Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33195
DateThu Jan 5 11:51:15 GMT 2012
Unique Job ID7043e336a2c025a2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1wyub1
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
Confidence and coverage
Confidence:100.0% Coverage: 47%
450 residues ( 47% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
866 residues ( 90%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQIVPKDIQLATPPQVGA
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Disorder  ???????????


































?????????????
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   .........70.........80.........90.........100.........110.........120
Sequence  PATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNMLENPGWYTAYTPYQPEVS
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   .........130.........140.........150.........160.........170.........180
Sequence  QGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASDVH
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???




























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   .........190.........200.........210.........220.........230.........240
Sequence  PQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQQVGTTGEIHDYTALISELKSRK
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??
































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   .........250.........260.........270.........280.........290.........300
Sequence  IVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGR
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   .........310.........320.........330.........340.........350.........360
Sequence  IIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVYHGPVGLKRI
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Disorder  ?
??
??













?????????





























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   .........370.........380.........390.........400.........410.........420
Sequence  ANRIHRLTDILAAGLQQKGLKLRHAHYFDTLCVEVADKAGVLTRAEAAEINLRSDILNAV
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?





















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   .........430.........440.........450.........460.........470.........480
Sequence  GITLDETTTRENVMQLFNVLLGDNHGLDIDTLDKDVAHDSRSIQPAMLRDDEILTHPVFN
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Disorder 



















??????




????

???????
??????????

?
?
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   .........490.........500.........510.........520.........530.........540
Sequence  RYHSETEMMRYMHSLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPPE
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Disorder  ?




















?




































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   .........550.........560.........570.........580.........590.........600
Sequence  QAEGYQQMIAQLADWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLI
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   .........610.........620.........630.........640.........650.........660
Sequence  PASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVY
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   .........670.........680.........690.........700.........710.........720
Sequence  EETIREVCEVVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPG
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   .........730.........740.........750.........760.........770.........780
Sequence  MGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKK
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?
?????
































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   .........790.........800.........810.........820.........830.........840
Sequence  ASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDY
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?

?












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   .........850.........860.........870.........880.........890.........900
Sequence  GFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNA
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???????????




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   .........910.........920.........930.........940.........950.......
Sequence  PHIQSELVAEWAHPYSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ
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Disorder 





??










































??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1wyu chain B domain 1

3D model

Region: 439 - 945
Aligned: 450
Modelled: 474
Confidence: 100.0%
Identity: 42%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Glycine dehydrogenase subunits (GDC-P)

Phyre2

PDB 1wyu chain A domain 1

3D model

Region: 17 - 440
Aligned: 418
Modelled: 424
Confidence: 100.0%
Identity: 31%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Glycine dehydrogenase subunits (GDC-P)

Phyre2

PDB 1ax4 chain A

3D model

Region: 547 - 899
Aligned: 344
Modelled: 351
Confidence: 100.0%
Identity: 18%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Beta-eliminating lyases

Phyre2

PDB 3bc8 chain A domain 1

3D model

Region: 484 - 884
Aligned: 370
Modelled: 385
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: SepSecS-like

Phyre2

PDB 3hl2 chain D

3D model

Region: 484 - 884
Aligned: 371
Modelled: 381
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase;
PDBTitle: the crystal structure of the human sepsecs-trnasec complex

Phyre2

PDB 3maf chain B

3D model

Region: 516 - 886
Aligned: 349
Modelled: 366
Confidence: 100.0%
Identity: 16%
PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)

Phyre2

PDB 1pmm chain A

3D model

Region: 484 - 886
Aligned: 386
Modelled: 403
Confidence: 100.0%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Pyridoxal-dependent decarboxylase

Phyre2

PDB 3hbx chain B

3D model

Region: 484 - 886
Aligned: 381
Modelled: 401
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana

Phyre2

PDB 3f9t chain B

3D model

Region: 484 - 879
Aligned: 367
Modelled: 396
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution

Phyre2

PDB 3mc6 chain C

3D model

Region: 484 - 881
Aligned: 379
Modelled: 395
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1

Phyre2

PDB 1c7g chain A

3D model

Region: 547 - 899
Aligned: 324
Modelled: 353
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Beta-eliminating lyases

Phyre2

PDB 1eji chain A

3D model

Region: 485 - 887
Aligned: 368
Modelled: 403
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2hzp chain A

3D model

Region: 24 - 440
Aligned: 399
Modelled: 409
Confidence: 100.0%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase

Phyre2

PDB 2jis chain A

3D model

Region: 532 - 882
Aligned: 341
Modelled: 344
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.

Phyre2

PDB 1bj4 chain A

3D model

Region: 485 - 887
Aligned: 369
Modelled: 403
Confidence: 99.9%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2z67 chain A domain 1

3D model

Region: 484 - 878
Aligned: 359
Modelled: 366
Confidence: 99.9%
Identity: 12%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: SepSecS-like

Phyre2

PDB 1js3 chain A

3D model

Region: 464 - 882
Aligned: 399
Modelled: 419
Confidence: 99.9%
Identity: 12%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Pyridoxal-dependent decarboxylase

Phyre2

PDB 3e9k chain A

3D model

Region: 23 - 440
Aligned: 400
Modelled: 410
Confidence: 99.9%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex

Phyre2

PDB 2v1p chain A domain 1

3D model

Region: 549 - 899
Aligned: 330
Modelled: 351
Confidence: 99.9%
Identity: 19%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Beta-eliminating lyases

Phyre2

PDB 2okk chain A

3D model

Region: 540 - 881
Aligned: 328
Modelled: 342
Confidence: 99.9%
Identity: 15%
PDB header:lyase
Chain: A: PDB Molecule:glutamate decarboxylase 2;
PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)

Phyre2
1

d1wyub1
2

d1wyua1
3

d1ax4a_
4

d3bc8a1
5

c3hl2D_
6

c3mafB_
7

d1pmma_
8

c3hbxB_
9

c3f9tB_
10

c3mc6C_
11

d1c7ga_
12

d1ejia_
13

c2hzpA_
14

c2jisA_
15

d1bj4a_
16

d2z67a1
17

d1js3a_
18

c3e9kA_
19

d2v1pa1
20

c2okkA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1wyub1



100.0 42 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
2d1wyua1



100.0 31 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
3d1ax4a_



100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
4d3bc8a1



100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
5c3hl2D_



100.0 17 PDB header:transferase
Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase;
PDBTitle: the crystal structure of the human sepsecs-trnasec complex
6c3mafB_



100.0 16 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
7d1pmma_



100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
8c3hbxB_



100.0 14 PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
9c3f9tB_



100.0 18 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
10c3mc6C_



100.0 14 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
11d1c7ga_



100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
12d1ejia_



100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
13c2hzpA_



100.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
14c2jisA_



100.0 15 PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
15d1bj4a_



99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
16d2z67a1



99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
17d1js3a_



99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
18c3e9kA_



99.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
19d2v1pa1



99.9 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
20c2okkA_



99.9 15 PDB header:lyase
Chain: A: PDB Molecule:glutamate decarboxylase 2;
PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
21d1rv3a_



not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
22d1jf9a_



not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
23c3ecdC_



not modelled 99.9 19 PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
24d1dfoa_



not modelled 99.9 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
25c2qmaB_



not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4-
PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus
26c2dkjB_



not modelled 99.9 21 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
27d1c4ka2



not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
28c3k40B_



not modelled 99.9 16 PDB header:lyase
Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase;
PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase
29d1kl1a_



not modelled 99.9 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30d1t3ia_



not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
31d1tpla_



not modelled 99.8 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
32d1qz9a_



not modelled 99.8 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
33d1vjoa_



not modelled 99.8 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
34c3h7fB_



not modelled 99.8 22 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
35c3caiA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
36c3n0lA_



not modelled 99.8 19 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
37c3islA_



not modelled 99.8 13 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
38c3hmuA_



not modelled 99.8 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi
39d1o69a_



not modelled 99.8 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
40d1bs0a_



not modelled 99.8 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
41d2ch1a1



not modelled 99.8 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
42d2bwna1



not modelled 99.8 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
43d1h0ca_



not modelled 99.8 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
44d1s0aa_



not modelled 99.8 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
45c3dodA_



not modelled 99.8 13 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis
46c3bcxA_



not modelled 99.8 15 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
47c2w8wA_



not modelled 99.8 14 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
48c3lv2A_



not modelled 99.8 13 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin
49c3i4jC_



not modelled 99.8 13 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
50c2dr1A_



not modelled 99.8 13 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
51d2e7ja1



not modelled 99.8 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
52c2z9wA_



not modelled 99.8 14 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
53c2yrrA_



not modelled 99.8 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class v;
PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8
54d1fc4a_



not modelled 99.8 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
55c2c7tA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
56c3nnkC_



not modelled 99.8 13 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
57d1mdoa_



not modelled 99.8 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
58c2po3B_



not modelled 99.8 16 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
59c3f0hA_



not modelled 99.8 12 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
60c3a2bA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
61c2a7vA_



not modelled 99.8 21 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: human mitochondrial serine hydroxymethyltransferase 2
62d2a7va1



not modelled 99.8 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
63c2huuA_



not modelled 99.8 17 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
64c3dr4B_



not modelled 99.8 14 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
65c3tqxA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
66c3lvmB_



not modelled 99.8 13 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
67c2r0tA_



not modelled 99.8 16 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
68d1elua_



not modelled 99.7 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
69c3ffrA_



not modelled 99.7 9 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
70c3uwcA_



not modelled 99.7 10 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
71c3hqtB_



not modelled 99.7 14 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
72d2fnua1



not modelled 99.7 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
73d1b9ha_



not modelled 99.7 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
74c3n5mD_



not modelled 99.7 15 PDB header:transferase
Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystals structure of a bacillus anthracis aminotransferase
75d1p3wa_



not modelled 99.7 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
76c3a8uX_



not modelled 99.7 17 PDB header:transferase
Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase;
PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase
77c3pj0D_



not modelled 99.7 12 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
78c3nx3A_



not modelled 99.7 9 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
79c2ogeC_



not modelled 99.7 12 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
80d2bkwa1



not modelled 99.7 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
81d1svva_



not modelled 99.7 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
82c3bv0A_



not modelled 99.7 14 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 mycobacterium tuberculosis
83c3ke3A_



not modelled 99.7 15 PDB header:transferase
Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase;
PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
84d1m32a_



not modelled 99.7 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
85d2cfba1



not modelled 99.7 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
86c2hdyA_



not modelled 99.7 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
87c2ordA_



not modelled 99.7 14 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
88c3bs8A_



not modelled 99.6 18 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis
89c3frkB_



not modelled 99.6 14 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
90c3i5tB_



not modelled 99.6 15 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131
91c3ht4B_



not modelled 99.6 21 PDB header:lyase
Chain: B: PDB Molecule:aluminum resistance protein;
PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213
92d1eg5a_



not modelled 99.6 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
93c2x3lA_



not modelled 99.6 14 PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
94c3ruyB_



not modelled 99.6 16 PDB header:transferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis
95d2byla1



not modelled 99.6 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
96d1v72a1



not modelled 99.6 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
97c2cb1A_



not modelled 99.6 18 PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
98d1m6sa_



not modelled 99.6 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
99c3fd0B_



not modelled 99.6 20 PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution
100c1oatB_



not modelled 99.6 16 PDB header:aminotransferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase
101c3nysA_



not modelled 99.6 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
102c3nuiA_



not modelled 99.6 16 PDB header:transferase
Chain: A: PDB Molecule:pyruvate transaminase;
PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17
103d2c0ra1



not modelled 99.6 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
104c2eh6A_



not modelled 99.6 17 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
105c2pb2B_



not modelled 99.6 13 PDB header:transferase
Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase;
PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding
106c3l44A_



not modelled 99.6 19 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1;
PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase
107d1z7da1



not modelled 99.6 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
108d2gsaa_



not modelled 99.6 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
109c1c4kA_



not modelled 99.6 16 PDB header:lyase
Chain: A: PDB Molecule:protein (ornithine decarboxylase);
PDBTitle: ornithine decarboxylase mutant (gly121tyr)
110c2zsmA_



not modelled 99.6 16 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form
111d1w23a_



not modelled 99.6 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
112d1lc5a_



not modelled 99.6 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
113c3dxvA_



not modelled 99.6 14 PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae
114d1qgna_



not modelled 99.6 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
115c2fyfB_



not modelled 99.6 11 PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
116d1zoda1



not modelled 99.5 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
117d1iuga_



not modelled 99.5 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
118d1sffa_



not modelled 99.5 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
119d1ibja_



not modelled 99.5 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
120c1ibjC_



not modelled 99.5 18 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0