Email l.a.kelley@imperial.ac.uk Description P77416 Date Thu Jan 5 12:29:02 GMT 2012 Unique Job ID 65e9888d47d12a86

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rkoL_ 100.0 32 PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 2 c3rkoM_ 100.0 19 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 3 c3rkoN_ 100.0 19 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 c3rkoK_ 61.3 20 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 5 c2l3iA_ 33.3 50 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 6 d1a6qa1 24.6 26 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 7 c3r24A_ 14.9 22 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 8 d1s1qa_ 14.6 31 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 9 d1n9wa2 14.5 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 10 c1n9wA_ 14.5 63 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 11 c2kseA_ 14.0 19 PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c 12 c2k21A_ 13.9 28 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 13 c3bjuB_ 13.8 50 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 14 d1r6ra_ 13.7 30 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 15 c1r6rA_ 13.7 30 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 16 c3c25A_ 13.4 50 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 17 c1b8aB_ 12.9 63 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 18 c1wydB_ 12.6 63 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 19 c3fq6A_ 12.5 42 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi 20 c1x55A_ 12.4 50 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 21 c1e22A_ not modelled 12.3 50 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 22 c2xgtB_ not modelled 12.3 38 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 23 c2kncA_ not modelled 11.8 0 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 24 d1o8bb1 not modelled 11.7 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 25 c1asyA_ not modelled 11.6 50 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 26 c3e9hB_ not modelled 11.0 50 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 27 c3m4qA_ not modelled 10.8 38 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 28 c1efwA_ not modelled 10.8 50 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 29 d2gf4a1 not modelled 10.2 17 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Vng1086c-like Family:Vng1086c-like 30 c3mesB_ not modelled 10.2 31 PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030 31 c1ceuA_ not modelled 9.9 25 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 32 c2voyK_ not modelled 9.7 14 PDB header:hydrolase Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 33 d1l0wa3 not modelled 9.7 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 34 d1c0aa3 not modelled 9.4 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 35 c2i3fA_ not modelled 9.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycolipid transfer-like protein; PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria 36 d3d37a2 not modelled 9.4 36 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 37 c1eqrC_ not modelled 9.2 50 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 38 d1b8aa2 not modelled 9.2 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 39 d1eova2 not modelled 9.1 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 40 c3i7fA_ not modelled 9.1 38 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 41 c2ejbA_ not modelled 9.0 40 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 42 d1lgha_ not modelled 9.0 29 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 43 c2re3A_ not modelled 9.0 27 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 44 c3rpfC_ not modelled 8.9 50 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 45 c2hg5D_ not modelled 8.8 10 PDB header:membrane protein Chain: D: PDB Molecule:kcsa channel; PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter 46 c3na2C_ not modelled 8.8 25 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 47 d1sfka_ not modelled 8.7 19 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 48 d1sfkb_ not modelled 8.7 19 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 49 c2uwjG_ not modelled 8.7 32 PDB header:chaperone Chain: G: PDB Molecule:type iii export protein pscg; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 50 d1unca_ not modelled 8.6 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 51 c2jwaA_ not modelled 8.6 15 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 52 d1yu8x1 not modelled 8.5 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 53 c2p04B_ not modelled 8.4 14 PDB header:transferase Chain: B: PDB Molecule:signal transduction histidine kinase; PDBTitle: 2.1 ang structure of the dimerized pas domain of signal transduction2 histidine kinase from nostoc punctiforme pcc 73102 with homology to3 the h-noxa/h-noba domain of the soluble guanylyl cyclase 54 d1unda_ not modelled 8.3 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 55 c3g1zB_ not modelled 8.1 38 PDB header:ligase Chain: B: PDB Molecule:putative lysyl-trna synthetase; PDBTitle: structure of idp01693/yjea, a potential t-rna synthetase from2 salmonella typhimurium 56 c1m93A_ not modelled 8.1 15 PDB header:viral protein Chain: A: PDB Molecule:serine proteinase inhibitor 2; PDBTitle: 1.65 a structure of cleaved viral serpin crma 57 d1swxa_ not modelled 8.0 13 Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP 58 d1sbza_ not modelled 7.9 40 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 59 d2axth1 not modelled 7.9 10 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 60 d2axti1 not modelled 7.8 17 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 61 c2pjmA_ not modelled 7.8 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 62 d1oqwa_ not modelled 7.8 20 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 63 d1r89a1 not modelled 7.8 15 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 64 d2q7ra1 not modelled 7.6 21 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 65 d1nnha_ not modelled 7.5 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 66 d2b1xa1 not modelled 7.4 40 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 67 d2f05a1 not modelled 7.4 30 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 68 d1qzpa_ not modelled 7.4 21 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 69 c3kv0A_ not modelled 7.3 33 PDB header:transport protein Chain: A: PDB Molecule:het-c2; PDBTitle: crystal structure of het-c2: a fungal glycolipid transfer protein2 (gltp) 70 c2l3xA_ not modelled 7.3 21 PDB header:protein binding Chain: A: PDB Molecule:ablim2 protein; PDBTitle: villin head piece domain of human ablim2 71 d2qam31 not modelled 7.2 9 Fold:L35p-like Superfamily:L35p-like Family:Ribosomal protein L35p 72 d1m0sa1 not modelled 7.2 45 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 73 c3zquA_ not modelled 7.2 30 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 74 c2zylA_ not modelled 7.1 40 PDB header:oxidoreductase Chain: A: PDB Molecule:possible oxidoreductase; PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis 75 d1zvpa1 not modelled 7.0 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 76 c2k6nA_ not modelled 7.0 22 PDB header:structural protein Chain: A: PDB Molecule:supervillin; PDBTitle: solution structure of human supervillin headpiece, minimized2 average 77 c2qieB_ not modelled 7.0 50 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 78 c3cu4A_ not modelled 6.9 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 79 d2cosa1 not modelled 6.9 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 80 c1m0sA_ not modelled 6.9 28 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 81 c1lkzB_ not modelled 6.9 19 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 82 c2kwtA_ not modelled 6.9 27 PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [27-59] 83 d1jhda1 not modelled 6.9 17 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 84 d1yu5x1 not modelled 6.8 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 85 c3bs7A_ not modelled 6.8 13 PDB header:signaling protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle 86 d1p9qc3 not modelled 6.8 33 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 87 d1o7na1 not modelled 6.8 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 88 d1ulia1 not modelled 6.7 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 89 d1wqla1 not modelled 6.7 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 90 d1fm0d_ not modelled 6.7 50 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 91 d2ha9a1 not modelled 6.7 23 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:SP0239-like 92 c3gteB_ not modelled 6.7 20 PDB header:electron transport, oxidoreductase Chain: B: PDB Molecule:ddmc; PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron 93 c2q1kA_ not modelled 6.6 44 PDB header:chaperone Chain: A: PDB Molecule:asce; PDBTitle: cyrstal structure of asce from aeromonas hydrophilla 94 d1gdva_ not modelled 6.6 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 95 d1ujsa_ not modelled 6.6 11 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 96 c3acgA_ not modelled 6.6 50 PDB header:hydrolase Chain: A: PDB Molecule:beta-1,4-endoglucanase; PDBTitle: crystal structure of carbohydrate-binding module family 282 from clostridium josui cel5a in complex with cellobiose 97 c1w2lA_ not modelled 6.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 98 c3gkqB_ not modelled 6.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1 99 d1vzva_ not modelled 6.5 29 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin