Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	G	K	G	G	L	G	N	L	M	K	Q	A	Q	Q	M	Q	E	K	M	Q	K	M	Q	E	E	I	A	Q	L	E	V	T	G	E	S	G	A	G	L	V	K	V	T	I	N	G	A	H	N	C	R	R	V	E	I	D	P	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Sequence		L	L	E	D	D	K	E	M	L	E	D	L	V	A	A	A	F	N	D	A	A	R	R	I	E	E	T	Q	K	E	K	M	A	S	V	S	S	G	M	Q	L	P	P	G	F	K	M	P	F
Secondary structure
SS confidence
Disorder					?																																?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pug chain A Region: 11 - 104 Aligned: 94 Modelled: 94 Confidence: 99.9% Identity: 100% Fold: YbaB-like Superfamily: YbaB-like Family: YbaB-like Phyre2 PDB 1j8b chain A Region: 7 - 98 Aligned: 92 Modelled: 92 Confidence: 99.9% Identity: 82% Fold: YbaB-like Superfamily: YbaB-like Family: YbaB-like Phyre2 PDB 1ybx chain A Region: 7 - 96 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 33% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum Phyre2 PDB 3f42 chain A Region: 6 - 97 Aligned: 91 Modelled: 92 Confidence: 99.9% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori Phyre2 PDB 1pug chain B Region: 18 - 90 Aligned: 73 Modelled: 73 Confidence: 99.7% Identity: 100% Fold: YbaB-like Superfamily: YbaB-like Family: YbaB-like Phyre2 PDB 1lr0 chain A Region: 41 - 80 Aligned: 37 Modelled: 40 Confidence: 78.2% Identity: 11% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TolA Phyre2 PDB 2ba0 chain G domain 2 Region: 38 - 82 Aligned: 44 Modelled: 45 Confidence: 74.0% Identity: 18% Fold: Ribonuclease PH domain 2-like Superfamily: Ribonuclease PH domain 2-like Family: Ribonuclease PH domain 2-like Phyre2 PDB 2x9a chain B Region: 41 - 80 Aligned: 35 Modelled: 40 Confidence: 67.8% Identity: 17% PDB header:viral protein Chain: B: PDB Molecule:membrane spanning protein, required for outer membrane PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola Phyre2 PDB 2nn6 chain C domain 2 Region: 39 - 82 Aligned: 43 Modelled: 44 Confidence: 64.4% Identity: 9% Fold: Ribonuclease PH domain 2-like Superfamily: Ribonuclease PH domain 2-like Family: Ribonuclease PH domain 2-like Phyre2 PDB 1tol chain A domain 2 Region: 41 - 80 Aligned: 35 Modelled: 40 Confidence: 61.1% Identity: 17% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TolA Phyre2 PDB 2nn6 chain E domain 2 Region: 39 - 94 Aligned: 55 Modelled: 56 Confidence: 51.2% Identity: 7% Fold: Ribonuclease PH domain 2-like Superfamily: Ribonuclease PH domain 2-like Family: Ribonuclease PH domain 2-like Phyre2 PDB 2je6 chain A domain 2 Region: 38 - 91 Aligned: 53 Modelled: 54 Confidence: 48.6% Identity: 9% Fold: Ribonuclease PH domain 2-like Superfamily: Ribonuclease PH domain 2-like Family: Ribonuclease PH domain 2-like Phyre2 PDB 2nn6 chain A domain 2 Region: 39 - 94 Aligned: 55 Modelled: 56 Confidence: 46.4% Identity: 15% Fold: Ribonuclease PH domain 2-like Superfamily: Ribonuclease PH domain 2-like Family: Ribonuclease PH domain 2-like Phyre2 PDB 1xx3 chain A Region: 26 - 79 Aligned: 48 Modelled: 54 Confidence: 46.3% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd Phyre2 PDB 2v4u chain A Region: 31 - 90 Aligned: 59 Modelled: 60 Confidence: 41.9% Identity: 12% PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine Phyre2 PDB 3brc chain A Region: 38 - 84 Aligned: 46 Modelled: 47 Confidence: 38.6% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum Phyre2 PDB 1oys chain A domain 2 Region: 38 - 89 Aligned: 52 Modelled: 52 Confidence: 36.3% Identity: 13% Fold: Ribonuclease PH domain 2-like Superfamily: Ribonuclease PH domain 2-like Family: Ribonuclease PH domain 2-like Phyre2 PDB 2gsk chain B domain 1 Region: 26 - 57 Aligned: 29 Modelled: 32 Confidence: 30.7% Identity: 21% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TonB Phyre2 PDB 3h7f chain B Region: 65 - 109 Aligned: 45 Modelled: 45 Confidence: 30.0% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Phyre2 PDB 1u07 chain A Region: 26 - 57 Aligned: 29 Modelled: 32 Confidence: 27.9% Identity: 21% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TonB Phyre2 1 d1puga_ 2 d1j8ba_ 3 c1ybxA_ 4 c3f42A_ 5 d1pugb_ 6 d1lr0a_ 7 d2ba0g2 8 c2x9aB_ 9 d2nn6c2 10 d1tola2 11 d2nn6e2 12 d2je6a2 13 d2nn6a2 14 c1xx3A_ 15 c2v4uA_ 16 c3brcA_ 17 d1oysa2 18 d2gskb1 19 c3h7fB_ 20 d1u07a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1puga_ 99.9 100 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 2 d1j8ba_ 99.9 82 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 3 c1ybxA_ 99.9 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 4 c3f42A_ 99.9 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori 5 d1pugb_ 99.7 100 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 6 d1lr0a_ 78.2 11 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TolA 7 d2ba0g2 74.0 18 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 8 c2x9aB_ 67.8 17 PDB header:viral protein Chain: B: PDB Molecule:membrane spanning protein, required for outer membrane PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola 9 d2nn6c2 64.4 9 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 10 d1tola2 61.1 17 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TolA 11 d2nn6e2 51.2 7 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 12 d2je6a2 48.6 9 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 13 d2nn6a2 46.4 15 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 14 c1xx3A_ 46.3 21 PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd 15 c2v4uA_ 41.9 12 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 16 c3brcA_ 38.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum 17 d1oysa2 36.3 13 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 18 d2gskb1 30.7 21 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 19 c3h7fB_ 30.0 13 PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis 20 d1u07a_ 27.9 21 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 21 c2boiA_ not modelled 26.8 24 PDB header:lectin Chain: A: PDB Molecule:cv-iil lectin; PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside 22 d2chha1 not modelled 26.4 16 Fold:Calcium-mediated lectin Superfamily:Calcium-mediated lectin Family:Calcium-mediated lectin 23 c2vnvC_ not modelled 26.4 21 PDB header:sugar-binding protein Chain: C: PDB Molecule:bcla; PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution 24 d1uzva_ not modelled 24.1 20 Fold:Calcium-mediated lectin Superfamily:Calcium-mediated lectin Family:Calcium-mediated lectin 25 c2grxC_ not modelled 23.8 21 PDB header:metal transport Chain: C: PDB Molecule:protein tonb; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 26 d1ib8a2 not modelled 23.7 8 Fold:Alpha-lytic protease prodomain-like Superfamily:YhbC-like, N-terminal domain Family:YhbC-like, N-terminal domain 27 c1udsA_ not modelled 22.1 13 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus 28 c2xr4A_ not modelled 22.1 24 PDB header:sugar binding protein Chain: A: PDB Molecule:lectin; PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia 29 c2kzxA_ not modelled 21.9 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116 30 c3nvaB_ not modelled 21.6 21 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 31 c3b4tC_ not modelled 21.5 6 PDB header:transferase Chain: C: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340 32 c3o6uB_ not modelled 20.7 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein cpe2226; PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195 33 c2b1kA_ not modelled 20.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein 34 c2npbA_ not modelled 20.4 24 PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw 35 c2k9kA_ not modelled 20.3 12 PDB header:metal transport Chain: A: PDB Molecule:tonb2; PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum 36 c2owyB_ not modelled 19.8 12 PDB header:dna binding protein Chain: B: PDB Molecule:recombination-associated protein rdgc; PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding 37 c1ib8A_ not modelled 18.4 8 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:conserved protein sp14.3; PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene 38 c3eytA_ not modelled 17.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 39 c3dd6A_ not modelled 17.4 20 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of rph, an exoribonuclease from bacillus2 anthracis at 1.7 a resolution 40 d2fqla1 not modelled 16.7 10 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 41 d1ihra_ not modelled 16.3 24 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 42 d2ga5a1 not modelled 16.0 10 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 43 c2pnzB_ not modelled 15.9 18 PDB header:hydrolase/hydrolase Chain: B: PDB Molecule:probable exosome complex exonuclease 2; PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with udp and gmp 44 c1r6mA_ not modelled 15.7 11 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of the trna processing enzyme rnase ph from2 pseudomonas aeruginosa in complex with phosphate 45 d1e2ya_ not modelled 15.2 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 46 c1x2gB_ not modelled 14.3 14 PDB header:ligase Chain: B: PDB Molecule:lipoate-protein ligase a; PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli 47 c2nn6C_ not modelled 14.1 11 PDB header:hydrolase/transferase Chain: C: PDB Molecule:exosome complex exonuclease rrp43; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 48 d1neia_ not modelled 13.6 18 Fold:Hypothetical protein YoaG Superfamily:Hypothetical protein YoaG Family:Hypothetical protein YoaG 49 c2nn6E_ not modelled 12.4 5 PDB header:hydrolase/transferase Chain: E: PDB Molecule:exosome complex exonuclease rrp42; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 50 c1vqzA_ not modelled 12.0 19 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 51 d1vqza1 not modelled 12.0 18 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 52 c2z7eB_ not modelled 11.1 8 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 53 c2qzbB_ not modelled 10.8 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yfey; PDBTitle: crystal structure of the uncharacterized protein yfey from escherichia2 coli 54 c2wnrC_ not modelled 9.8 9 PDB header:hydrolase Chain: C: PDB Molecule:probable exosome complex exonuclease 2; PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly 55 c2wp8A_ not modelled 9.7 16 PDB header:hydrolase Chain: A: PDB Molecule:exosome complex component rrp45; PDBTitle: yeast rrp44 nuclease 56 d1xvqa_ not modelled 9.3 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 57 d1we0a1 not modelled 9.2 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 58 c2vzkD_ not modelled 8.7 23 PDB header:transferase Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain; PDBTitle: structure of the acyl-enzyme complex of an n-terminal2 nucleophile (ntn) hydrolase, oat2 59 c1vraB_ not modelled 8.7 26 PDB header:transferase Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution 60 c2ad5B_ not modelled 8.0 27 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 61 d1zofa1 not modelled 8.0 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 62 c1zyeL_ not modelled 7.8 15 PDB header:oxidoreductase Chain: L: PDB Molecule:thioredoxin-dependent peroxide reductase; PDBTitle: crystal strucutre analysis of bovine mitochondrial peroxiredoxin iii 63 d2cv4a1 not modelled 7.8 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 64 c3fw2A_ not modelled 7.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol-disulfide oxidoreductase; PDBTitle: c-terminal domain of putative thiol-disulfide oxidoreductase from2 bacteroides thetaiotaomicron. 65 c1jcgA_ not modelled 7.5 8 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 66 c3uowB_ not modelled 7.3 19 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 67 c1s94A_ not modelled 7.3 11 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei 68 d1s94a_ not modelled 7.3 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 69 d1k28d2 not modelled 7.1 38 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 70 c3h2dA_ not modelled 7.1 12 PDB header:signaling protein Chain: A: PDB Molecule:chec-like superfamily protein; PDBTitle: crystal structure of a chemotactic chec-like protein (so_3915) from2 shewanella oneidensis mr-1 at 1.86 a resolution 71 c2bmxB_ not modelled 7.1 6 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxidase c; PDBTitle: mycobacterium tuberculosis ahpc 72 d1m98a2 not modelled 7.1 29 Fold:Cystatin-like Superfamily:NTF2-like Family:Orange carotenoid protein, C-terminal domain 73 c3lorB_ not modelled 6.8 15 PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a 74 d2r7ka2 not modelled 6.7 16 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:PurP ATP-binding domain-like 75 d1z5ye1 not modelled 6.7 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 76 c1tolA_ not modelled 6.7 14 PDB header:viral protein Chain: A: PDB Molecule:protein (fusion protein consisting of minor coat PDBTitle: fusion of n-terminal domain of the minor coat protein from2 gene iii in phage m13, and c-terminal domain of e. coli3 protein-tola 77 d1n8ja_ not modelled 6.6 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 78 d3cdda1 not modelled 6.6 7 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 79 c3ghhA_ not modelled 6.5 40 PDB header:hydrolase Chain: A: PDB Molecule:ecto-nad+ glycohydrolase (cd38 molecule); PDBTitle: structural insights into the catalytic mechanism of cd38:2 evidence for a conformationally flexible covalent enzyme-3 substrate complex. 80 c3eukC_ not modelled 6.4 13 PDB header:cell cycle Chain: C: PDB Molecule:chromosome partition protein mukb, linker; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer 81 c3kebB_ not modelled 6.3 15 PDB header:oxidoreductase Chain: B: PDB Molecule:probable thiol peroxidase; PDBTitle: thiol peroxidase from chromobacterium violaceum 82 c2kxxA_ not modelled 6.2 20 PDB header:protein binding Chain: A: PDB Molecule:small protein a; PDBTitle: nmr structure of escherichia coli bame, a lipoprotein component of the2 beta-barrel assembly machinery complex 83 d1x2ga1 not modelled 6.2 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 84 d1knga_ not modelled 5.9 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 85 c3mxnA_ not modelled 5.9 20 PDB header:replication Chain: A: PDB Molecule:recq-mediated genome instability protein 1; PDBTitle: crystal structure of the rmi core complex 86 c2br2G_ not modelled 5.8 9 PDB header:hydrolase Chain: G: PDB Molecule:exosome complex exonuclease 2; PDBTitle: rnase ph core of the archaeal exosome 87 d1yexa1 not modelled 5.8 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 88 c3it4B_ not modelled 5.7 26 PDB header:transferase Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a 89 d1qmva_ not modelled 5.7 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 90 d1l4sa_ not modelled 5.7 7 Fold:Ribosome binding protein Y (YfiA homologue) Superfamily:Ribosome binding protein Y (YfiA homologue) Family:Ribosome binding protein Y (YfiA homologue) 91 c3fw6A_ not modelled 5.5 15 PDB header:hydrolase Chain: A: PDB Molecule:cellulase; PDBTitle: crystal structure of celm2, a bifunctional glucanase-2 xylanase protein from a metagenome library 92 d1yuwa1 not modelled 5.2 20 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 93 d1kn0a_ not modelled 5.1 23 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0