Email l.a.kelley@imperial.ac.uk Description P24211 Date Thu Jan 5 11:41:16 GMT 2012 Unique Job ID 7337bfc9ae0db9b9

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1x3za1 47.4 9 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 2 c3mswA_ 37.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution 3 d2f4ma1 36.0 18 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 4 c3eswA_ 29.7 13 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 5 c1j5qB_ 21.8 24 PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus. 6 c2x12A_ 21.2 27 PDB header:cell adhesion Chain: A: PDB Molecule:fimbriae-associated protein fap1; PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae 7 d1pk6c_ 21.1 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 8 d1ei5a1 19.4 32 Fold:Streptavidin-like Superfamily:D-aminopeptidase, middle and C-terminal domains Family:D-aminopeptidase, middle and C-terminal domains 9 d1pk6b_ 18.3 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 10 c2oy7A_ 17.6 11 PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant 11 d1bcoa1 17.5 11 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 12 d1c3ha_ 17.2 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 13 c1gr3A_ 14.6 36 PDB header:collagen Chain: A: PDB Molecule:collagen x; PDBTitle: structure of the human collagen x nc1 trimer 14 d1gr3a_ 14.6 36 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 15 c3kifD_ 14.0 32 PDB header:sugar binding protein Chain: D: PDB Molecule:5-bladed -propeller lectin; PDBTitle: the crystal structures of two fragments truncated from 5-bladed -2 propeller lectin, tachylectin-2 (lib1-b7-18 and lib2-d2-15) 16 c2ka3C_ 12.2 38 PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain 17 c7apiB_ 11.8 6 PDB header:proteinase inhibitor Chain: B: PDB Molecule:alpha 1-antitrypsin; PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism 18 d2jdqd1 11.1 17 Fold:PB2 C-terminal domain-like Superfamily:PB2 C-terminal domain-like Family:PB2 C-terminal domain-like 19 d1pk6a_ 11.1 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 20 c2vtwF_ 11.0 27 PDB header:viral protein Chain: F: PDB Molecule:fiber protein 2; PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre 21 d1f1sa3 not modelled 10.8 23 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 22 c1jjoE_ not modelled 10.5 22 PDB header:signaling protein Chain: E: PDB Molecule:neuroserpin; PDBTitle: crystal structure of mouse neuroserpin (cleaved form) 23 d1m3ya2 not modelled 10.4 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54 24 d1o91a_ not modelled 10.4 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 25 c1o91B_ not modelled 10.4 31 PDB header:collagen Chain: B: PDB Molecule:collagen alpha 1(viii) chain; PDBTitle: crystal structure of a collagen viii nc1 domain trimer 26 c1m4xC_ not modelled 9.7 33 PDB header:virus Chain: C: PDB Molecule:pbcv-1 virus capsid; PDBTitle: pbcv-1 virus capsid, quasi-atomic model 27 d1w9pa2 not modelled 9.6 18 Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain 28 c1hleB_ not modelled 9.5 18 PDB header:hydrolase inhibitor(serine proteinase) Chain: B: PDB Molecule:horse leukocyte elastase inhibitor; PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution 29 d1brwa3 not modelled 9.4 23 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 30 d2tpta3 not modelled 9.0 19 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 31 d1ll7a2 not modelled 8.9 23 Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain 32 c3f02C_ not modelled 8.8 16 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:neuroserpin; PDBTitle: cleaved human neuroserpin 33 d1ulva3 not modelled 8.8 42 Fold:Immunoglobulin-like beta-sandwich Superfamily:CBD9-like Family:Glucodextranase, domain C 34 c2qshA_ not modelled 8.7 25 PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna repair protein rad4; PDBTitle: crystal structure of rad4-rad23 bound to a mismatch dna 35 d1zaka2 not modelled 8.6 33 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 36 c2iqcA_ not modelled 8.2 25 PDB header:protein binding Chain: A: PDB Molecule:fanconi anemia group f protein; PDBTitle: crystal structure of human fancf protein that functions in2 the assembly of a dna damage signaling complex 37 c3mmlD_ not modelled 8.1 21 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 38 c3rduA_ not modelled 8.1 18 PDB header:biotin binding protein Chain: A: PDB Molecule:streptavidin; PDBTitle: crystal structure of r7-2 streptavidin complexed with peg 39 c2h4qB_ not modelled 8.0 18 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation 40 d1zunb2 not modelled 7.8 25 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 41 c1dfcB_ not modelled 7.7 16 PDB header:structural protein Chain: B: PDB Molecule:fascin; PDBTitle: crystal structure of human fascin, an actin-crosslinking protein 42 c9paiB_ not modelled 7.6 12 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:protein (plasminogen activator inhibitor-1) residues 365- PDBTitle: cleaved substrate variant of plasminogen activator inhibitor-1 43 c1wwtA_ not modelled 7.5 17 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 44 d2ax3a2 not modelled 7.3 18 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 45 d1n7oa2 not modelled 7.3 16 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 46 c3kzsD_ not modelled 7.1 13 PDB header:hydrolase Chain: D: PDB Molecule:glycosyl hydrolase family 5; PDBTitle: crystal structure of glycosyl hydrolase family 5 (np_809925.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 47 c2rivB_ not modelled 7.0 6 PDB header:signaling protein Chain: B: PDB Molecule:thyroxine-binding globulin; PDBTitle: crystal structure of the reactive loop cleaved human thyroxine binding2 globulin 48 d1azpa_ not modelled 6.9 25 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 49 d1k8wa3 not modelled 6.8 27 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 50 d1gxma_ not modelled 6.8 33 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 51 d1vpra1 not modelled 6.8 60 Fold:Lipocalins Superfamily:Lipocalins Family:Dinoflagellate luciferase repeat 52 c2l92A_ not modelled 6.7 25 PDB header:dna binding protein Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns; PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f 53 d1gkpa1 not modelled 6.5 15 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 54 c2nqoB_ not modelled 6.4 12 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase 55 c2ksnA_ not modelled 6.3 22 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2 56 c1pgsA_ not modelled 6.3 63 PDB header:endoglycosidase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-d-glucosaminyl) PDBTitle: the three-dimensional structure of pngase f, a2 glycosylasparaginase from flavobacterium meningosepticum 57 d1w07a2 not modelled 5.9 13 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains 58 c2uywA_ not modelled 5.8 18 PDB header:glycoprotein Chain: A: PDB Molecule:xenavidin; PDBTitle: crystal structure of xenavidin 59 c3iyoA_ not modelled 5.7 15 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: cryo-em model of virion-sized hev virion-sized capsid 60 c2dafA_ not modelled 5.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flj35834 protein; PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834 61 c2yh5A_ not modelled 5.7 3 PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc 62 c2elpA_ not modelled 5.6 26 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 63 c3nqhA_ not modelled 5.6 20 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase; PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution 64 c3cw4A_ not modelled 5.5 17 PDB header:transferase Chain: A: PDB Molecule:polymerase basic protein 2; PDBTitle: large c-terminal domain of influenza a virus rna-dependent polymerase2 pb2 65 d2rh3a1 not modelled 5.5 40 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VirC2-like 66 d1s6la1 not modelled 5.4 44 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 67 d1stma_ not modelled 5.4 38 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Satellite viruses Family:Satellite viruses 68 d1z84a1 not modelled 5.3 33 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 69 d1goia3 not modelled 5.2 27 Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain 70 c1e0aB_ not modelled 5.2 15 PDB header:signalling protein Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase 71 c3fm2A_ not modelled 5.1 9 PDB header:heme-binding protein Chain: A: PDB Molecule:uncharacterized protein, distantly related to a heme PDBTitle: crystal structure of a putative heme-binding protein (ava_4353) from2 anabaena variabilis atcc 29413 at 1.80 a resolution 72 d2ddha2 not modelled 5.1 17 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains 73 c3ew2A_ not modelled 5.1 14 PDB header:unknown function Chain: A: PDB Molecule:rhizavidin; PDBTitle: crystal structure of rhizavidin-biotin complex 74 c2c1sA_ not modelled 5.1 9 PDB header:biotin binding protein Chain: A: PDB Molecule:biotin binding protein a; PDBTitle: x-ray structure of biotin binding protein from chicken 75 d1es0a2 not modelled 5.0 29 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain