Job Description P25889 Confidence 91.81% Date Thu Jan 5 11:42:42 GMT 2012 Rank 361 Aligned Residues 262 % Identity 16% Template c1vliA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution Resolution 2.38 Å

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		7	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure											.	.	.									.	.	.	.	.	.																															.	.
Query SS confidence											.	.	.									.	.	.	.	.	.																															.	.
Query Sequence		S	I	T	F	C	G	V	K	F	.	.	.	P	N	P	F	C	L	S	S	.	.	.	.	.	.	S	P	V	G	N	C	Y	E	M	C	A	K	A	Y	D	T	G	W	G	G	V	V	F	K	T	I	G	F	F	I	.	.	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G	F	K
Query Conservation											.	.	.									.	.	.	.	.	.																															.	.
Alig confidence											.	.	.									.	.	.	.	.	.																															.	.																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	F	Q	I	A	N	K	T	V	G	K	D	A	P	V	F	I	I	A	E	A	G	I	N	H	D	G	K	L	D	Q	A	F	A	L	I	D	A	A	A	E	A	G	A	D	A	V	K	F	Q	X	F	Q	A	D	R	X	Y	Q	K	D	P	D	V	S	I	F	S	L	V	Q	S	X	E	X	P	A	.	.	.
Template Known Secondary structure						T	T					T	T	S										T	T	T	T	T																T		S							B		G	G	G	G	T	S											G	G	G	B	S	S		G	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	E	Q	I	A	E	H	P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M	G	E	N	E	Q	Q	W	E	E	L	A	R	L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	C	P	Q	M	T	S	H	A	M	G	S	D	V	G	Q	S	P	E	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	W	I	L	P	L	L	D	Y	C	R	E	K	.	Q	V	I	F	L	S	T	V	C	D	.	.	.	.	.	.	E	G	S	A	D	L	L	Q	S	T	S	P	S	A	F	K	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	Y	E	I	N	H	L	P	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	G	G											T	.	T						B			S	.	.	.	.	.	.									T	T			S				.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													89	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.													.	.	130	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																							.																								.	.
Query SS confidence																							.																								.	.
Query Sequence		V	E	K	Y	C	R	A	V	K	R	G	S	T	L	P	M	L	A	K	M	T	.	P	N	I	G	D	M	C	E	V	A	L	A	A	K	R	G	G	A	D	G	I	A	A	.	.	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G	K
Query Conservation																							.																								.	.
Alig confidence								.	.	.	.	.											.																								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	Y	V	A	R	.	.	.	.	.	L	N	R	P	X	I	F	S	T	A	G	A	E	I	S	D	V	H	E	A	W	R	T	I	R	A	E	G	N	N	Q	I	A	I	X	H	C	V	A	K	Y	P	A	P	P	E	Y	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	.	.	.	.	.	T		S							T	T															T	T	T											S	S	S	S			G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.											.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																		.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	K	P	I	A	L	R	F	I	Q	Q	M	R	T	H	P	E	L	R	D	F	P	I	S	G	I	G	G	I	E	T	.	W	E	D	A	A	E	F	L	L	L	G	A	A	T	L	Q	V	T	T	G	I	M	Q	Y	.	.	.	.	.	.	.	.	.	.	G	Y	R	I	V	E	D	M	A	S	G	L	S
Query Conservation																																		.																									.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.												.	.														.																									.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.												.	.
Template Sequence		.	.	.	.	.	.	L	S	V	I	P	X	L	A	A	A	F	.	.	P	E	A	V	I	G	F	S	D	H	S	E	H	P	T	E	A	P	C	A	A	V	R	L	G	A	K	L	I	E	K	H	F	T	I	D	K	N	L	P	G	A	D	H	S	F	A	L	N	P	D	E	L	K	E	X	V	D	G	I	R
Template Known Secondary structure		.	.	.	.	.	.	T	T									S	.	.	T	T	S									S	S	S	S									T	T		S						B		S		T	T	S	S		S	S		T	T	S	B
Template Predicted Secondary structure		.	.	.	.	.	.												.	.
Template SS confidence
								194	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.					.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		H	Y	L	A	D	Q	G	F	D	S	.	.	.	.	L	Q	E	M	V	G	L	A	N	N	N	I	V	P	A	E	D	L	D	R	S	Y	I
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.
Template Conservation
Template Sequence		K	T	E	A	E	L	K	Q	G	I	T	K	P	V	S	E	K	L	L	G	S	S	Y	K	T	T	T	A	I	E	G	E	I	R	N	F	A
Template Known Secondary structure										T													S	S					T	T	T		S					T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions