Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	E	G	Q	N	R	K	T	S	S	L	S	I	L	A	I	A	G	V	E	P	Y	Q	E	K	P	G	E	E	Y	M	N	E	A	Q	L	A	H	F	R	R	I	L	E	A	W	R	N	Q	L	R	D	E	V	D	R	T	V	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	M	Q	D	E	A	A	N	F	P	D	P	V	D	R	A	A	Q	E	E	E	F	S	L	E	L	R	N	R	D	R	E	R	K	L	I	K	K	I	E	K	T	L	K	K	V	E	D	E	D	F	G	Y	C	E	S	C	G	V	E
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Sequence		I	G	I	R	R	L	E	A	R	P	T	A	D	L	C	I	D	C	K	T	L	A	E	I	R	E	K	Q	M	A	G
Secondary structure
SS confidence
Disorder																											?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tjl chain D Region: 7 - 151 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 100% PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli Phyre2 PDB 2kq9 chain A Region: 31 - 141 Aligned: 109 Modelled: 111 Confidence: 99.9% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888 Phyre2 PDB 1tjl chain A domain 1 Region: 7 - 110 Aligned: 104 Modelled: 104 Confidence: 99.9% Identity: 100% Fold: Long alpha-hairpin Superfamily: DnaK suppressor protein DksA, alpha-hairpin domain Family: DnaK suppressor protein DksA, alpha-hairpin domain Phyre2 PDB 2kgo chain A Region: 85 - 151 Aligned: 67 Modelled: 67 Confidence: 99.7% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 Phyre2 PDB 1tjl chain A domain 2 Region: 111 - 151 Aligned: 41 Modelled: 41 Confidence: 99.5% Identity: 100% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Prokaryotic DksA/TraR C4-type zinc finger Phyre2 PDB 3mhs chain E Region: 110 - 123 Aligned: 14 Modelled: 14 Confidence: 77.0% Identity: 29% PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde Phyre2 PDB 1dvb chain A Region: 48 - 118 Aligned: 71 Modelled: 71 Confidence: 66.4% Identity: 13% PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin Phyre2 PDB 2gvi chain A Region: 113 - 140 Aligned: 28 Modelled: 28 Confidence: 66.4% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution Phyre2 PDB 3d00 chain A Region: 113 - 140 Aligned: 22 Modelled: 28 Confidence: 60.7% Identity: 27% PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution Phyre2 PDB 2hr5 chain B Region: 49 - 118 Aligned: 70 Modelled: 70 Confidence: 58.6% Identity: 14% PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form Phyre2 PDB 1x4k chain A domain 1 Region: 113 - 142 Aligned: 30 Modelled: 30 Confidence: 50.1% Identity: 20% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1xpa chain A domain 2 Region: 110 - 120 Aligned: 11 Modelled: 11 Confidence: 42.5% Identity: 55% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain Phyre2 PDB 2cur chain A domain 1 Region: 113 - 138 Aligned: 26 Modelled: 26 Confidence: 41.9% Identity: 27% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1kjn chain A Region: 99 - 117 Aligned: 19 Modelled: 19 Confidence: 36.9% Identity: 11% Fold: Hypothetical protein MTH777 (MT0777) Superfamily: Hypothetical protein MTH777 (MT0777) Family: Hypothetical protein MTH777 (MT0777) Phyre2 PDB 3u1d chain A Region: 8 - 49 Aligned: 42 Modelled: 42 Confidence: 33.0% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei. Phyre2 PDB 1grj chain A Region: 31 - 102 Aligned: 68 Modelled: 72 Confidence: 32.9% Identity: 13% PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli Phyre2 PDB 1wyh chain A domain 1 Region: 113 - 142 Aligned: 30 Modelled: 30 Confidence: 30.7% Identity: 23% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1yuz chain B Region: 48 - 118 Aligned: 71 Modelled: 71 Confidence: 28.6% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin Phyre2 PDB 2f5q chain A Region: 111 - 139 Aligned: 28 Modelled: 29 Confidence: 24.7% Identity: 29% PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 Phyre2 PDB 1j2o chain A domain 1 Region: 109 - 122 Aligned: 14 Modelled: 14 Confidence: 23.7% Identity: 29% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 1 c1tjlD_ 2 c2kq9A_ 3 d1tjla1 4 c2kgoA_ 5 d1tjla2 6 c3mhsE_ 7 c1dvbA_ 8 c2gviA_ 9 c3d00A_ 10 c2hr5B_ 11 d1x4ka1 12 d1xpaa2 13 d2cura1 14 d1kjna_ 15 c3u1dA_ 16 c1grjA_ 17 d1wyha1 18 c1yuzB_ 19 c2f5qA_ 20 d1j2oa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1tjlD_ 100.0 100 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 2 c2kq9A_ 99.9 21 PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888 3 d1tjla1 99.9 100 Fold:Long alpha-hairpin Superfamily:DnaK suppressor protein DksA, alpha-hairpin domain Family:DnaK suppressor protein DksA, alpha-hairpin domain 4 c2kgoA_ 99.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 5 d1tjla2 99.5 100 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Prokaryotic DksA/TraR C4-type zinc finger 6 c3mhsE_ 77.0 29 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 7 c1dvbA_ 66.4 13 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 8 c2gviA_ 66.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution 9 c3d00A_ 60.7 27 PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution 10 c2hr5B_ 58.6 14 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 11 d1x4ka1 50.1 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 12 d1xpaa2 42.5 55 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain 13 d2cura1 41.9 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 14 d1kjna_ 36.9 11 Fold:Hypothetical protein MTH777 (MT0777) Superfamily:Hypothetical protein MTH777 (MT0777) Family:Hypothetical protein MTH777 (MT0777) 15 c3u1dA_ 33.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei. 16 c1grjA_ 32.9 13 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 17 d1wyha1 30.7 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 18 c1yuzB_ 28.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 19 c2f5qA_ 24.7 29 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 20 d1j2oa1 23.7 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 21 d2czra1 not modelled 22.9 50 Fold:Restriction endonuclease-like Superfamily:TBP-interacting protein-like Family:TBP-interacting protein-like 22 c2opfA_ not modelled 22.7 32 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 23 d1lpba2 not modelled 22.7 27 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 24 c1k82D_ not modelled 22.6 29 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 25 d1weoa_ not modelled 21.9 60 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 26 d1nf4a_ not modelled 21.3 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 27 c2d8zA_ not modelled 21.2 23 PDB header:signaling protein, structural protein Chain: A: PDB Molecule:four and a half lim domains 2; PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2) 28 c2gb5B_ not modelled 21.2 35 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 29 d1rutx3 not modelled 20.5 45 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 30 c1ee8A_ not modelled 20.2 29 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 31 c2l3kA_ not modelled 19.9 27 PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1; PDBTitle: solution structure of lmo2(lim2)-ldb1(lid) 32 c2darA_ not modelled 19.8 17 PDB header:metal binding protein Chain: A: PDB Molecule:pdz and lim domain protein 5; PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein 33 c1wjvA_ not modelled 19.8 31 PDB header:dna binding protein Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar; PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar 34 c3a44D_ not modelled 19.6 22 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 35 d1x63a2 not modelled 19.4 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 36 c1nnjA_ not modelled 18.7 32 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 37 c1j2oA_ not modelled 18.5 23 PDB header:metal binding protein Chain: A: PDB Molecule:fusion of rhombotin-2 and lim domain-binding PDBTitle: structure of flin2, a complex containing the n-terminal lim2 domain of lmo2 and ldb1-lid 38 c2qgpA_ not modelled 18.5 27 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 39 d2cupa3 not modelled 18.1 44 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 40 d2ak3a2 not modelled 17.9 20 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 41 c3cm6A_ not modelled 17.4 31 PDB header:hydrolase, apoptosis Chain: A: PDB Molecule:cell death-related nuclease 4; PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er 42 d1rutx1 not modelled 17.1 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 43 d1e4va2 not modelled 16.9 30 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 44 c1x4lA_ not modelled 16.6 25 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2 45 c2d8xA_ not modelled 16.5 17 PDB header:structural protein, cell cycle Chain: A: PDB Molecule:protein pinch; PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch) 46 d2dara2 not modelled 16.4 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 47 c1d4uA_ not modelled 16.0 33 PDB header:dna binding protein Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd); PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies 48 c2cuqA_ not modelled 16.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:four and a half lim domains 3; PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2 49 c1wyhA_ not modelled 15.2 24 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 2; PDBTitle: solution structure of the lim domain from human skeletal2 muscle lim-protein 2 50 c2etnA_ not modelled 15.1 18 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 51 c2i61A_ not modelled 14.8 33 PDB header:toxin Chain: A: PDB Molecule:insect toxin 2; PDBTitle: depressant anti-insect neurotoxin, lqhit2 from leiurus2 quinquestriatus hebraeus 52 d1ee8a3 not modelled 14.4 28 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 53 c2o03A_ not modelled 14.3 57 PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator 54 d1x4la2 not modelled 14.2 44 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 55 c2curA_ not modelled 13.9 23 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of skeletal muscle lim-protein 1 56 d1kx5b_ not modelled 13.8 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 57 d1zina2 not modelled 13.8 56 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 58 c3h0gL_ not modelled 13.7 29 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 59 c2xigA_ not modelled 13.6 33 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 60 d2cuqa1 not modelled 13.6 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 61 c2a20A_ not modelled 13.6 29 PDB header:metal binding protein Chain: A: PDB Molecule:regulating synaptic membrane exocytosis protein PDBTitle: solution structure of rim2 zinc finger domain 62 d1id3b_ not modelled 13.5 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 63 d1s3ga2 not modelled 13.3 44 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 64 d1p3ja2 not modelled 13.3 44 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 65 d1x3ha1 not modelled 13.2 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 66 d1akya2 not modelled 13.1 10 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 67 c1x63A_ not modelled 13.0 21 PDB header:contractile protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1 68 d2b3ca_ not modelled 12.6 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 69 c2fe3B_ not modelled 12.6 43 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 70 c2ko5A_ not modelled 12.5 20 PDB header:transcription Chain: A: PDB Molecule:ring finger protein z; PDBTitle: nmr solution structure of lfv-z 71 d1bboa1 not modelled 12.4 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 72 d1bmra_ not modelled 12.2 33 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 73 d1xx6a2 not modelled 12.1 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 74 c3mwmA_ not modelled 12.0 57 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 75 d1twfj_ not modelled 11.9 56 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 76 c1x4kA_ not modelled 11.8 21 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in lim-protein 3 77 c2i5oA_ not modelled 11.6 40 PDB header:transferase Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta 78 c2p4vA_ not modelled 11.5 21 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 79 d2i9ca1 not modelled 11.1 30 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:RPA1889-like 80 c1x64A_ not modelled 11.0 10 PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein 81 d1jzaa_ not modelled 11.0 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 82 c2egqA_ not modelled 10.9 24 PDB header:structural protein Chain: A: PDB Molecule:fhl1 protein; PDBTitle: solution structure of the fourth lim domain from human four2 and a half lim domains 1 83 c2a8vA_ not modelled 10.9 23 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 84 c1x61A_ not modelled 10.8 17 PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor interacting protein 6; PDBTitle: solution structure of the first lim domain of thyroid2 receptor interacting protein 6 (trip6) 85 c2k5cA_ not modelled 10.8 31 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 86 d1ef4a_ not modelled 10.6 44 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 87 c3jueA_ not modelled 10.5 15 PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1 88 d1cn2a_ not modelled 10.4 33 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 89 d2huec1 not modelled 10.4 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 90 d1a62a2 not modelled 10.4 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 91 d1vnba_ not modelled 10.3 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 92 d1nh5a_ not modelled 10.3 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 93 c1x62A_ not modelled 10.2 33 PDB header:structural protein Chain: A: PDB Molecule:c-terminal lim domain protein 1; PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1 94 d2sn3a_ not modelled 10.2 40 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 95 d2yt9a2 not modelled 10.1 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 96 d2cu8a1 not modelled 10.0 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 97 c3gn5B_ not modelled 10.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 98 c1x3hA_ not modelled 9.9 10 PDB header:metal binding protein Chain: A: PDB Molecule:leupaxin; PDBTitle: solution structure of the lim domain of human leupaxin 99 c2co8A_ not modelled 9.9 27 PDB header:metal binding protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0