Email l.a.kelley@imperial.ac.uk Description P77169 Date Thu Jan 5 12:25:53 GMT 2012 Unique Job ID 7fe6a87cb8f4c0c4

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t0fa2 63.7 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:TnsA endonuclease, N-terminal domain 2 d1pk8a1 43.2 16 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 3 d1i7na1 41.3 20 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 4 c1i7nA_ 38.8 15 PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain 5 c2fqzC_ 27.8 16 PDB header:hydrolase/dna Chain: C: PDB Molecule:r.ecl18ki; PDBTitle: metal-depleted ecl18ki in complex with uncleaved dna 6 d2vo1a1 21.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 7 c3ctwB_ 20.2 41 PDB header:protein binding Chain: B: PDB Molecule:rcda; PDBTitle: crystal structure of rcda from caulobacter crescentus cb15 8 d1az3a_ 20.1 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 9 d1sx5a_ 18.5 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 10 d1cf7b_ 18.5 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 11 c2ougC_ 17.9 17 PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution 12 c3bm3A_ 16.2 42 PDB header:hydrolase/dna Chain: A: PDB Molecule:pspgi restriction endonuclease; PDBTitle: restriction endonuclease pspgi-substrate dna complex 13 d1c8da_ 15.8 14 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 14 c2hkeB_ 14.8 18 PDB header:lyase Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative; PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei 15 d1o7na1 14.1 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 16 d1qhda2 14.0 19 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 17 c1f1zB_ 13.9 17 PDB header:dna binding protein Chain: B: PDB Molecule:tnsa endonuclease; PDBTitle: tnsa, a catalytic component of the tn7 transposition system 18 d1x82a_ 13.8 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 19 d1s58a_ 13.1 14 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 20 d1m0da_ 12.2 45 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 21 d2i8da1 not modelled 12.0 9 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 22 d2vv5a2 not modelled 11.4 28 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 23 d1a21a2 not modelled 11.2 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 24 d2raqa1 not modelled 10.8 25 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 25 c1k3vA_ not modelled 10.7 11 PDB header:virus Chain: A: PDB Molecule:capsid protein vp2; PDBTitle: porcine parvovirus capsid 26 d1k3va_ not modelled 10.7 11 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 27 c1mtpB_ not modelled 10.1 22 PDB header:structural genomics Chain: B: PDB Molecule:serine proteinase inhibitor (serpin), chain b; PDBTitle: the x-ray crystal structure of a serpin from a thermophilic2 prokaryote 28 d1tf5a2 not modelled 10.0 13 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 29 d1uw4a_ not modelled 9.9 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Smg-4/UPF3 30 d1g8fa3 not modelled 9.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 31 d1gd8a_ not modelled 9.8 29 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 32 c3f59A_ not modelled 9.2 20 PDB header:structural protein Chain: A: PDB Molecule:ankyrin-1; PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin 33 d1na6a2 not modelled 9.2 38 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Type II restriction endonuclease catalytic domain 34 d1dfca2 not modelled 8.9 10 Fold:beta-Trefoil Superfamily:Actin-crosslinking proteins Family:Fascin 35 d2c1wa1 not modelled 8.8 19 Fold:EndoU-like Superfamily:EndoU-like Family:Eukaryotic EndoU ribonuclease 36 d3bpda1 not modelled 8.4 25 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 37 c3no0B_ not modelled 8.3 16 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: aquifex aeolicus type iia topoisomerase c-terminal domain 38 d1gxua_ not modelled 8.2 9 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 39 c3entB_ not modelled 8.2 26 PDB header:structural protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of nitrollin, a betagamma-crystallin from2 nitrosospira multiformis-in alternate space group (p65) 40 c3a0oB_ not modelled 8.0 24 PDB header:lyase Chain: B: PDB Molecule:oligo alginate lyase; PDBTitle: crystal structure of alginate lyase from agrobacterium tumefaciens c58 41 d1igwa_ not modelled 7.9 15 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 42 d1e1oa1 not modelled 7.7 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 43 d2zjrk1 not modelled 7.6 29 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 44 d1k9ca_ not modelled 7.6 36 Fold:P-domain of calnexin/calreticulin Superfamily:P-domain of calnexin/calreticulin Family:P-domain of calnexin/calreticulin 45 c2bjeA_ not modelled 7.6 20 PDB header:hydrolase Chain: A: PDB Molecule:acylphosphatase; PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group 46 c2q1fA_ not modelled 7.5 17 PDB header:lyase Chain: A: PDB Molecule:chondroitinase; PDBTitle: crystal structure of chondroitin sulfate lyase abc from bacteroides2 thetaiotaomicron wal2926 47 c2eceA_ not modelled 7.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:462aa long hypothetical selenium-binding protein; PDBTitle: x-ray structure of hypothetical selenium-binding protein2 from sulfolobus tokodaii, st0059 48 d2cqma1 not modelled 7.4 21 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 49 d2qamn1 not modelled 7.2 36 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 50 c1qhdA_ not modelled 7.2 19 PDB header:viral protein Chain: A: PDB Molecule:viral capsid vp6; PDBTitle: crystal structure of vp6, the major capsid protein of group a2 rotavirus 51 c3pisA_ not modelled 7.2 32 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 52 d1nz8a_ not modelled 7.0 29 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 53 d1sa3a_ not modelled 6.7 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease MspI 54 d1r3ha2 not modelled 6.5 24 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 55 d1krta_ not modelled 6.5 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 56 d1m1ha2 not modelled 6.5 6 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 57 d1v97a3 not modelled 6.5 15 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 58 d1c4ea_ not modelled 6.4 60 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Gurmarin-like Family:Gurmarin, a sweet taste-suppressing polypeptide 59 c2k06A_ not modelled 6.3 6 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg 60 c3bboP_ not modelled 6.3 7 PDB header:ribosome Chain: P: PDB Molecule:ribosomal protein l17; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 61 c3e5bB_ not modelled 6.3 18 PDB header:lyase Chain: B: PDB Molecule:isocitrate lyase; PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis 62 d1lp3a_ not modelled 6.0 11 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 63 d2coaa1 not modelled 6.0 6 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 64 c2z84A_ not modelled 5.9 17 PDB header:hydrolase Chain: A: PDB Molecule:ufm1-specific protease 1; PDBTitle: insights from crystal and solution structures of mouse ufsp1 65 d1f61a_ not modelled 5.9 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 66 c2r8rB_ not modelled 5.9 26 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 67 d2oc6a1 not modelled 5.8 17 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 68 d3elna1 not modelled 5.8 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 69 c3hzpA_ not modelled 5.8 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution 70 c2raxY_ not modelled 5.7 19 PDB header:cell cycle Chain: Y: PDB Molecule:borealin; PDBTitle: crystal structure of borealin (20-78) bound to survivin (1-120) 71 c3eubL_ not modelled 5.7 17 PDB header:oxidoreductase Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 72 c3c4mA_ not modelled 5.6 8 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 73 d1bbua1 not modelled 5.6 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 74 d1w2ia_ not modelled 5.5 26 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 75 d1mn3a_ not modelled 5.4 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 76 d1apsa_ not modelled 5.3 20 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 77 d1urra_ not modelled 5.3 33 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 78 c2x3dC_ not modelled 5.3 25 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 79 d1ei1a1 not modelled 5.3 14 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 80 d1jhna3 not modelled 5.0 36 Fold:P-domain of calnexin/calreticulin Superfamily:P-domain of calnexin/calreticulin Family:P-domain of calnexin/calreticulin 81 d3b9jc1 not modelled 5.0 17 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 82 d1z1ba1 not modelled 5.0 30 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:lambda integrase N-terminal domain