361 c1vliA_ Probab=91.81   E-value=0.9  Score=23.83  Aligned_columns=262  Identities=16%

Q ss_pred             EEEECCEEE---CCCEEECC------CCCCCCHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             789868870---79668558------888888899999996799899980148322--5675761566555200012201
Q batch____         7 SITFCGVKF---PNPFCLSS------SPVGNCYEMCAKAYDTGWGGVVFKTIGFFI--ANEVSPRFDHLVKEDTGFIGFK   75 (411)
Q Consensus         7 s~~~~G~~l---~nPi~~Aa------g~~~~~~~~~~~~~~~G~g~vv~kTv~~~~--~~~~~p~~~~~~~~~~~~~~~~   75 (411)
                      +.++.|..+   ..|+++|-      |.+..-.+++.++.++|+.+|-..|...+.  ..+.....+...+...-..   
T Consensus         2 ~~~I~~~~ig~~~~~~IIAEig~NH~Gdl~~A~~lI~~A~~aGadaVKFQt~~~~~~~~~~~~~~~~~~~~~~el~~---   78 (358)
T c1vliA_           2 AFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQXFQADRXYQKDPDVSIFSLVQSXEXPA---   78 (358)
T ss_dssp             EEEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCCCCCHHHHGGGBSSCG---
T ss_pred             CEEECCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCH---
T ss_conf             76788898579996599976220357878999999999997199789842014210015655630457775316998---


Q ss_pred             CHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCHHHHCCHHH
Q ss_conf             00012337899999999985454497479940468999999999988875388801047872000577642032069899
Q batch____        76 NMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPEL  155 (411)
Q Consensus        76 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~si~g~~~~~~~~~~~~~~~~~ad~ieln~s~p~~~~~~~g~~~~~~~~~  155 (411)
                                 +|.+.+....++. ....+.+...      .+.+..+++.+.+++.            .+..-..+..+
T Consensus        79 -----------e~~~~L~~~~~~~-Gi~f~sTpfd------~~svd~l~~~~v~~~K------------IaS~el~n~pL  128 (358)
T c1vliA_          79 -----------EWILPLLDYCREK-QVIFLSTVCD------EGSADLLQSTSPSAFK------------IASYEINHLPL  128 (358)
T ss_dssp             -----------GGHHHHHHHHHHT-TCEEECBCCS------HHHHHHHHTTCCSCEE------------ECGGGTTCHHH
T ss_pred             -----------HHHHHHHHHHHHC-CCEEEEEECC------HHHHHHHHHCCCCEEE------------ECHHHCCCHHH
T ss_conf             -----------9999999999975-9829983479------9999999863998699------------84122798899


Q ss_pred             HHHHHHHHHHCCCCCCEEEEC-CCCCCHHHHHHHHHHCCCCEEEE--ECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999997336877203420-88220799999999759989999--568787532011243322244653331521372
Q batch____       156 VEKYCRAVKRGSTLPMLAKMT-PNIGDMCEVALAAKRGGADGIAA--INTVKSITNIDLNQKIGMPIVNGKSSISGYSGK  232 (411)
Q Consensus       156 ~~~i~~~v~~~~~~pv~vKl~-p~~~~~~~ia~~l~~~GadgI~~--~nt~~~~~~~~i~~~~~~~~~~~~~~~gg~SG~  232 (411)
                      ++.+.+     +++|+++..- .++.++.+.+..+...|..-+++  ..+..+...-+++                    
T Consensus       129 L~~~A~-----~gkPvilSTGmatl~Ei~~Av~~i~~~g~~~i~llhC~s~YP~p~~~~n--------------------  183 (358)
T c1vliA_         129 LKYVAR-----LNRPXIFSTAGAEISDVHEAWRTIRAEGNNQIAIXHCVAKYPAPPEYSN--------------------  183 (358)
T ss_dssp             HHHHHT-----TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCC--------------------
T ss_pred             HHHHHH-----CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCC--------------------
T ss_conf             999963-----1897185135468899999999999679984899955888898866737--------------------


Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-HHHHHHHHHCCCCEEEEEHHHHHC----------CCHHHHHHHHHHH
Q ss_conf             11356799999999851778827999888899-999999984798758994177624----------8025899999999
Q batch____       233 AVKPIALRFIQQMRTHPELRDFPISGIGGIET-WEDAAEFLLLGAATLQVTTGIMQY----------GYRIVEDMASGLS  301 (411)
Q Consensus       233 ~l~p~al~~v~~i~~~~~~~~ipIi~~GGI~~-~~Dv~~~l~aGA~~Vqv~Ta~~~~----------G~~~~~~i~~~L~  301 (411)
                            |+.+..+++.+  +++||=.++==.. ..-.+-+.++||..+.-.-.+=+.          .|+-++++.++++
T Consensus       184 ------L~~i~~L~~~f--~~~~vG~SDHt~g~~~~~~aAvalGA~vIEKHftldk~~~G~Dh~~Sl~P~el~~lv~~ir  255 (358)
T c1vliA_         184 ------LSVIPXLAAAF--PEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHSFALNPDELKEXVDGIR  255 (358)
T ss_dssp             ------TTHHHHHHHHS--TTSEEEEEECCSSSSHHHHHHHHTTCSEEEEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHC--CCCEECCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf             ------46789999751--7860214776655403568886303000022421463478998023338799999999999


Q ss_pred             HHHHHCCCCC----HHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             9987638653----68860343223455221432341
Q batch____       302 HYLADQGFDS----LQEMVGLANNNIVPAEDLDRSYI  334 (411)
Q Consensus       302 ~~l~~~g~~~----~~~~~g~~~~~~~~~~~~~~~~~  334 (411)
                      ..-...|...    .+++.|...+.+.+.|...+...
T Consensus       256 ~~~~alG~g~k~p~~~~~~~~~~k~~~~~E~~~~~~~  292 (358)
T c1vliA_         256 KTEAELKQGITKPVSEKLLGSSYKTTTAIEGEIRNFA  292 (358)
T ss_dssp             HHHHHHHHTCCCCCCHHHHCCSSCCCCTTTCSHHHHT
T ss_pred             HHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf             9999739874320123202455433565678878640