	N	I	T	V	P	L	L	G	L	V	D	T	A	V	I	G	H	L	D	S	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?									?				?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	Y	L	G	G	V	A	V	G	A	T	A	T	S	F	L	F	M	L	L	L	F	L	R	M	S	T	T	G	L	T	A	Q	A	Y	G	A	K	N	P	Q	A	L	A	R	T	L	V	Q	P	L	L	L	A	L	G	A	G	A	L
Secondary structure
SS confidence
Disorder																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	A	L	L	R	T	P	I	I	D	L	A	L	H	I	V	G	G	S	E	A	V	L	E	Q	A	R	R	F	L	E	I	R	W	L	S	A	P	A	S	L	A	N	L	V	L	L	G	W	L	L	G	V	Q	Y	A	R	A	P	V
Secondary structure
SS confidence
Disorder																																																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	L	L	V	V	G	N	I	L	N	I	V	L	D	V	W	L	V	M	G	L	H	M	N	V	Q	G	A	A	L	A	T	V	I	A	E	Y	A	T	L	L	I	G	L	L	M	V	R	K	I	L	K	L	R	G	I	S	G	E	M
Secondary structure
SS confidence
Disorder																																																				?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	K	T	A	W	R	G	N	F	R	R	L	L	A	L	N	R	D	I	M	L	R	S	L	L	L	Q	L	C	F	G	A	I	T	V	L	G	A	R	L	G	S	D	I	I	A	V	N	A	V	L	M	T	L	L	T	F	T	A	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	L	D	G	F	A	Y	A	V	E	A	H	S	G	Q	A	Y	G	A	R	D	G	S	Q	L	L	D	V	W	R	A	A	C	R	Q	S	G	I	V	A	L	L	F	S	V	V	Y	L	L	A	G	E	H	I	I	A	L	L	T	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	T	Q	I	Q	Q	L	A	D	R	Y	L	I	W	Q	V	I	L	P	V	V	G	V	W	C	Y	L	L	D	G	M	F	I	G	A	T	R	A	T	E	M	R	N	S	M	A	V	A	A	A	G	F	A	L	T	L	L	T	L	P
Secondary structure
SS confidence
Disorder																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Sequence		W	L	G	N	H	A	L	W	L	A	L	T	V	F	L	A	L	R	G	L	S	L	A	A	I	W	R	R	H	W	R	N	G	T	W	F	A	A	T
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mku chain A Region: 17 - 454 Aligned: 436 Modelled: 436 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Phyre2 PDB 2r6g chain F domain 2 Region: 99 - 341 Aligned: 235 Modelled: 243 Confidence: 14.4% Identity: 11% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 1v54 chain C Region: 9 - 120 Aligned: 109 Modelled: 109 Confidence: 13.9% Identity: 9% Fold: Cytochrome c oxidase subunit III-like Superfamily: Cytochrome c oxidase subunit III-like Family: Cytochrome c oxidase subunit III-like Phyre2 PDB 1u94 chain A domain 2 Region: 451 - 457 Aligned: 7 Modelled: 7 Confidence: 11.9% Identity: 29% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 PDB 1wrg chain A Region: 97 - 132 Aligned: 36 Modelled: 36 Confidence: 11.7% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain; PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum Phyre2 PDB 2yvx chain D Region: 20 - 163 Aligned: 139 Modelled: 144 Confidence: 10.8% Identity: 13% PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte Phyre2 PDB 1xp8 chain A domain 2 Region: 451 - 457 Aligned: 7 Modelled: 7 Confidence: 10.5% Identity: 14% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 PDB 1ube chain A domain 2 Region: 451 - 457 Aligned: 7 Modelled: 7 Confidence: 10.4% Identity: 43% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 PDB 2yvx chain A domain 3 Region: 24 - 163 Aligned: 135 Modelled: 140 Confidence: 10.4% Identity: 13% Fold: MgtE membrane domain-like Superfamily: MgtE membrane domain-like Family: MgtE membrane domain-like Phyre2 PDB 1lgh chain B Region: 97 - 132 Aligned: 36 Modelled: 36 Confidence: 10.3% Identity: 8% Fold: Light-harvesting complex subunits Superfamily: Light-harvesting complex subunits Family: Light-harvesting complex subunits Phyre2 PDB 1mo6 chain A domain 2 Region: 451 - 457 Aligned: 7 Modelled: 7 Confidence: 10.3% Identity: 43% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 PDB 2a5y chain B domain 1 Region: 1 - 5 Aligned: 5 Modelled: 5 Confidence: 10.1% Identity: 100% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: CED-4 C-terminal domain-like Phyre2 PDB 1sg7 chain A domain 1 Region: 447 - 459 Aligned: 13 Modelled: 13 Confidence: 10.0% Identity: 8% Fold: ChaB-like Superfamily: ChaB-like Family: ChaB-like Phyre2 PDB 1sg7 chain A Region: 447 - 459 Aligned: 13 Modelled: 13 Confidence: 10.0% Identity: 8% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cation transport regulator chab; PDBTitle: nmr solution structure of the putative cation transport2 regulator chab Phyre2 PDB 3ipd chain B Region: 318 - 357 Aligned: 40 Modelled: 40 Confidence: 9.5% Identity: 10% PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 Phyre2 PDB 1jo5 chain A Region: 101 - 132 Aligned: 32 Modelled: 32 Confidence: 9.0% Identity: 16% Fold: Light-harvesting complex subunits Superfamily: Light-harvesting complex subunits Family: Light-harvesting complex subunits Phyre2 PDB 2zqp chain Y Region: 93 - 331 Aligned: 233 Modelled: 239 Confidence: 8.8% Identity: 10% PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus Phyre2 PDB 2d5b chain A domain 1 Region: 94 - 141 Aligned: 48 Modelled: 48 Confidence: 8.7% Identity: 15% Fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Phyre2 PDB 2r6g chain G domain 1 Region: 425 - 453 Aligned: 29 Modelled: 29 Confidence: 7.7% Identity: 24% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 1m57 chain H Region: 427 - 455 Aligned: 29 Modelled: 29 Confidence: 7.4% Identity: 24% PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) Phyre2 1 c3mkuA_ 2 d2r6gf2 3 d1v54c_ 4 d1u94a2 5 c1wrgA_ 6 c2yvxD_ 7 d1xp8a2 8 d1ubea2 9 d2yvxa3 10 d1lghb_ 11 d1mo6a2 12 d2a5yb1 13 d1sg7a1 14 c1sg7A_ 15 c3ipdB_ 16 d1jo5a_ 17 c2zqpY_ 18 d2d5ba1 19 d2r6gg1 20 c1m57H_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mkuA_ 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 2 d2r6gf2 14.4 11 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 3 d1v54c_ 13.9 9 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 4 d1u94a2 11.9 29 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 5 c1wrgA_ 11.7 14 PDB header:membrane protein Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain; PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum 6 c2yvxD_ 10.8 13 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 7 d1xp8a2 10.5 14 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 8 d1ubea2 10.4 43 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 9 d2yvxa3 10.4 13 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 10 d1lghb_ 10.3 8 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 11 d1mo6a2 10.3 43 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 12 d2a5yb1 10.1 100 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CED-4 C-terminal domain-like 13 d1sg7a1 10.0 8 Fold:ChaB-like Superfamily:ChaB-like Family:ChaB-like 14 c1sg7A_ 10.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cation transport regulator chab; PDBTitle: nmr solution structure of the putative cation transport2 regulator chab 15 c3ipdB_ 9.5 10 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 16 d1jo5a_ 9.0 16 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 17 c2zqpY_ 8.8 10 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus 18 d2d5ba1 8.7 15 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 19 d2r6gg1 7.7 24 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 20 c1m57H_ 7.4 24 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 21 c1b9uA_ not modelled 7.3 10 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 22 c2k1aA_ not modelled 7.2 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 23 c2l35A_ not modelled 7.1 18 PDB header:protein binding Chain: A: PDB Molecule:dap12-nkg2c_tm; PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer 24 c1cdlG_ not modelled 7.0 17 PDB header:calcium-binding protein Chain: G: PDB Molecule:calcium/calmodulin-dependent protein kinase type PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex 25 c2o5gB_ not modelled 7.0 17 PDB header:metal binding protein Chain: B: PDB Molecule:smooth muscle myosin light chain kinase peptide; PDBTitle: calmodulin-smooth muscle light chain kinase peptide complex 26 c2ntxB_ not modelled 6.9 20 PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; 27 c1ygyA_ not modelled 6.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 28 c1z65A_ not modelled 6.9 63 PDB header:unknown function Chain: A: PDB Molecule:prion-like protein doppel; PDBTitle: mouse doppel 1-30 peptide 29 d2hqxa1 not modelled 6.8 30 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 30 c2hqxB_ not modelled 6.8 30 PDB header:transcription Chain: B: PDB Molecule:p100 co-activator tudor domain; PDBTitle: crystal structure of human p100 tudor domain conserved2 region 31 d3dtub2 not modelled 6.8 25 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 32 c3pnwX_ not modelled 6.8 13 PDB header:protein binding/immune system Chain: X: PDB Molecule:tudor domain-containing protein 3; PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab 33 c2eeyA_ not modelled 6.7 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis; PDBTitle: structure of gk0241 protein from geobacillus kaustophilus 34 c2eqkA_ not modelled 6.7 14 PDB header:transcription Chain: A: PDB Molecule:tudor domain-containing protein 4; PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4 35 d1nkzb_ not modelled 6.5 12 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 36 c2k9pA_ not modelled 6.4 18 PDB header:membrane protein Chain: A: PDB Molecule:pheromone alpha factor receptor; PDBTitle: structure of tm1_tm2 in lppg micelles 37 c2be6F_ not modelled 6.4 11 PDB header:membrane protein Chain: F: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit; PDBTitle: 2.0 a crystal structure of the cav1.2 iq domain-ca/cam complex 38 c1ql1A_ not modelled 6.4 24 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 39 d1u78a2 not modelled 6.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 40 d1mhna_ not modelled 6.2 18 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 41 d2hw4a1 not modelled 6.2 17 Fold:PHP14-like Superfamily:PHP14-like Family:Janus/Ocnus 42 c3gg9C_ not modelled 6.2 17 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase oxidoreductase protein; PDBTitle: crystal structure of putative d-3-phosphoglycerate dehydrogenase2 oxidoreductase from ralstonia solanacearum 43 c2hw4A_ not modelled 6.2 17 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 44 c2d9tA_ not modelled 6.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tudor domain-containing protein 3; PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse 45 c3egjA_ not modelled 6.1 25 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylglucosamine-6-phosphate deacetylase; PDBTitle: n-acetylglucosamine-6-phosphate deacetylase from vibrio cholerae. 46 d1rqga1 not modelled 6.0 13 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 47 d1uptb_ not modelled 6.0 19 Fold:GRIP domain Superfamily:GRIP domain Family:GRIP domain 48 d1u61a_ not modelled 5.9 19 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:RNase III catalytic domain-like 49 c1i97U_ not modelled 5.9 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of the 30s ribosomal subunit from thermus2 thermophilus in complex with tetracycline 50 c2kvvA_ not modelled 5.9 33 PDB header:hydrolase Chain: A: PDB Molecule:putative excisionase; PDBTitle: solution nmr of putative excisionase from klebsiella pneumoniae,2 northeast structural genomics consortium target target kpr49 51 c3ci9B_ not modelled 5.8 15 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 52 c2b2aA_ not modelled 5.8 8 PDB header:transferase Chain: A: PDB Molecule:telomerase reverse transcriptase; PDBTitle: crystal structure of the ten domain of the telomerase2 reverse transcriptase 53 c1qfqB_ not modelled 5.8 42 PDB header:transcription/rna Chain: B: PDB Molecule:36-mer n-terminal peptide of the n protein; PDBTitle: bacteriophage lambda n-protein-nutboxb-rna complex 54 c2fynH_ not modelled 5.8 19 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 55 c4a4fA_ not modelled 5.7 33 PDB header:rna binding protein Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30; PDBTitle: solution structure of spf30 tudor domain in complex with2 symmetrically dimethylated arginine 56 c1g5vA_ not modelled 5.7 18 PDB header:translation Chain: A: PDB Molecule:survival motor neuron protein 1; PDBTitle: solution structure of the tudor domain of the human smn2 protein 57 d1eysh2 not modelled 5.7 15 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 58 d1m56d_ not modelled 5.6 11 Fold:Single transmembrane helix Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV Family:Bacterial aa3 type cytochrome c oxidase subunit IV 59 c3mp7B_ not modelled 5.6 18 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase subunit sece; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 60 d1ik0a_ not modelled 5.6 21 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 61 c3s6n2_ not modelled 5.6 8 PDB header:splicing Chain: 2: PDB Molecule:survival of motor neuron protein-interacting protein 1; PDB Fragment:gemin2-binding domain; PDBTitle: crystal structure of the gemin2-binding domain of smn, gemin2 in2 complex with smd1/d2/f/e/g from human 62 c3txsC_ not modelled 5.6 21 PDB header:viral protein Chain: C: PDB Molecule:terminase dna packaging enzyme small subunit; PDBTitle: crystal structure of phage 44rr small terminase gp16 63 d3b60a2 not modelled 5.6 9 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 64 c2ow8v_ not modelled 5.5 33 PDB header:ribosome Chain: V: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. 65 c2dbqA_ not modelled 5.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glyoxylate reductase; PDBTitle: crystal structure of glyoxylate reductase (ph0597) from pyrococcus2 horikoshii ot3, complexed with nadp (i41) 66 d2d9ta1 not modelled 5.5 13 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 67 c3kf9B_ not modelled 5.4 33 PDB header:cell cycle/calcium-binding protein Chain: B: PDB Molecule:myosin light chain kinase 2, skeletal/cardiac muscle; PDBTitle: crystal structure of the sdcen/skmlck complex 68 c2hydB_ not modelled 5.4 8 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 69 c3bbo2_ not modelled 5.4 15 PDB header:ribosome Chain: 2: PDB Molecule:ribosomal protein l32; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 70 d1d8ja_ not modelled 5.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:The central core domain of TFIIE beta 71 c2yggA_ not modelled 5.4 17 PDB header:metal binding protein/transport protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: complex of cambr and cam 72 c2uxbU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein thx; PDBTitle: crystal structure of an extended trna anticodon stem loop2 in complex with its cognate mrna gggu in the context of3 the thermus thermophilus 30s subunit. 73 c2uuaU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 complexed with a valine-asl with cmo5u in position 343 bound to an mrna with a guc-codon in the a-site and4 paromomycin. 74 d2gu3a1 not modelled 5.3 11 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:PepSY-like 75 c2j02U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 3 of 4)3 this file contains the 30s subunit, mrna, a-, p- and4 e-site trnas and paromomycin for molecule ii. 76 c1hnwV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with tetracycline 77 c1j5eV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit 78 c2uxcU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein thx; PDBTitle: crystal structure of an extended trna anticodon stem loop2 in complex with its cognate mrna ucgu in the context of3 the thermus thermophilus 30s subunit. 79 c3ficU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas and ef-2 tu.gdp.kirromycin ternary complex, fitted to a 6.4 a cryo-em map.3 this file contains the 30s subunit and the ligands 80 c1xmqV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of t6a37-asllysuuu aaa-mrna bound to the decoding2 center 81 c2uucU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 complexed with a valine-asl with cmo5u in position 343 bound to an mrna with a gua-codon in the a-site and4 paromomycin. 82 c2vqfU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: modified uridines with c5-methylene substituents at the2 first position of the trna anticodon stabilize u-g wobble3 pairing during decoding 83 c1ibkV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with the antibiotic paromomycin 84 c1hr0V_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of initiation factor if1 bound to the 30s2 ribosomal subunit 85 c1hnzV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with hygromycin b 86 c1n32V_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 bound to codon and near-cognate transfer rna anticodon3 stem-loop mismatched at the first codon position at the a4 site with paromomycin 87 c2uubU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 complexed with a valine-asl with cmo5u in position 343 bound to an mrna with a guu-codon in the a-site and4 paromomycin. 88 c3zvoU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of the hybrid state of ribosome in complex with2 the guanosine triphosphatase release factor 3 89 c3oi4U_ not modelled 5.3 33 PDB header:ribosome/antibiotic Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome complexed with2 telithromycin. this file contains the 30s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes. 90 c3oi2U_ not modelled 5.3 33 PDB header:ribosome/antibiotic Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome complexed with2 telithromycin. this file contains the 30s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes. 91 c3mr8U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: recognition of the amber stop codon by release factor rf1. this entry2 3mr8 contains 30s ribosomal subunit. the 50s ribosomal subunit can be3 found in pdb entry 3ms1. molecule b in the same asymmetric unit is4 deposited as 3mrz (50s) and 3ms0 (30s). 92 c2j00U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 1 of 4).3 this file contains the 30s subunit, mrna, a-, p- and4 e-site trnas and paromomycin for molecule i. 93 c2y12U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: the crystal structure of ef-tu and g24a-trna-trp bound to a2 near-cognate codon on the 70s ribosome 94 c2vqeU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: modified uridines with c5-methylene substituents at the2 first position of the trna anticodon stabilize u-g wobble3 pairing during decoding 95 c3ms0U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: recognition of the amber stop codon by release factor rf1. this entry2 3ms0 contains 30s ribosomal subunit. the 50s ribosomal subunit can be3 found in pdb entry 3mrz. molecule a in the same asymmetric unit is4 deposited as 3mr8 (30s) and 3ms1 (50s). 96 c1ar1B_ not modelled 5.3 25 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 97 c1qleB_ not modelled 5.3 25 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 98 c3ogeU_ not modelled 5.3 33 PDB header:ribosome/antibiotic Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus ribosome complexed with2 chloramphenicol. this file contains the 30s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes. 99 c1gixX_ not modelled 5.3 33 PDB header:ribosome Chain: X: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this file,2 1gix, contains the 30s ribosome subunit, three trna, and mrna3 molecules. 50s ribosome subunit is in the file 1giy

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0