Email l.a.kelley@imperial.ac.uk Description P45581 Date Thu Jan 5 12:03:27 GMT 2012 Unique Job ID 7e076a52e8988fd8

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3a1yF_ 50.6 37 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex 2 c3trkA_ 46.5 24 PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease 3 d1m6ya1 41.3 18 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 4 d1sgla_ 40.3 11 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 5 d1iooa_ 39.4 7 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 6 d1or4a_ 36.5 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 7 d1bola_ 33.6 7 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 8 c2jeuA_ 27.4 27 PDB header:transcription Chain: A: PDB Molecule:regulatory protein e2; PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction 9 d1wg8a1 26.7 18 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 10 c3d3zA_ 25.7 15 PDB header:hydrolase Chain: A: PDB Molecule:actibind; PDBTitle: crystal structure of actibind a t2 rnase 11 d1k32a4 24.5 38 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Tail specific protease, catalytic domain 12 c2w1oA_ 21.4 11 PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 13 d1ev0a_ 20.6 19 Fold:Cell division protein MinE topological specificity domain Superfamily:Cell division protein MinE topological specificity domain Family:Cell division protein MinE topological specificity domain 14 c2q0oC_ 20.4 38 PDB header:transcription Chain: C: PDB Molecule:probable transcriptional repressor tram; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing 15 c3iz5w_ 19.9 22 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 16 c2rchA_ 19.0 26 PDB header:lyase Chain: A: PDB Molecule:cytochrome p450 74a; PDBTitle: crystal structure of arabidopsis thaliana allene oxide synthase (aos,2 cytochrome p450 74a, cyp74a) complexed with 13(s)-hod at 1.85 a3 resolution 17 c3izcw_ 17.8 22 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 18 d1r6na_ 17.5 18 Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain 19 d1dixa_ 17.4 11 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 20 c2kxoA_ 17.1 19 PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae 21 c2w31A_ not modelled 16.7 15 PDB header:oxygen transport Chain: A: PDB Molecule:globin; PDBTitle: globin domain of geobacter sulfurreducens globin-coupled2 sensor 22 d1jy5a_ not modelled 16.2 14 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 23 c1n6dE_ not modelled 15.5 38 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 24 c1k32E_ not modelled 15.5 38 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 25 c1tueG_ not modelled 15.4 15 PDB header:replication Chain: G: PDB Molecule:regulatory protein e2; PDBTitle: the x-ray structure of the papillomavirus helicase in2 complex with its molecular matchmaker e2 26 d1tueb_ not modelled 15.3 15 Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain 27 d2nnua1 not modelled 15.0 15 Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain 28 d1iyba_ not modelled 14.4 14 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 29 c1vd3A_ not modelled 12.3 15 PDB header:hydrolase Chain: A: PDB Molecule:rnase ngr3; PDBTitle: ribonuclease nt in complex with 2'-ump 30 d1faoa_ not modelled 11.8 15 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 31 c1faoA_ not modelled 11.8 15 PDB header:signaling protein Chain: A: PDB Molecule:dual adaptor of phosphotyrosine and 3- PDBTitle: structure of the pleckstrin homology domain from2 dapp1/phish in complex with inositol 1,3,4,5-3 tetrakisphosphate 32 c1m6yA_ not modelled 11.4 17 PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah 33 d2p5ka1 not modelled 11.4 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 34 c3uo9B_ not modelled 10.9 15 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 35 d1wsca1 not modelled 10.6 18 Fold:AMMECR1-like Superfamily:AMMECR1-like Family:AMMECR1-like 36 c3ayhA_ not modelled 10.5 13 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii 37 d1aoya_ not modelled 10.3 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 38 c3b73A_ not modelled 10.3 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phih1 repressor-like protein; PDBTitle: crystal structure of the phih1 repressor-like protein from2 haloarcula marismortui 39 c1b4aA_ not modelled 10.2 29 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus 40 d1xdza_ not modelled 10.1 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Glucose-inhibited division protein B (GidB) 41 d1f9na1 not modelled 10.1 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 42 c2p0vA_ not modelled 10.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bt3781; PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58 43 d2p0va1 not modelled 10.0 24 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 44 d1v9va1 not modelled 9.7 19 Fold:Bromodomain-like Superfamily:MAST3 pre-PK domain-like Family:MAST3 pre-PK domain-like 45 d2nvpa1 not modelled 9.3 33 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 46 d1b4aa1 not modelled 9.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 47 c3ereD_ not modelled 9.1 36 PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator 48 d2nn5a1 not modelled 8.6 24 Fold:TBP-like Superfamily:Bet v1-like Family:AHSA1 domain 49 c2kxwB_ not modelled 8.3 50 PDB header:calcium-binding protein/metal transport Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha; PDBTitle: structure of the c-domain fragment of apo calmodulin bound to the iq2 motif of nav1.2 50 d1eo0a_ not modelled 7.8 21 Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 51 c2dymE_ not modelled 7.8 8 PDB header:protein turnover/protein turnover Chain: E: PDB Molecule:autophagy protein 5; PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex 52 c3ivuB_ not modelled 7.6 18 PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og 53 c3r9jD_ not modelled 7.6 19 PDB header:cell cycle,hydrolase/cell cycle Chain: D: PDB Molecule:cell division topological specificity factor; PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex 54 d2c35a1 not modelled 7.4 17 Fold:SAM domain-like Superfamily:HRDC-like Family:RNA polymerase II subunit RBP4 (RpoF) 55 c3ss4C_ not modelled 7.4 15 PDB header:hydrolase Chain: C: PDB Molecule:glutaminase c; PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form 56 c3htuE_ not modelled 7.2 20 PDB header:protein transport Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25; PDBTitle: crystal structure of the human vps25-vps20 subcomplex 57 d2etha1 not modelled 6.7 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 58 c2q9rA_ not modelled 6.6 29 PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function; PDBTitle: crystal structure of a duf416 family protein (sbal_3149) from2 shewanella baltica os155 at 1.91 a resolution 59 c3izct_ not modelled 6.5 25 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein rpl19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 60 c3lvuB_ not modelled 6.5 13 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi 61 d1wjta_ not modelled 6.4 23 Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 62 d2c0sa1 not modelled 6.4 38 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like 63 c3v4gA_ not modelled 6.3 23 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 64 c2kwuA_ not modelled 6.3 38 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin 65 d1zq7a1 not modelled 6.3 19 Fold:AMMECR1-like Superfamily:AMMECR1-like Family:AMMECR1-like 66 d2ea9a1 not modelled 6.3 42 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 67 d1wfya_ not modelled 6.0 39 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 68 d2h28a1 not modelled 6.0 39 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 69 c2wqmA_ not modelled 5.8 14 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase nek7; PDBTitle: structure of apo human nek7 70 d2dy1a4 not modelled 5.8 31 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 71 c1wlzD_ not modelled 5.6 20 PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis 72 d1wlza1 not modelled 5.6 20 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 73 d1gh6a_ not modelled 5.6 15 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 74 d2fcea1 not modelled 5.6 25 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 75 d1iira_ not modelled 5.6 26 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 76 d1mw7a_ not modelled 5.6 23 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 77 d1ucda_ not modelled 5.5 11 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 78 d2inwa1 not modelled 5.5 44 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 79 c2ckzC_ not modelled 5.3 21 PDB header:transferase Chain: C: PDB Molecule:dna-directed rna polymerase iii 18 kd PDBTitle: x-ray structure of rna polymerase iii subcomplex c17-c25. 80 c2k42A_ not modelled 5.3 11 PDB header:signaling protein Chain: A: PDB Molecule:wiskott-aldrich syndrome protein; PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector 81 d2nxpa1 not modelled 5.2 10 Fold:Taf5 N-terminal domain-like Superfamily:Taf5 N-terminal domain-like Family:Taf5 N-terminal domain-like 82 c2p6pB_ not modelled 5.2 15 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 83 c1wg8B_ not modelled 5.1 18 PDB header:transferase Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8.