Phyre 2 alignment of P75906 with c3civA

Job Description P75906
Confidence 51.48% Date Thu Jan 5 12:15:53 GMT 2012

Rank 269 Aligned Residues 259

% Identity 14% Template c3civA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	N	I	D	V	L	I	Q	R	V	K	D	M	Q	I	S	T	V	Y	L	Q	A	F	A	D	P	D	G	D	G	L	V	K	E	V	W	F	P	N	R	L	L	P	M	K	A	D	I	F	S	R	V	A	W	Q	L	R	T	R	S	G	V	N	I	Y	A	W	M	P	V	L	S	W	D	L	D	P	T	L	T
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence	D	E	A	R	A	S	M	R	A	L	A	E	Q	P	F	N	W	V	T	L	A	F	A	G	L	M	E	.	.	.	H	P	G	D	P	A	I	A	Y	G	P	P	V	T	V	S	D	D	E	I	A	S	M	A	E	L	A	H	A	L	G	L	K	V	C	L	K	P	T	V	N	C	R	D	G	T	W	R	G	E
Template Known Secondary structure													S	S		S											S	.	.	.	S	T	T					B		S	T	T	T	B																T	T												T	T				G	G	G
Template Predicted Secondary structure																												.	.	.
Template SS confidence
	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.

	414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	V	K	Y	L	P	T	G	E	K	K	A	Q	I	H	P	E	Q	Y	H	R	L	S	P	F	D	D	R	V	R	A	Q	V	G	M	L	Y	E	D	L	A	G	H	A	A	F	D	G	I	L	F	H	D	D	A	L	L	S	D	Y	E	D	A	S	A	P	A	I	T	A	Y	Q	Q	A	G	F	S	G	S	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.
Template Sequence	I	R	F	E	K	E	H	G	P	D	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	E	A	W	F	G	S	Y	S	D	M	M	A	H	Y	A	H	V	A	K	R	T	G	C	E	M	F	C	V	G	C	E	M	T	T	A	E	P	H	E	A	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	B	S			T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B																						T	T		S							S		T	T	T	T	T				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
	107	.	.	110	.	.	.	.	.	.	.	.																	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	E	I	R	Q	N	P	E	Q	F	K	Q	W	A	R	F	K	S	R	A	L	T	D	F	T	L	E	L	S	A	R	V	K	A	I	R	G	P	H	I	K	T	A	R	N	I	F	A	L	P	V	I	Q	P	E	S	E	A	W	F	A	Q	N	Y	A	D	F	L	K	S	Y	D	W	T	A	I	M	A	M	P
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	W	R	E	T	I	A	R	V	R	T	E	Y	D	G	L	V	T	Y	N	C	N	H	G	R	E	E	H	V	R	F	W	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	V	D	L	I	S	S	S	A	Y	Y
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S								T	T		T	T	T		S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.														.	.	.	.	.	.	.	200	.	.	.	.

	574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.												.	.	.	.	.	.	630	.	.	.	.	.	.	.					.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence	Y	L	E	G	V	A	E	K	S	A	D	Q	W	L	I	Q	L	T	N	Q	I	K	N	I	P	Q	A	K	D	K	S	I	L	E	L	Q	A	Q	N	W	Q	K	N	G	Q	H	Q	A	I	S	.	.	.	.	.	.	.	.	.	.	.	S	Q	Q	L	A	H	W	M	S	L	L	Q	L	N	.	.	.	.	G
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence						.	.															.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation						.	.															.	.	.	.	.
Template Sequence	P	I	D	R	W	.	.	R	D	R	V	P	V	L	R	E	V	A	E	A	H	.	.	.	.	.	E	K	P	L	F	F	M	E	V	G	C	P	S	R	S	G	S	G	A	C	P	W	D	Y	R	H	P	G	A	V	C	L	D	E	Q	A	R	F	Y	E	A	M	F	A	A	M	P	D	E	P	W	F	K	G
Template Known Secondary structure		G	G	G		.	.															.	.	.	.	.	T												S	B	T	T	G	G	G	S	T	T		T	T					B																S				T	T
Template Predicted Secondary structure						.	.															.	.	.	.	.
Template SS confidence
	205	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.						.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

	639	640	.	.	.	.	.	.	.	.	.													650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	K	N	Y	G	Y	Y	P	D	N	F	.	.	.	.	.	.	.	.	.	.	.	.	L	H	N	Q	P	E	I	D	L	I	R	P	E	F	S
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	M	L	W	E	W	P	W	K	L	Y	P	R	E	A	A	S	E	D	G	S	Y	C	I	Y	G	K	P	A	E	D	V	V	A	R	A	F	S
Template Known Secondary structure								S	S				G	G	G	G	G	G			S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
	278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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