PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2pnzB_

Fold library id	PDB Header	Molecule	Title
c2pnzB_	PDB header: hydrolase/hydrolase	Chain: B: PDB Molecule: probable exosome complex exonuclease 2;	PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with udp and gmp

Links to external resources
Added to library: Tue Mar 16 13:30:44 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A G I M R D H I I N L L K E G K R I D D R G F E D Y R P I E I E V G V I E K A E G S A L V K L G S T Q V L V G I K T S L G E P F P D T P N M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T T
S
S S S S S T T
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G V M T T N V E L V P L A S P T F E P G P P D E R A I E L A R V I D R G I R E S K A L N L E K M V I V P G K I V R V V F I D V H V L D H D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T
S S S
T T S B
G G G G T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N L M D A I G I A A I A A L L N A R V P K V R Y N E E T G E V E T L D E T E P L P V E K I P V P V T F A K I G N I L V V D P S L D E E L V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
B
T T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . .

Sequence D G K I T I T T D E T G H I S A V Q K S E G G A F K L E E V M Y A V E T A F K K A E E I R K L I L E A V E K A K Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	G	I	M	R	D	H	I	I	N	L	L	K	E	G	K	R	I	D	D	R	G	F	E	D	Y	R	P	I	E	I	E	V	G	V	I	E	K	A	E	G	S	A	L	V	K	L	G	S	T	Q	V	L	V	G	I	K	T	S	L	G	E	P	F	P	D	T	P	N	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T			T	T	S			T	T										S		S	S	S	S	S								T	T																T	T		T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	V	M	T	T	N	V	E	L	V	P	L	A	S	P	T	F	E	P	G	P	P	D	E	R	A	I	E	L	A	R	V	I	D	R	G	I	R	E	S	K	A	L	N	L	E	K	M	V	I	V	P	G	K	I	V	R	V	V	F	I	D	V	H	V	L	D	H	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											G	G	G		T	T			S	S	S																			T	T	S	B		G	G	G	G				T	T	T															S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	L	M	D	A	I	G	I	A	A	I	A	A	L	L	N	A	R	V	P	K	V	R	Y	N	E	E	T	G	E	V	E	T	L	D	E	T	E	P	L	P	V	E	K	I	P	V	P	V	T	F	A	K	I	G	N	I	L	V	V	D	P	S	L	D	E	E	L	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T	T														B													T	T					S							T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Sequence	D	G	K	I	T	I	T	T	D	E	T	G	H	I	S	A	V	Q	K	S	E	G	G	A	F	K	L	E	E	V	M	Y	A	V	E	T	A	F	K	K	A	E	E	I	R	K	L	I	L	E	A	V	E	K	A	K	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S									T	T	S									S	S																																	T	T