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Job DescriptionP25718
Confidence100.00%DateThu Jan 5 11:42:17 GMT 2012
Rank4Aligned Residues409
% Identity26%Templatec1cygA_
PDB info PDB header:glycosyltransferaseChain: A: PDB Molecule:cyclodextrin glucanotransferase; PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   182.......190.........200.........210.........220.........230...... ...240.........250.........
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Query Sequence  APFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLD. . YLQQLGVNALWISAPFEQIHGWV
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Template Sequence  NKVNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVM
Template Known Secondary structure 
TT

TT


GGGT

S
GGG


GGGB
GGG
STTSB



TSTTTTTT









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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   260.........270.........280.........290.........300.........310.........320.........330.........
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Query Sequence  GGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEV
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Template Sequence  NDASGSA. . . . SYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLL
Template Known Secondary structure  SSSS


....STTS
S
TTT

TT

TT

SS
TTSTTTT
TT
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   85....90. ........100.........110.........120.........130.........140.........150.........160
 
   340.........350.........360.........370.........380.........390.........400.........410.........
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Query Sequence  KKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPV
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Template Sequence  GGYTNDANMYFHHNGGTTFSSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EDGIYRNLFDLADLNHQ. . . . . . . . .
Template Known Secondary structure 
STT
TT

B

S
B


SS................................SSBSTTB
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   161........170.........180.. .......190.........
 
   420.........430.........440.........450.........460.........470.........480.........490.........
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Query Sequence  FYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDDKPFW
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Template Sequence  . . . . . . . . . . . . . . NPVIDRYLKDAVKMWI. DMGIDGIRMDAVKHMPFGWQKSLMDEIDNY. . . . . . . . . . . . . . . RPVF
Template Known Secondary structure  ..............S.TTT

S
GGGS
S...............


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   200.........210..... ....220.........230.........240..... ....
 
   500......... 510.........520.........530....... ..540.........550....... ..560.........570
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Query Sequence  MTGEAWGHGV. . . . MQSDYYRHGFDAMINFDYQEQAAKAVDC. . . . LAQMDTTWQQMAEKLQGFNV. LSYLSSHDTRLFR
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Template Conservation     
                                                               
 
  


  
  
Template Sequence  TFGEWFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDTASAYDEVLDQVTFIDNHDMDRFM
Template Known Secondary structure 




TT


SS
B
TT
S


TTGGG

S

TTS

S
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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   571........580.........590.........600.........610.........620.........630.........640....
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Query Sequence  . . . . . . EGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIG
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Template Sequence  IDGGDPRKVDMALAVLLTSRGVPNIYYGTEQYMTGNGDPNN. . . . . RKMMSSFN. . . KNTRAYQVIQKLSSLRRNNPALA
Template Known Secondary structure 
TT

TSSSTTGGGT



STTGG.....G






...S
S
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   330.........340.........350.........360.........370 ........ .380.........390.........400.
 
   645....650..... ....660.........670...
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Query Sequence  AGKQTTLLLKQ. GYGFVREHGDDKVLVVWA
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Template Sequence  YGDTEQRWINGDVYVYERQFGKDVVLVAVN
Template Known Secondary structure 

SSTT
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   402.......410.........420.........430.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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