Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	L	Y	I	Q	I	I	V	V	A	C	L	T	G	M	T	S	L	L	A	H	R	S	A	A	V	F	H	D	G	I	R	P	I	L	P	Q	L	I	E	G	Y	M	N	R	R	E	A	G	S	I	A	F	G	L	S	I	G	F
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	A	S	V	G	I	S	F	T	L	K	T	G	L	L	N	A	W	L	L	F	L	P	T	D	I	L	G	V	L	A	I	N	S	L	M	A	F	G	L	G	A	I	W	G	V	L	I	L	T	C	L	L	P	V	N	Q	L	L	T
Secondary structure
SS confidence
Disorder								?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	L	P	V	D	V	L	G	S	L	G	E	L	S	S	P	V	V	S	A	F	A	L	F	P	L	V	A	I	F	Y	Q	F	G	W	K	Q	S	L	I	A	A	V	V	V	L	M	T	R	V	V	V	V	R	Y	F	P	H	L	N
Secondary structure
SS confidence
Disorder														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	E	S	I	E	I	F	I	G	M	V	M	L	L	G	I	A	I	T	H	D	L	R	H	R	D	E	N	D	I	D	A	S	G	L	S	V	F	E	E	R	T	S	R	I	I	K	N	L	P	Y	I	A	I	V	G	A	L	I	A
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	V	A	S	M	K	I	F	A	G	S	E	V	S	I	F	T	L	E	K	A	Y	S	A	G	V	T	P	E	Q	S	Q	T	L	I	N	Q	A	A	L	A	E	F	M	R	G	L	G	F	V	P	L	I	A	T	T	A	L	A	T
Secondary structure
SS confidence
Disorder														?							?		?	?	?	?	?	?	?	?	?	?	?	?	?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	V	Y	A	V	A	G	F	T	F	V	Y	A	V	D	Y	L	S	P	N	P	M	V	A	A	V	L	G	A	V	V	I	S	A	E	V	L	L	L	R	S	I	G	K	W	L	G	R	Y	P	S	V	R	N	A	S	D	N	I	R
Secondary structure
SS confidence
Disorder		?																																													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		N	A	M	N	M	L	M	E	V	A	L	L	V	G	S	I	F	A	A	I	K	M	A	G	Y	T	G	F	S	I	A	V	A	I	Y	F	L	N	E	S	L	G	R	P	V	Q	K	M	A	A	P	V	V	A	V	M	I	T	G	I
Secondary structure
SS confidence
Disorder																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.
Sequence		L	L	N	V	L	Y	W	L	G	L	F	V	P	A
Secondary structure
SS confidence
Disorder										?	?		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ww9 chain B Region: 43 - 62 Aligned: 20 Modelled: 20 Confidence: 32.7% Identity: 30% PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome Phyre2 PDB 2jx0 chain A Region: 336 - 369 Aligned: 33 Modelled: 34 Confidence: 29.5% Identity: 15% PDB header:cell adhesion, signaling protein Chain: A: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: the paxillin-binding domain (pbd) of g protein coupled2 receptor (gpcr)-kinase (grk) interacting protein 1 (git1) Phyre2 PDB 1y9i chain A Region: 293 - 322 Aligned: 29 Modelled: 30 Confidence: 26.6% Identity: 28% Fold: YutG-like Superfamily: YutG-like Family: YutG-like Phyre2 PDB 1rfz chain A Region: 293 - 322 Aligned: 29 Modelled: 30 Confidence: 26.1% Identity: 28% Fold: YutG-like Superfamily: YutG-like Family: YutG-like Phyre2 PDB 3thg chain A Region: 115 - 132 Aligned: 18 Modelled: 18 Confidence: 20.5% Identity: 17% PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain Phyre2 PDB 2vy2 chain A Region: 142 - 155 Aligned: 14 Modelled: 14 Confidence: 18.8% Identity: 43% PDB header:transcription Chain: A: PDB Molecule:protein leafy; PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter Phyre2 PDB 2b99 chain A Region: 204 - 233 Aligned: 30 Modelled: 30 Confidence: 17.6% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor Phyre2 PDB 3rlb chain A Region: 141 - 171 Aligned: 31 Modelled: 31 Confidence: 16.5% Identity: 13% PDB header:thiamine-binding protein Chain: A: PDB Molecule:thit; PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter Phyre2 PDB 3dh4 chain A Region: 56 - 248 Aligned: 192 Modelled: 193 Confidence: 16.3% Identity: 9% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Phyre2 PDB 1qgt chain A Region: 116 - 133 Aligned: 18 Modelled: 18 Confidence: 15.8% Identity: 39% Fold: Hepatitis B viral capsid (hbcag) Superfamily: Hepatitis B viral capsid (hbcag) Family: Hepatitis B viral capsid (hbcag) Phyre2 PDB 1o82 chain A Region: 64 - 77 Aligned: 14 Modelled: 14 Confidence: 15.4% Identity: 29% Fold: Saposin-like Superfamily: Bacteriocin AS-48 Family: Bacteriocin AS-48 Phyre2 PDB 2kbc chain B Region: 351 - 366 Aligned: 16 Modelled: 16 Confidence: 15.1% Identity: 31% PDB header:hormone Chain: B: PDB Molecule:insl5_b-chain; PDBTitle: solution structure of human insulin-like peptide 5 (insl5) Phyre2 PDB 1zs3 chain A domain 1 Region: 207 - 232 Aligned: 26 Modelled: 26 Confidence: 14.6% Identity: 4% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2xq2 chain A Region: 56 - 239 Aligned: 183 Modelled: 184 Confidence: 14.5% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Phyre2 PDB 1ufy chain A Region: 142 - 157 Aligned: 15 Modelled: 16 Confidence: 14.5% Identity: 33% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: Chorismate mutase Phyre2 PDB 2o01 chain I Region: 143 - 153 Aligned: 11 Modelled: 11 Confidence: 14.2% Identity: 55% PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution Phyre2 PDB 3lw5 chain I Region: 143 - 153 Aligned: 11 Modelled: 11 Confidence: 14.2% Identity: 55% PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: improved model of plant photosystem i Phyre2 PDB 2wse chain I Region: 143 - 153 Aligned: 11 Modelled: 11 Confidence: 14.2% Identity: 55% PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: improved model of plant photosystem i Phyre2 PDB 2l81 chain A Region: 347 - 370 Aligned: 24 Modelled: 24 Confidence: 14.1% Identity: 13% PDB header:cell adhesion Chain: A: PDB Molecule:enhancer of filamentation 1; PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a Phyre2 PDB 2hjq chain A domain 2 Region: 27 - 38 Aligned: 12 Modelled: 12 Confidence: 13.6% Identity: 25% Fold: GINS/PriA/YqbF domain Superfamily: PriA/YqbF domain Family: YqbF N-terminal domain-like Phyre2 1 c2ww9B_ 2 c2jx0A_ 3 d1y9ia_ 4 d1rfza_ 5 c3thgA_ 6 c2vy2A_ 7 c2b99A_ 8 c3rlbA_ 9 c3dh4A_ 10 d1qgta_ 11 d1o82a_ 12 c2kbcB_ 13 d1zs3a1 14 c2xq2A_ 15 d1ufya_ 16 c2o01I_ 17 c3lw5I_ 18 c2wseI_ 19 c2l81A_ 20 d2hjqa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ww9B_ 32.7 30 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 2 c2jx0A_ 29.5 15 PDB header:cell adhesion, signaling protein Chain: A: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: the paxillin-binding domain (pbd) of g protein coupled2 receptor (gpcr)-kinase (grk) interacting protein 1 (git1) 3 d1y9ia_ 26.6 28 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 4 d1rfza_ 26.1 28 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 5 c3thgA_ 20.5 17 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 6 c2vy2A_ 18.8 43 PDB header:transcription Chain: A: PDB Molecule:protein leafy; PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter 7 c2b99A_ 17.6 23 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor 8 c3rlbA_ 16.5 13 PDB header:thiamine-binding protein Chain: A: PDB Molecule:thit; PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter 9 c3dh4A_ 16.3 9 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 10 d1qgta_ 15.8 39 Fold:Hepatitis B viral capsid (hbcag) Superfamily:Hepatitis B viral capsid (hbcag) Family:Hepatitis B viral capsid (hbcag) 11 d1o82a_ 15.4 29 Fold:Saposin-like Superfamily:Bacteriocin AS-48 Family:Bacteriocin AS-48 12 c2kbcB_ 15.1 31 PDB header:hormone Chain: B: PDB Molecule:insl5_b-chain; PDBTitle: solution structure of human insulin-like peptide 5 (insl5) 13 d1zs3a1 14.6 4 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 14 c2xq2A_ 14.5 13 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 15 d1ufya_ 14.5 33 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 16 c2o01I_ 14.2 55 PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 17 c3lw5I_ 14.2 55 PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: improved model of plant photosystem i 18 c2wseI_ 14.2 55 PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: improved model of plant photosystem i 19 c2l81A_ 14.1 13 PDB header:cell adhesion Chain: A: PDB Molecule:enhancer of filamentation 1; PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a 20 d2hjqa2 13.6 25 Fold:GINS/PriA/YqbF domain Superfamily:PriA/YqbF domain Family:YqbF N-terminal domain-like 21 c1unuB_ not modelled 13.5 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 22 c1unuA_ not modelled 13.5 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 23 d1xmec1 not modelled 13.3 26 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 24 d1xhoa_ not modelled 13.1 43 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 25 c1uo3B_ not modelled 13.0 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 26 c2cceA_ not modelled 12.5 23 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 27 c2cceB_ not modelled 12.5 23 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 28 c2ccfA_ not modelled 12.5 23 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s 29 c2rrhA_ not modelled 12.2 36 PDB header:hormone Chain: A: PDB Molecule:vip peptides; PDBTitle: nmr structure of vasoactive intestinal peptide in methanol 30 c2v8wA_ not modelled 11.8 33 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e; PDBTitle: crystallographic and mass spectrometric characterisation of2 eif4e with n7-cap derivatives 31 d1r0ka1 not modelled 11.7 16 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 32 c2la2A_ not modelled 11.7 12 PDB header:antimicrobial protein Chain: A: PDB Molecule:cecropin; PDBTitle: solution structure of papiliocin isolated from the swallowtail2 butterfly, papilio xuthus 33 c2ky5A_ not modelled 11.3 29 PDB header:cell adhesion Chain: A: PDB Molecule:platelet endothelial cell adhesion molecule; PDBTitle: solution structure of the pecam-1 cytoplasmic tail with dpc 34 c1gcmA_ not modelled 11.0 23 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 35 c1piqA_ not modelled 10.8 23 PDB header:dna binding protein Chain: A: PDB Molecule:protein (general control protein gcn4-piq); PDBTitle: crystal structure of gcn4-piq, a trimeric coiled coil with buried2 polar residues 36 c1ij1C_ not modelled 10.8 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 37 c1ij1B_ not modelled 10.8 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 38 c1ij1A_ not modelled 10.8 19 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 39 d2j9ga2 not modelled 10.8 22 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 40 d2pyqa1 not modelled 10.7 24 Fold:Jann4075-like Superfamily:Jann4075-like Family:Jann4075-like 41 c1z23A_ not modelled 10.7 26 PDB header:cell adhesion Chain: A: PDB Molecule:crk-associated substrate; PDBTitle: the serine-rich domain from crk-associated substrate2 (p130cas) 42 c2q7cC_ not modelled 10.7 23 PDB header:viral protein Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and PDBTitle: crystal structure of iqn17 43 c2npsA_ not modelled 10.5 12 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 4; PDBTitle: crystal structure of the early endosomal snare complex 44 c2affB_ not modelled 10.4 29 PDB header:cell cycle Chain: B: PDB Molecule:mki67 fha domain interacting nucleolar phosphoprotein; PDBTitle: the solution structure of the ki67fha/hnifk(226-269)3p complex 45 c1gcmB_ not modelled 10.4 23 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 46 c3aqpB_ not modelled 10.4 20 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 47 d1zy9a2 not modelled 10.3 33 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:YicI catalytic domain-like 48 c1xhoB_ not modelled 10.3 43 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:chorismate mutase; PDBTitle: chorismate mutase from clostridium thermocellum cth-682 49 c1uo5B_ not modelled 10.2 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 50 c1uo5A_ not modelled 10.2 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 51 c2wpzA_ not modelled 10.2 19 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 52 d1q0qa1 not modelled 10.1 6 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 53 c1gcmC_ not modelled 10.0 23 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 54 c2jo1A_ not modelled 9.9 24 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 55 c1gclD_ not modelled 9.9 27 PDB header:leucine zipper Chain: D: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 56 c1gclA_ not modelled 9.9 27 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 57 c1gclC_ not modelled 9.9 27 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 58 c1gclB_ not modelled 9.9 27 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 59 c3iz6T_ not modelled 9.9 17 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 60 c2d2pA_ not modelled 9.8 36 PDB header:hormone/growth factor Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: the solution structure of micelle-bound peptide 61 c1untA_ not modelled 9.7 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 62 c2wpzB_ not modelled 9.7 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 63 c1t0oA_ not modelled 9.6 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose 64 c1unxA_ not modelled 9.6 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 65 c3a23A_ not modelled 9.5 13 PDB header:hydrolase Chain: A: PDB Molecule:putative secreted alpha-galactosidase; PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose 66 c1unwB_ not modelled 9.4 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 67 c1uo2A_ not modelled 9.4 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 68 c1w5iA_ not modelled 9.4 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 69 c2wpzC_ not modelled 9.4 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 70 c1untB_ not modelled 9.3 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 71 c2voyG_ not modelled 9.3 17 PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 72 d2cs0a1 not modelled 9.2 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 73 c3kinA_ not modelled 9.2 29 PDB header:motor protein Chain: A: PDB Molecule:kinesin heavy chain; PDBTitle: kinesin (dimeric) from rattus norvegicus 74 c2kncB_ not modelled 9.2 27 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 75 c2jgcA_ not modelled 9.2 28 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e type PDBTitle: structure of the human eif4e homologous protein, 4ehp2 without ligand bound 76 c3lrmB_ not modelled 9.0 20 PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase 1; PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose 77 d2bz1a1 not modelled 9.0 18 Fold:RibA-like Superfamily:RibA-like Family:RibA-like 78 c1uo2B_ not modelled 9.0 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 79 c1w5iB_ not modelled 9.0 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 80 c1rb1C_ not modelled 9.0 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 81 c3k7zC_ not modelled 9.0 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 82 c1ij0C_ not modelled 8.9 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 83 c1ij0A_ not modelled 8.9 19 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 84 c1ij0B_ not modelled 8.9 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 85 d1chma1 not modelled 8.9 16 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 86 c2f7nA_ not modelled 8.9 12 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: structure of d. radiodurans dps-1 87 d1xrda1 not modelled 8.9 27 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 88 c1rb4C_ not modelled 8.8 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 89 d1w2fa_ not modelled 8.7 21 Fold:SAICAR synthase-like Superfamily:SAICAR synthase-like Family:Inositol polyphosphate kinase (IPK) 90 c1unxB_ not modelled 8.7 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 91 c1zy9A_ not modelled 8.7 33 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution 92 c1swiB_ not modelled 8.6 19 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 93 c1rb4A_ not modelled 8.6 19 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 94 c1swiC_ not modelled 8.6 19 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 95 c1l2aD_ not modelled 8.6 43 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 96 d1l1ya_ not modelled 8.6 43 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 97 c2ysxA_ not modelled 8.5 25 PDB header:signaling protein Chain: A: PDB Molecule:signaling inositol polyphosphate phosphatase PDBTitle: solution structure of the human ship sh2 domain 98 c3nfqA_ not modelled 8.4 22 PDB header:transcription Chain: A: PDB Molecule:transcription factor iws1; PDBTitle: crystal structure of the conserved central domain of yeast spn1/iws1 99 c1l6nA_ not modelled 8.4 21 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0