Email l.a.kelley@imperial.ac.uk Description P75617 Date Thu Jan 5 12:12:48 GMT 2012 Unique Job ID 6c6d7768c1f55c96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oeya_ 77.0 37 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 2 d2o3la1 53.0 16 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 3 d1gt0d_ 50.3 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 4 c2wvrB_ 49.8 11 PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex 5 d1wgfa_ 47.1 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 6 d2hh6a1 46.6 14 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 7 c2e6oA_ 46.0 26 PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 8 c2zxxA_ 44.4 11 PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex 9 c3u2bC_ 44.3 17 PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna 10 d2lefa_ 42.8 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 11 c2eqzA_ 42.0 22 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 12 c1j3xA_ 41.5 22 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 13 d1j3xa_ 41.5 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 14 d2gzka2 40.1 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 15 c1hryA_ 40.1 26 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multid-dimensional heteronuclear-edited and-filtered nmr 16 c1hrzA_ 40.1 26 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multi-dimensional heteronuclear-edited and-filtered nmr 17 c2cs1A_ 39.3 22 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 18 d1j46a_ 39.2 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 19 c2d7lA_ 38.3 4 PDB header:gene regulation, dna binding protein Chain: A: PDB Molecule:wd repeat and hmg-box dna binding protein 1; PDBTitle: solution structure of the hmg box domain from human wd2 repeat and hmg-box dna binding protein 1 20 c2yulA_ 38.3 26 PDB header:transcription Chain: A: PDB Molecule:transcription factor sox-17; PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17 21 c1wz6A_ not modelled 37.4 22 PDB header:transcription Chain: A: PDB Molecule:hmg-box transcription factor bbx; PDBTitle: solution structure of the hmg_box domain of murine bobby2 sox homolog 22 c3fghA_ not modelled 35.7 13 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 23 c2crjA_ not modelled 33.0 26 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 24 c1hmfA_ not modelled 31.5 17 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 25 d1hmfa_ not modelled 31.5 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 26 d1jhga_ not modelled 30.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Trp repressor, TrpR 27 d1lwma_ not modelled 30.0 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 28 c2co9A_ not modelled 28.5 22 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 29 c2jvfA_ not modelled 28.2 28 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 30 d1v54m_ not modelled 28.0 18 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 31 c1qysA_ not modelled 27.7 13 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 32 d1i11a_ not modelled 27.2 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 33 c1aabA_ not modelled 27.0 22 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein; PDBTitle: nmr structure of rat hmg1 hmga fragment 34 d1aaba_ not modelled 27.0 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 35 d1k99a_ not modelled 26.0 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 36 d1ckta_ not modelled 26.0 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 37 d2o4ta1 not modelled 25.9 16 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 38 d1hsma_ not modelled 24.2 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 39 d1j3da_ not modelled 22.5 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 40 c2qguA_ not modelled 22.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 41 d1r8ja1 not modelled 22.2 13 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 42 c3cxjB_ not modelled 21.7 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 43 c3frwF_ not modelled 20.8 15 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative trp repressor protein; PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum 44 d1puza_ not modelled 20.8 16 Fold:YgfY-like Superfamily:YgfY-like Family:YgfY-like 45 c1e1hD_ not modelled 20.4 42 PDB header:hydrolase Chain: D: PDB Molecule:botulinum neurotoxin type a light chain; PDBTitle: crystal structure of recombinant botulinum neurotoxin type2 a light chain, self-inhibiting zn endopeptidase. 46 d1cc5a_ not modelled 20.0 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 47 d1v64a_ not modelled 19.2 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 48 d1gl4a1 not modelled 18.7 35 Fold:GFP-like Superfamily:GFP-like Family:Domain G2 of nidogen-1 49 d1v63a_ not modelled 18.7 9 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 50 c1x6iB_ not modelled 18.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ygfy; PDBTitle: crystal structure of ygfy from escherichia coli 51 d1sv1a_ not modelled 18.0 13 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 52 c2awyB_ not modelled 17.7 11 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemerythrin-like domain protein dcrh; PDBTitle: met-dcrh-hr 53 c2y69Z_ not modelled 17.6 19 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 54 c2l66B_ not modelled 17.1 60 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 55 c1rh1A_ not modelled 16.9 14 PDB header:antibiotic Chain: A: PDB Molecule:colicin b; PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution 56 c3lisB_ not modelled 16.9 16 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 57 c2rlwA_ not modelled 16.6 30 PDB header:toxin Chain: A: PDB Molecule:plnf; PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef 58 c1h4uA_ not modelled 16.5 35 PDB header:extracellular matrix protein Chain: A: PDB Molecule:nidogen-1; PDBTitle: domain g2 of mouse nidogen-1 59 d2je8a5 not modelled 16.1 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 60 d1vp8a_ not modelled 16.1 21 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 61 c3korD_ not modelled 16.0 19 PDB header:transcription Chain: D: PDB Molecule:possible trp repressor; PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus 62 d2al3a1 not modelled 15.7 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 63 d2akja1 not modelled 15.5 18 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 64 d1kx7a_ not modelled 14.9 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 65 c2lm4A_ not modelled 14.6 26 PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a 66 c2jr5A_ not modelled 14.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0350 protein vc_2471; PDBTitle: solution structure of upf0350 protein vc_2471. northeast2 structural genomics target vcr36 67 d1ctda_ not modelled 14.4 38 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 68 d1tlha_ not modelled 13.8 16 Fold:Anti-sigma factor AsiA Superfamily:Anti-sigma factor AsiA Family:Anti-sigma factor AsiA 69 c1r8jB_ not modelled 13.8 13 PDB header:circadian clock protein Chain: B: PDB Molecule:kaia; PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus 70 c1ojhK_ not modelled 13.7 17 PDB header:protein binding Chain: K: PDB Molecule:nbla; PDBTitle: crystal structure of nbla from pcc 7120 71 d1m47a_ not modelled 13.7 24 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 72 c2nxbB_ not modelled 13.1 13 PDB header:signaling protein Chain: B: PDB Molecule:bromodomain-containing protein 3; PDBTitle: crystal structure of human bromodomain containing protein 3 (brd3) 73 d1ojha_ not modelled 12.5 17 Fold:NblA-like Superfamily:NblA-like Family:NblA-like 74 c3lpgA_ not modelled 12.3 15 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 75 c2je8B_ not modelled 11.8 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 76 d1fcdc1 not modelled 11.6 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 77 c3d0wD_ not modelled 11.6 26 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yflh protein; PDBTitle: crystal structure of yflh protein from bacillus subtilis.2 northeast structural genomics consortium target sr326 78 c3bzjA_ not modelled 11.6 22 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 79 d1pgja1 not modelled 11.3 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 80 c2zxyA_ not modelled 11.2 22 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 81 d1ql3a_ not modelled 11.2 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 82 d1rh1a2 not modelled 11.1 16 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 83 c1zb7A_ not modelled 10.8 50 PDB header:toxin Chain: A: PDB Molecule:neurotoxin; PDBTitle: crystal structure of botulinum neurotoxin type g light chain 84 d1dvha_ not modelled 10.7 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 85 d1peqa1 not modelled 10.5 7 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 86 c2r7tA_ not modelled 10.5 24 PDB header:transferase/rna Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of rotavirus sa11 vp1/rna (ugugaacc)2 complex 87 d1c53a_ not modelled 10.5 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 88 c3ogrA_ not modelled 10.5 23 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 89 d1v2za_ not modelled 10.4 12 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 90 d1txla_ not modelled 10.1 20 Fold:Lipocalins Superfamily:Lipocalins Family:Hypothetical protein YodA 91 c1txlA_ not modelled 10.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:metal-binding protein yoda; PDBTitle: crystal structure of metal-binding protein yoda from e.2 coli, pfam duf149 92 d1zj8a1 not modelled 10.1 18 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 93 c2zonG_ not modelled 9.9 13 PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c 94 d1h9xa1 not modelled 9.8 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 95 c3ivpD_ not modelled 9.7 9 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 96 c3op9A_ not modelled 9.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 97 c2da4A_ not modelled 9.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 98 c2xhlA_ not modelled 9.6 50 PDB header:hydrolase Chain: A: PDB Molecule:botulinum neurotoxin b light chain; PDBTitle: structure of a functional derivative of clostridium2 botulinum neurotoxin type b 99 c2xrhA_ not modelled 9.4 17 PDB header:unknown function Chain: A: PDB Molecule:protein hp0721; PDBTitle: crystal structure of the truncated form of hp0721