Job Description P25772 Confidence 98.87% Date Thu Jan 5 11:42:38 GMT 2012 Rank 16 Aligned Residues 247 % Identity 18% Template c2hivA_ PDB info PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from s. solfataricus Resolution 2.05 Å

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		90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	V	M	H	P	V	.	A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V
Query Conservation								.
Alig confidence								.					.														.	.																								.								.	.	.	.
Template Conservation													.														.	.																								.								.	.	.	.
Template Sequence		Q	V	G	I	P	I	R	P	M	L	A	.	E	R	L	S	N	P	E	E	I	L	K	K	M	.	.	G	G	N	A	I	V	D	Y	K	Y	D	G	E	R	A	Q	I	H	K	K	E	D	K	.	I	F	I	F	S	R	R	.	.	.	.	L	E	N	I	T	S	Q	Y	P	D	V	V	D	Y	V	S	K	Y
Template Known Secondary structure			T	T	S								.				S									T	.	.	T	T									S	S									T	T		.						T	T	.	.	.	.			B		G	G	G
Template Predicted Secondary structure													.														.	.																								.								.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																			.	.											.	.	.	.	.	.
Query SS confidence																																																			.	.											.	.	.	.	.	.
Query Sequence		S	G	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	N	S	.	.	L	G	V	F	V	W	A	W	P	D	.	.	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A
Query Conservation																																																			.	.											.	.	.	.	.	.
Alig confidence					.												.	.	.	.	.																														.	.											.	.	.	.	.	.
Template Conservation					.												.	.	.	.	.
Template Sequence		I	E	G	.	K	E	F	I	I	E	G	E	I	V	A	.	.	.	.	.	I	D	P	E	S	G	E	M	R	P	F	Q	E	L	M	H	R	K	R	K	S	D	I	Y	E	A	I	K	E	Y	P	V	N	V	F	L	F	D	L	M	Y	Y	E	D	V	D	Y	T	T	K	P	L	E	A	R	R	K	L	L	E
Template Known Secondary structure		B			.	S	S										.	.	.	.	.	B		T	T	T			B			T										S									S													T	T				T	T	S
Template Predicted Secondary structure					.												.	.	.	.	.
Template SS confidence
		300	.	.		.	.	.	.	.	.	.	310	.	.	.						.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		241	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310
Predicted Secondary structure											.	.	.																																																											.	.	.	.	.	.	.
Query SS confidence											.	.	.																																																											.	.	.	.	.	.	.
Query Sequence		T	A	G	F	T	L	T	Q	T	.	.	.	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	.	.	.	.	.	.	.	V	A	Q
Query Conservation											.	.	.																																																											.	.	.	.	.	.	.
Alig confidence											.	.	.																							.	.	.	.																									.	.	.						.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.																									.	.	.
Template Sequence		S	I	V	K	P	N	D	Y	V	K	I	A	H	H	I	Q	A	N	N	V	E	D	L	K	S	F	F	Y	R	A	I	S	E	G	.	.	.	.	G	E	G	V	M	V	K	A	I	G	K	D	A	I	Y	Q	A	G	A	R	G	W	L	W	.	.	.	I	K	L	K	R	D	Y	Q	S	E	M	A	D	T	V
Template Known Secondary structure				B				S	S										S	S														T	T	.	.	.	.										S	T	T					T	T							.	.	.					T	T		T	T	S	S
Template Predicted Secondary structure																																				.	.	.	.																									.	.	.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.					.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.				.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure														.								.	.																		.
Query SS confidence														.								.	.																		.
Query Sequence		V	A	E	V	K	A	I	Q	F	A	V	G	.	K	S	G	K	I	S	V	.	.	V	A	S	L	A	P	V	M	L	D	D	K	K	V	Q	R	V	.	N	I	G	S	V	R	R	W	Q	E	W
Query Conservation														.								.	.																		.
Alig confidence														.								.	.																		.
Template Conservation
Template Sequence		D	L	V	V	V	G	G	F	Y	G	K	G	K	R	G	G	K	I	S	S	L	L	M	A	A	Y	N	P	K	T	D	S	F	E	S	V	C	K	V	A	S	G	F	S	D	E	Q	L	D	E	L
Template Known Secondary structure												S	G	G	G	T	T	S											T	T	T	T										B	S
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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