Email l.a.kelley@imperial.ac.uk Description P29013 Date Thu Jan 5 11:45:33 GMT 2012 Unique Job ID 77ac6a0f30444808

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3b7uX_ 92.2 19 PDB header:hydrolase Chain: X: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: leukotriene a4 hydrolase complexed with kelatorphan 2 c3ciaA_ 89.9 15 PDB header:hydrolase Chain: A: PDB Molecule:cold-active aminopeptidase; PDBTitle: crystal structure of cold-aminopeptidase from colwellia2 psychrerythraea 3 c3iukB_ 89.7 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 4 c2xpyA_ 84.1 20 PDB header:hydrolase Chain: A: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: structure of native leukotriene a4 hydrolase from saccharomyces2 cerevisiae 5 c3o0yC_ 83.6 24 PDB header:lipid binding protein Chain: C: PDB Molecule:lipoprotein; PDBTitle: the crystal structure of the putative lipoprotein from colwellia2 psychrerythraea 6 c3se6A_ 79.7 16 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2; PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2 7 c3qnfA_ 65.7 13 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of the open state of human endoplasmic reticulum2 aminopeptidase 1 erap1 8 c1z5hB_ 65.4 21 PDB header:hydrolase Chain: B: PDB Molecule:tricorn protease interacting factor f3; PDBTitle: crystal structures of the tricorn interacting factor f32 from thermoplasma acidophilum 9 c1yewC_ 50.4 43 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 10 c3mdjB_ 50.1 14 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: er aminopeptidase, erap1, bound to the zinc aminopeptidase inhibitor,2 bestatin 11 d1q8ca_ 35.9 23 Fold:NusB-like Superfamily:NusB-like Family:Hypothetical protein MG027 12 d3b7sa3 34.3 19 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Leukotriene A4 hydrolase catalytic domain 13 c3chxG_ 33.0 43 PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 14 c2xdtA_ 31.0 18 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of the soluble domain of human2 endoplasmic reticulum aminopeptidase 1 erap1 15 d1wpba_ 29.9 9 Fold:YfbU-like Superfamily:YfbU-like Family:YfbU-like 16 c2knaA_ 29.7 18 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4; PDBTitle: solution structure of uba domain of xiap 17 c2qffA_ 28.5 19 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of staphylococcal complement inhibitor 18 c2da4A_ 27.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 19 c1ceuA_ 24.6 22 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 20 d1dl2a_ 23.7 17 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 21 c3t4aG_ not modelled 23.4 25 PDB header:immune system Chain: G: PDB Molecule:fibrinogen-binding protein; PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution 22 d1x9da1 not modelled 23.3 20 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 23 c1x9dA_ not modelled 23.3 20 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1, PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue 24 d2zdra2 not modelled 23.1 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 25 c2kfvA_ not modelled 22.1 13 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 3; PDBTitle: structure of the amino-terminal domain of human fk506-2 binding protein 3 / northeast structural genomics3 consortium target ht99a 26 c2vo9C_ not modelled 21.0 16 PDB header:hydrolase Chain: C: PDB Molecule:l-alanyl-d-glutamate peptidase; PDBTitle: crystal structure of the enzymatically active domain of the2 listeria monocytogenes bacteriophage 500 endolysin ply500 27 c1g6iA_ not modelled 20.6 17 PDB header:hydrolase Chain: A: PDB Molecule:class i alpha-1,2-mannosidase; PDBTitle: crystal structure of the yeast alpha-1,2-mannosidase with bound 1-2 deoxymannojirimycin at 1.59 a resolution 28 c2gtqA_ not modelled 18.4 12 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis 29 d1lvfa_ not modelled 18.2 22 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 30 d1x2na1 not modelled 17.7 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 31 d1hcua_ not modelled 17.2 11 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 32 d1qd1a2 not modelled 17.0 20 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 33 d1nxca_ not modelled 16.8 16 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 34 d1m15a1 not modelled 16.7 19 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 35 d2vo9a1 not modelled 16.6 16 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:VanY-like 36 c3bpqC_ not modelled 16.3 26 PDB header:toxin Chain: C: PDB Molecule:antitoxin relb3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 37 d2oc6a1 not modelled 15.8 23 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 38 c3fpvC_ not modelled 15.7 10 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 39 c2kvrA_ not modelled 15.6 4 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7; PDBTitle: solution nmr structure of human ubiquitin specific protease2 usp7 ubl domain (residues 537-664). nesg target hr4395c/3 sgc-toronto 40 d1du6a_ not modelled 15.4 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 41 d1ndba1 not modelled 15.3 23 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 42 c2nrzB_ not modelled 14.9 19 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 43 c3ayhA_ not modelled 14.7 22 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii 44 d2ri9a1 not modelled 14.3 13 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 45 d3cx5i1 not modelled 13.9 6 Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 46 c1krfA_ not modelled 13.8 13 PDB header:hydrolase Chain: A: PDB Molecule:mannosyl-oligosaccharide alpha-1,2-mannosidase; PDBTitle: structure of p. citrinum alpha 1,2-mannosidase reveals the basis for2 differences in specificity of the er and golgi class i enzymes 47 c2xr9A_ not modelled 13.8 26 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 48 c3izbU_ not modelled 12.9 20 PDB header:ribosome Chain: U: PDB Molecule:40s ribosomal protein s24; PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 49 d1mv8a1 not modelled 12.8 28 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 50 d1miua2 not modelled 12.8 8 Fold:BRCA2 tower domain Superfamily:BRCA2 tower domain Family:BRCA2 tower domain 51 d1ftra2 not modelled 12.7 86 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 52 c3mlcC_ not modelled 12.6 20 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 53 d2g1da1 not modelled 12.2 9 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 54 d1m5sa2 not modelled 12.1 86 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 55 d1mylb_ not modelled 12.1 62 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 56 d1m5ha2 not modelled 12.0 86 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 57 c3ezkB_ not modelled 12.0 29 PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions 58 d1eg1a_ not modelled 12.0 26 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolase family 7 catalytic core 59 c2vzaD_ not modelled 11.9 29 PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa 60 c3pbpL_ not modelled 11.7 80 PDB header:transport protein,structural protein Chain: L: PDB Molecule:nucleoporin nup159; PDBTitle: structure of the yeast heterotrimeric nup82-nup159-nup116 nucleoporin2 complex 61 d1x6ma_ not modelled 11.5 18 Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa 62 c3pg8B_ not modelled 11.5 13 PDB header:transferase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima 63 d1zxoa1 not modelled 11.2 57 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 64 c2xrgA_ not modelled 11.2 26 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 65 c2dmnA_ not modelled 11.1 24 PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif2lx; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx 66 d2a2la1 not modelled 11.1 10 Fold:Profilin-like Superfamily:GlcG-like Family:GlcG-like 67 d1crka1 not modelled 10.8 19 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 68 c3bbnR_ not modelled 10.8 38 PDB header:ribosome Chain: R: PDB Molecule:ribosomal protein s18; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 69 c3e38A_ not modelled 10.6 29 PDB header:hydrolase Chain: A: PDB Molecule:two-domain protein containing predicted php-like metal- PDBTitle: crystal structure of a two-domain protein containing predicted php-2 like metal-dependent phosphoesterase (bvu_3505) from bacteroides3 vulgatus atcc 8482 at 2.20 a resolution 70 d1myla_ not modelled 10.6 62 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 71 c3mgwA_ not modelled 10.5 25 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme 72 c3cezA_ not modelled 10.4 29 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei 73 c1w9iA_ not modelled 10.3 13 PDB header:myosin Chain: A: PDB Molecule:myosin ii heavy chain; PDBTitle: myosin ii dictyostelium discoideum motor domain s456y bound2 with mgadp-befx 74 d1t1ua1 not modelled 10.2 23 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 75 c2y8pA_ not modelled 10.2 8 PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli 76 c2ktrA_ not modelled 10.2 7 PDB header:signaling protein, transport protein Chain: A: PDB Molecule:sequestosome-1; PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs 77 d1bazb_ not modelled 10.1 62 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 78 c2nrrA_ not modelled 10.1 25 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc 79 c2l1uA_ not modelled 10.0 50 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein 80 c3c65A_ not modelled 10.0 12 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain 81 c3mnwP_ not modelled 9.9 30 PDB header:immune system Chain: P: PDB Molecule:gp41; PDBTitle: crystal structure of the non-neutralizing hiv antibody 13h11 fab2 fragment with a gp41 mper-derived peptide in a helical conformation 82 d1xrsb2 not modelled 9.9 16 Fold:Dodecin subunit-like Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 83 d1atia2 not modelled 9.9 10 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 84 d1b28a_ not modelled 9.7 62 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 85 d1qh4a1 not modelled 9.6 13 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 86 c2p58C_ not modelled 9.5 26 PDB header:transport protein/chaperone Chain: C: PDB Molecule:putative type iii secretion protein yscg; PDBTitle: structure of the yersinia pestis type iii secretion system2 needle protein yscf in complex with its chaperones3 ysce/yscg 87 d1jjcb2 not modelled 9.4 22 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 88 d2ctda1 not modelled 9.4 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 89 d1xm0a1 not modelled 9.4 50 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 90 d2qkwa1 not modelled 9.3 32 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Avirulence protein AvrPto Family:Avirulence protein AvrPto 91 c2qkwA_ not modelled 9.3 32 PDB header:transferase Chain: A: PDB Molecule:avirulence protein; PDBTitle: structural basis for activation of plant immunity by2 bacterial effector protein avrpto 92 c3kztB_ not modelled 9.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 93 c2k8dA_ not modelled 9.2 43 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb; PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase 94 c1l6jA_ not modelled 9.2 60 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-9; PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b). 95 d1myka_ not modelled 9.2 62 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 96 c1xuzA_ not modelled 9.2 19 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 97 c3mnzP_ not modelled 9.1 30 PDB header:immune system Chain: P: PDB Molecule:gp41 mper-derived peptide; PDBTitle: crystal structure of the non-neutralizing hiv antibody 13h11 fab2 fragment with a gp41 mper-derived peptide bearing ala substitutions3 in a helical conformation 98 d1bdta_ not modelled 9.0 62 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 99 c2kl4A_ not modelled 9.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2032 protein; PDBTitle: nmr structure of the protein nb7804a