Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	S	E	V	M	R	Y	I	L	D	L	G	P	T	V	M	L	P	I	V	I	I	I	F	S	K	I	L	G	M	K	A	G	D	C	F	K	A	G	L	H	I	G	I	G	F	V	G	I	G	L	V	I	G	L	M	L	D	S
Secondary structure
SS confidence
Disorder		?																																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	G	P	A	A	K	A	M	A	E	N	F	D	L	N	L	H	V	V	D	V	G	W	P	G	S	S	P	M	T	W	A	S	Q	I	A	L	V	A	I	P	I	A	I	L	V	N	V	A	M	L	L	T	R	M	T	R	V	V	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	D	I	W	N	I	W	H	M	T	F	T	G	A	L	L	H	L	A	T	G	S	W	M	I	G	M	A	G	V	V	I	H	A	A	F	V	Y	K	L	G	D	W	F	A	R	D	T	R	N	F	F	E	L	E	G	I	A	I	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		H	G	T	S	A	Y	M	G	P	I	A	V	L	V	D	A	I	I	E	K	I	P	G	V	N	R	I	K	F	S	A	D	D	I	Q	R	K	F	G	P	F	G	E	P	V	T	V	G	F	V	M	G	L	I	I	G	I	L	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Y	D	V	K	G	V	L	Q	L	A	V	K	T	A	A	V	M	L	L	M	P	R	V	I	K	P	I	M	D	G	L	T	P	I	A	K	Q	A	R	S	R	L	Q	A	K	F	G	G	Q	E	F	L	I	G	L	D	P	A	L	L
Secondary structure
SS confidence
Disorder																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	G	H	T	A	V	V	S	A	S	L	I	F	I	P	L	T	I	L	I	A	V	C	V	P	G	N	Q	V	L	P	F	G	D	L	A	T	I	G	F	F	V	A	M	A	V	A	V	H	R	G	N	L	F	R	T	L	I	S	G
Secondary structure
SS confidence
Disorder																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	I	I	M	S	I	T	L	W	I	A	T	Q	T	I	G	L	H	T	Q	L	A	A	N	A	G	A	L	K	A	G	G	M	V	A	S	M	D	Q	G	G	S	P	I	T	W	L	L	I	Q	V	F	S	P	Q	N	I	P	G	F
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?	?	?								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Sequence		I	I	I	G	A	I	Y	L	T	G	I	F	M	T	W	R	R	A	R	G	F	I	K	Q	E	K	V	V	L	A	E
Secondary structure
SS confidence
Disorder																													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2nsc chain A Region: 200 - 219 Aligned: 20 Modelled: 20 Confidence: 40.8% Identity: 25% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima Phyre2 PDB 1w26 chain A domain 2 Region: 200 - 219 Aligned: 20 Modelled: 20 Confidence: 35.3% Identity: 20% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1p9y chain A Region: 200 - 219 Aligned: 20 Modelled: 20 Confidence: 34.3% Identity: 20% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1t11 chain A domain 2 Region: 200 - 219 Aligned: 20 Modelled: 20 Confidence: 33.7% Identity: 15% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 2d3o chain 1 Region: 200 - 219 Aligned: 20 Modelled: 20 Confidence: 30.3% Identity: 25% PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans Phyre2 PDB 2yvx chain D Region: 225 - 324 Aligned: 83 Modelled: 100 Confidence: 30.2% Identity: 17% PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte Phyre2 PDB 1t11 chain A Region: 200 - 219 Aligned: 20 Modelled: 20 Confidence: 27.4% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor Phyre2 PDB 2qgo chain A Region: 274 - 297 Aligned: 24 Modelled: 24 Confidence: 25.7% Identity: 13% PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus Phyre2 PDB 1osd chain A Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 21.7% Identity: 21% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1cpz chain A Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 20.6% Identity: 21% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2k2p chain A Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 18.7% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 Phyre2 PDB 1yg0 chain A Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 18.7% Identity: 24% PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori Phyre2 PDB 1mwz chain A Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 18.7% Identity: 21% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1y3k chain A Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 16.7% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein Phyre2 PDB 2ga7 chain A Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 16.3% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) Phyre2 PDB 1qb2 chain A Region: 193 - 216 Aligned: 24 Modelled: 24 Confidence: 16.2% Identity: 25% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 2p2e chain A domain 1 Region: 274 - 300 Aligned: 27 Modelled: 27 Confidence: 15.5% Identity: 19% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 PDB 1p6t chain A domain 1 Region: 172 - 213 Aligned: 34 Modelled: 42 Confidence: 14.0% Identity: 18% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1jw2 chain A Region: 192 - 202 Aligned: 11 Modelled: 11 Confidence: 13.9% Identity: 27% Fold: Open three-helical up-and-down bundle Superfamily: Hemolysin expression modulating protein HHA Family: Hemolysin expression modulating protein HHA Phyre2 PDB 1vf5 chain R Region: 130 - 160 Aligned: 31 Modelled: 31 Confidence: 13.5% Identity: 26% PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus Phyre2 1 c2nscA_ 2 d1w26a2 3 d1p9ya_ 4 d1t11a2 5 c2d3o1_ 6 c2yvxD_ 7 c1t11A_ 8 c2qgoA_ 9 d1osda_ 10 d1cpza_ 11 c2k2pA_ 12 c1yg0A_ 13 d1mwza_ 14 c1y3kA_ 15 c2ga7A_ 16 d1qb2a_ 17 d2p2ea1 18 d1p6ta1 19 d1jw2a_ 20 c1vf5R_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2nscA_ 40.8 25 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima 2 d1w26a2 35.3 20 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 3 d1p9ya_ 34.3 20 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 4 d1t11a2 33.7 15 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 5 c2d3o1_ 30.3 25 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 6 c2yvxD_ 30.2 17 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 7 c1t11A_ 27.4 15 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 8 c2qgoA_ 25.7 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus 9 d1osda_ 21.7 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 10 d1cpza_ 20.6 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 11 c2k2pA_ 18.7 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 12 c1yg0A_ 18.7 24 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 13 d1mwza_ 18.7 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 14 c1y3kA_ 16.7 12 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 15 c2ga7A_ 16.3 18 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 16 d1qb2a_ 16.2 25 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 17 d2p2ea1 15.5 19 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 18 d1p6ta1 14.0 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 19 d1jw2a_ 13.9 27 Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA 20 c1vf5R_ 13.5 26 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 21 c2e75E_ not modelled 13.5 26 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 22 c2e74E_ not modelled 13.5 26 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 23 c2e76E_ not modelled 13.5 26 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 24 d2e74e1 not modelled 13.5 26 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 25 d1qzxa2 not modelled 13.2 25 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 26 c2ofhX_ not modelled 13.1 15 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 27 c2aj1A_ not modelled 13.1 15 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 28 d2aw0a_ not modelled 12.6 26 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 29 d1w4ha1 not modelled 12.1 19 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 30 d1afia_ not modelled 11.7 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 31 c3bdlA_ not modelled 11.2 28 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn 32 d1vyva2 not modelled 11.1 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 33 d2cyua1 not modelled 10.8 18 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 34 d2c4ka1 not modelled 10.7 27 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 35 c2kt2A_ not modelled 10.2 29 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 36 d2ffha2 not modelled 9.9 29 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 37 c2kkhA_ not modelled 9.8 21 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 38 c1w26B_ not modelled 9.8 20 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 39 c2iy3A_ not modelled 9.6 25 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 40 d1kvja_ not modelled 9.3 29 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 41 d1vs6z1 not modelled 9.3 25 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p 42 c2vzkD_ not modelled 8.8 26 PDB header:transferase Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain; PDBTitle: structure of the acyl-enzyme complex of an n-terminal2 nucleophile (ntn) hydrolase, oat2 43 c2oarA_ not modelled 8.6 18 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 44 d1sb6a_ not modelled 8.6 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 45 d1s6ua_ not modelled 8.4 35 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 46 d1uwda_ not modelled 8.4 25 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 47 d1p6ta2 not modelled 8.3 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 48 d2oara1 not modelled 7.5 18 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 49 c3bvsA_ not modelled 7.4 10 PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd 50 c2kelB_ not modelled 7.2 29 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 51 c1vf5E_ not modelled 7.2 23 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 52 c1qzwC_ not modelled 7.1 25 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 53 c3k3gA_ not modelled 7.1 10 PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea 54 d2qifa1 not modelled 7.1 13 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 55 d3elga1 not modelled 7.0 19 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 56 d1mn8a_ not modelled 7.0 21 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:MMLV matrix protein-like 57 d2aq0a1 not modelled 6.8 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 58 c2ksdA_ not modelled 6.6 10 PDB header:transferase Chain: A: PDB Molecule:aerobic respiration control sensor protein arcb; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor arcb, center for structures of3 membrane proteins (csmp) target 4310c 59 d1ftra1 not modelled 6.1 24 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 60 d1t3la2 not modelled 5.6 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 61 d1nyta2 not modelled 5.3 33 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 62 d3duea1 not modelled 5.1 13 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 63 c2wwaJ_ not modelled 5.1 7 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 64 c3dv0I_ not modelled 5.1 13 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0