Job Description P33650 Confidence 98.70% Date Thu Jan 5 11:52:32 GMT 2012 Rank 235 Aligned Residues 256 % Identity 15% Template c3snhA_ PDB info PDB header:endocytosis Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of nucleotide-free human dynamin1 Resolution 3.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
Predicted Secondary structure																									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	G	L	I	G	N	P	N	S	G	K	T	T	L	F	N	Q	L	T	G	S	R	.	Q	R	V	G	N	W	A	G	V	T	V	E	R	K	E	G	Q	F	S	T	T	D	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.						.	.		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.		.
Template Sequence		Q	I	A	V	V	G	G	Q	S	A	G	K	S	S	V	L	E	N	F	V	G	R	D	F	L	P	R	G	S	.	.	G	.	T	R	R	P	L	V	L	Q	L	V	N	A	T	T	E	Y	A	E	F	L	H	C	K	G	K	K	F	T	D	F	E	E	V	R	L	E	I	E	A	E	T	D	R	V	T	K	G
Template Known Secondary structure									T	T												T	S			S		S	S		.	.		.			S										S	S						T	T	T		S			B																	T
Template Predicted Secondary structure																															.	.		.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
																			52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	L	V	D	L	P	G	T	Y	S	L	T	T	I	S	S	Q	T	S	L	D	E	Q	I	A	C	H	Y	I	L	S	G	D	A	D	L	L	I	N	V	V	D	A	S	N	L	.	.	.	E	R	N	L	Y	L	T	L	Q	L	L	E	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.														.													.	.	.
Template Conservation																																				.	.	.	.														.
Template Sequence		I	S	P	V	P	I	N	L	R	V	Y	S	P	H	V	L	N	L	T	L	V	D	L	P	G	M	T	K	P	D	I	E	F	Q	.	.	.	.	I	R	D	M	L	M	Q	F	V	T	K	E	N	.	C	L	I	L	A	V	S	P	A	N	S	D	L	A	N	S	D	A	L	K	V	A	K	E	V	D	P	Q
Template Known Secondary structure				S										S	S	S		S																		.	.	.	.											S	T	T	.									T	T	S		S	T	T												S	S
Template Predicted Secondary structure																																				.	.	.	.														.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.
Predicted Secondary structure																								.																						.	.	.	.	.	.																											.
Query SS confidence																								.																						.	.	.	.	.	.																											.
Query Sequence		G	I	P	C	I	V	A	L	N	M	L	D	I	A	E	K	Q	N	I	R	I	E	.	I	D	A	L	S	A	R	L	G	C	P	V	I	P	L	V	S	T	R	G	R	.	.	.	.	.	.	G	I	E	A	L	K	L	A	I	D	R	Y	K	A	N	E	N	V	E	L	V	H	Y	A	Q	P	.	L	L	N
Query Conservation																								.																						.	.	.	.	.	.																											.
Alig confidence																								.																						.	.	.	.	.	.																											.
Template Conservation
Template Sequence		G	Q	R	T	I	G	V	I	T	K	L	D	L	M	D	E	G	T	D	A	R	D	V	L	E	N	K	L	L	P	L	R	R	G	Y	I	G	V	V	N	R	S	Q	K	D	I	D	G	K	K	D	I	T	A	A	L	A	A	E	R	K	F	F	L	S	H	P	S	Y	R	H	L	A	D	R	M	G	T	P	Y
Template Known Secondary structure		S	S	S								S	T	T	S		T	T								T	T		S	S			S	S													S	S	S	S																T						T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	D	S	L	A	K	V	M	P	S	D	I	P	L	K	Q	R	R	W	L	G	L	Q	M	L	E	G	D	I	Y	S	R	A	Y	A	G	E	A	S	Q	H	L	D	A	A	L	A	R	L	R	N	E	M	D	D	P	A	L	H	I	A	D	A	R	Y	Q	C	I	A	A	I	C	D	V	V	S	N	T	L
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	K	V	L	N	Q	Q	L	T	N	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	T	L	P	G	L	R	N	K	L	Q	S	Q	L	L	S	I	E	K	E	V	E	E	Y	K	N	F	R	P	D	D	P	A	R	K	T	K	A	L	L	Q	M	V	Q	Q	F	A	V	D	F	E
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							T	T	T	S	S	S	S	S														T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.																290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	E	P	S	R	F	T	T	A	V	D	K	I	V	L	N	R	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	I	E	G	S	G	G	A	R	I	N	R	I	F	H	E	R	F	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions