Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	S	L	Y	L	A	S	G	S	P	R	R	Q	E	L	L	A	Q	L	G	V	T	F	E	R	I	V	T	G	I	E	E	Q	R	Q	P	Q	E	S	A	Q	Q	Y	V	V	R	L	A	R	E	K	A	R	A	G	V	A	Q	T
Secondary structure
SS confidence
Disorder		?	?	?				?																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	K	D	L	P	V	L	G	A	D	T	I	V	I	L	N	G	E	V	L	E	K	P	R	D	A	E	H	A	A	Q	M	L	R	K	L	S	G	Q	T	H	Q	V	M	T	A	V	A	L	A	D	S	Q	H	I	L	D	C	L	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	T	D	V	T	F	R	T	L	T	D	E	D	I	A	G	Y	V	A	S	D	E	P	L	D	K	A	G	A	Y	G	I	Q	G	L	G	G	C	F	V	R	K	I	N	G	S	Y	H	A	V	V	G	L	P	L	V	E	T	Y	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Sequence		L	L	S	N	F	N	A	L	R	E	K	R	D	K	H	D	G
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ex2 chain A Region: 1 - 185 Aligned: 184 Modelled: 185 Confidence: 100.0% Identity: 48% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: Maf-like Phyre2 PDB 2amh chain A domain 1 Region: 1 - 185 Aligned: 185 Modelled: 185 Confidence: 100.0% Identity: 20% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: Maf-like Phyre2 PDB 2p5x chain B Region: 2 - 186 Aligned: 182 Modelled: 185 Confidence: 100.0% Identity: 38% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein Phyre2 PDB 1v7r chain A Region: 1 - 123 Aligned: 114 Modelled: 123 Confidence: 96.7% Identity: 11% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 2car chain A domain 1 Region: 1 - 123 Aligned: 114 Modelled: 123 Confidence: 95.5% Identity: 23% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1k7k chain A Region: 1 - 123 Aligned: 117 Modelled: 122 Confidence: 95.1% Identity: 17% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1b78 chain A Region: 3 - 123 Aligned: 112 Modelled: 121 Confidence: 92.5% Identity: 19% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 3tqu chain D Region: 1 - 123 Aligned: 118 Modelled: 123 Confidence: 90.0% Identity: 22% PDB header:hydrolase Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase; PDBTitle: structure of a ham1 protein from coxiella burnetii Phyre2 PDB 1vp2 chain A Region: 3 - 123 Aligned: 116 Modelled: 121 Confidence: 89.6% Identity: 15% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1pda chain A domain 1 Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 63.7% Identity: 25% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2ypn chain A Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 62.4% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase Phyre2 PDB 3eq1 chain A Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 61.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution Phyre2 PDB 2db5 chain A Region: 69 - 105 Aligned: 37 Modelled: 37 Confidence: 40.3% Identity: 19% PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the first pdz domain of inad-like2 protein Phyre2 PDB 2o2t chain B Region: 69 - 105 Aligned: 37 Modelled: 37 Confidence: 38.4% Identity: 24% PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 1st pdz domain of mpdz Phyre2 PDB 2e7k chain A Region: 69 - 104 Aligned: 34 Modelled: 36 Confidence: 32.4% Identity: 26% PDB header:membrane protein Chain: A: PDB Molecule:maguk p55 subfamily member 2; PDBTitle: solution structure of the pdz domain from human maguk p552 subfamily member 2 Phyre2 PDB 1x3l chain A Region: 4 - 106 Aligned: 99 Modelled: 100 Confidence: 31.2% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph0495; PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3 Phyre2 PDB 3egg chain C Region: 69 - 105 Aligned: 36 Modelled: 37 Confidence: 29.8% Identity: 25% PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin Phyre2 PDB 3jr2 chain D Region: 4 - 96 Aligned: 91 Modelled: 93 Confidence: 29.2% Identity: 11% PDB header:biosynthetic protein Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961 Phyre2 PDB 3a11 chain D Region: 4 - 90 Aligned: 80 Modelled: 87 Confidence: 28.8% Identity: 25% PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 Phyre2 PDB 1t5o chain A Region: 17 - 90 Aligned: 69 Modelled: 74 Confidence: 23.0% Identity: 19% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: IF2B-like Phyre2 1 d1ex2a_ 2 d2amha1 3 c2p5xB_ 4 d1v7ra_ 5 d2cara1 6 d1k7ka_ 7 d1b78a_ 8 c3tquD_ 9 d1vp2a_ 10 d1pdaa1 11 c2ypnA_ 12 c3eq1A_ 13 c2db5A_ 14 c2o2tB_ 15 c2e7kA_ 16 c1x3lA_ 17 c3eggC_ 18 c3jr2D_ 19 c3a11D_ 20 d1t5oa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ex2a_ 100.0 48 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 2 d2amha1 100.0 20 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 3 c2p5xB_ 100.0 38 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein 4 d1v7ra_ 96.7 11 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 5 d2cara1 95.5 23 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 6 d1k7ka_ 95.1 17 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 7 d1b78a_ 92.5 19 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 8 c3tquD_ 90.0 22 PDB header:hydrolase Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase; PDBTitle: structure of a ham1 protein from coxiella burnetii 9 d1vp2a_ 89.6 15 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 10 d1pdaa1 63.7 25 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 11 c2ypnA_ 62.4 25 PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase 12 c3eq1A_ 61.0 21 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 13 c2db5A_ 40.3 19 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the first pdz domain of inad-like2 protein 14 c2o2tB_ 38.4 24 PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 1st pdz domain of mpdz 15 c2e7kA_ 32.4 26 PDB header:membrane protein Chain: A: PDB Molecule:maguk p55 subfamily member 2; PDBTitle: solution structure of the pdz domain from human maguk p552 subfamily member 2 16 c1x3lA_ 31.2 22 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph0495; PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3 17 c3eggC_ 29.8 25 PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin 18 c3jr2D_ 29.2 11 PDB header:biosynthetic protein Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961 19 c3a11D_ 28.8 25 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 20 d1t5oa_ 23.0 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 21 d1ydua1 not modelled 21.8 20 Fold:At5g01610-like Superfamily:At5g01610-like Family:At5g01610-like 22 d1gh9a_ not modelled 19.3 23 Fold:Rubredoxin-like Superfamily:Hypothetical protein MTH1184 Family:Hypothetical protein MTH1184 23 d1wh1a_ not modelled 18.8 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 24 d1y0ua_ not modelled 18.4 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 25 d1v6ba_ not modelled 17.9 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 26 d1a9xa4 not modelled 17.4 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 27 d1ujva_ not modelled 17.2 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 28 c1tuoA_ not modelled 17.2 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative phosphomannomutase; PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8 29 d2eyqa2 not modelled 15.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 30 c2x0kB_ not modelled 14.7 18 PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes 31 d1i16a_ not modelled 14.5 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Interleukin 16 32 c3hrdC_ not modelled 13.1 15 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 33 d1gpua2 not modelled 12.1 16 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 34 d1vaea_ not modelled 12.1 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 35 d1e94a_ not modelled 12.0 15 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 36 d1sknp_ not modelled 11.9 23 Fold:A DNA-binding domain in eukaryotic transcription factors Superfamily:A DNA-binding domain in eukaryotic transcription factors Family:A DNA-binding domain in eukaryotic transcription factors 37 d1jgta2 not modelled 11.7 32 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 38 d1ujda_ not modelled 11.7 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 39 c2o7pA_ not modelled 11.6 14 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain 40 d1nd9a_ not modelled 11.4 7 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:N-terminal subdomain of bacterial translation initiation factor IF2 41 d1t1va_ not modelled 10.6 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like) 42 d1vb5a_ not modelled 10.4 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 43 c3diwB_ not modelled 10.2 23 PDB header:signaling protein/cell adhesion Chain: B: PDB Molecule:tax1-binding protein 3; PDBTitle: c-terminal beta-catenin bound tip-1 structure 44 c1u37A_ not modelled 9.8 19 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 45 c1u38A_ not modelled 9.8 19 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 46 d1rp5a2 not modelled 9.8 11 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 47 c2edpA_ not modelled 9.7 18 PDB header:structural protein Chain: A: PDB Molecule:shroom family member 4; PDBTitle: solution structure of the pdz domain from human shroom2 family member 4 48 d1kwma2 not modelled 9.7 10 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 49 d1x4pa1 not modelled 9.6 28 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 50 d1u5wa1 not modelled 9.6 10 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 51 d1id3b_ not modelled 9.6 12 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 52 c2ehrA_ not modelled 9.5 14 PDB header:structural protein Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the sixth pdz domain of human inad-2 like protein 53 c1m1zB_ not modelled 9.5 43 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme 54 d1f2ea2 not modelled 9.3 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 55 c3b76A_ not modelled 9.3 17 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase lnx; PDBTitle: crystal structure of the third pdz domain of human ligand-of-numb2 protein-x (lnx1) in complex with the c-terminal peptide from the3 coxsackievirus and adenovirus receptor 56 c3cyyA_ not modelled 9.3 22 PDB header:peptide binding protein Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: the crystal structure of zo-1 pdz2 in complex with the cx43 peptide 57 c2ktaA_ not modelled 9.1 17 PDB header:hydrolase Chain: A: PDB Molecule:putative helicase; PDBTitle: solution nmr structure of a domain of protein a6ky75 from bacteroides2 vulgatus, northeast structural genomics target bvr106a 58 d1ayea2 not modelled 9.1 10 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 59 d2boaa2 not modelled 9.1 10 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 60 d1p5dx2 not modelled 9.1 15 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 61 c1q5rD_ not modelled 8.8 20 PDB header:hydrolase Chain: D: PDB Molecule:proteasome alpha-type subunit 1; PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides 62 d1v8aa_ not modelled 8.8 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 63 d2cupa1 not modelled 8.7 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 64 c2kz5A_ not modelled 8.7 27 PDB header:transcription Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit; PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b 65 c2yt7A_ not modelled 8.7 19 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 66 d2h3la1 not modelled 8.7 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 67 c2dluA_ not modelled 8.7 23 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the second pdz domain of human inad-2 like protein 68 c2cveA_ not modelled 8.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 69 d2z3ba1 not modelled 8.5 23 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 70 d1x63a1 not modelled 8.5 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 71 c3qglD_ not modelled 8.4 18 PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3 72 c2krgA_ not modelled 8.3 23 PDB header:signaling protein Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1; PDBTitle: solution structure of human sodium/ hydrogen exchange2 regulatory factor 1(150-358) 73 d1v5qa_ not modelled 8.3 29 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 74 c1v5qA_ not modelled 8.3 29 PDB header:protein binding Chain: A: PDB Molecule:glutamate receptor interacting protein 1a-l PDBTitle: solution structure of the pdz domain from mouse glutamate2 receptor interacting protein 1a-l (grip1) homolog 75 d1x5ra1 not modelled 8.2 28 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 76 d1pyta_ not modelled 8.2 10 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 77 d1k25a2 not modelled 8.1 5 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 78 d1g3ka_ not modelled 8.1 23 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 79 d1b65a_ not modelled 8.1 14 Fold:DmpA/ArgJ-like Superfamily:DmpA/ArgJ-like Family:DmpA-like 80 c3dzvB_ not modelled 8.1 8 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 81 d1q7xa_ not modelled 8.1 29 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 82 d1pyya2 not modelled 8.0 16 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 83 d1itza2 not modelled 8.0 16 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 84 c2du4B_ not modelled 8.0 21 PDB header:ligase/rna Chain: B: PDB Molecule:o-phosphoseryl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys 85 d1obxa_ not modelled 7.9 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 86 c1obxA_ not modelled 7.9 14 PDB header:cell adhesion Chain: A: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the complex of pdz2 of syntenin with2 an interleukin 5 receptor alpha peptide. 87 c1obyB_ not modelled 7.9 14 PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the complex of pdz2 of syntenin with2 a syndecan-4 peptide. 88 d1nsaa2 not modelled 7.9 15 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 89 c3lyvF_ not modelled 7.8 40 PDB header:chaperone Chain: F: PDB Molecule:ribosome-associated factor y; PDBTitle: crystal structure of a domain of ribosome-associated factor y from2 streptococcus pyogenes serotype m6. northeast structural genomics3 consortium target id dr64a 90 c2ejyA_ not modelled 7.7 14 PDB header:membrane protein Chain: A: PDB Molecule:55 kda erythrocyte membrane protein; PDBTitle: solution structure of the p55 pdz t85c domain complexed2 with the glycophorin c f127c peptide 91 d1m5za_ not modelled 7.7 11 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 92 d1pcaa1 not modelled 7.7 10 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 93 c3gkxB_ not modelled 7.7 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 94 c2iwqA_ not modelled 7.7 26 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 7th pdz domain of multiple pdz domain protein mpdz 95 d1um7a_ not modelled 7.7 32 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 96 d1ueqa_ not modelled 7.6 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 97 d1mfga_ not modelled 7.6 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 98 d2a0ua1 not modelled 7.6 27 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 99 d2dlda2 not modelled 7.5 8 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0