Job Description P25714 Confidence 46.02% Date Thu Jan 5 11:42:16 GMT 2012 Rank 26 Aligned Residues 240 % Identity 10% Template c3mi6A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. Resolution 2.70 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	K	L	I	S	V	K	T	D	V	L	D	L	T	I	N	.	T	R	G	G	D	V	E	Q	A	L	L	P	A	Y	P	K	E	L	N	S	T	Q	P	F	Q	L	L	E	T	S	P	Q	F	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	Q	S	G	L	T	G	R	D	G
Query Conservation																			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	L	T	F	H	L	Q	T	D	H	T	S	Y	I	F	Q	I	X	K	N	G	E	A	G	Q	I	Y	Y	G	P	R	I	H	V	Q	P	T	Y	Q	N	L	X	S	Q	E	W	R	D	A	T	P	S	L	N	E	E	N	P	N	F	Q	P	A	T	I	K	A	E	Y	A	S	L	G	K	G	D	F	R	Q
Template Known Secondary structure		T	T	T							S	S									T	T	S	S														S			T	G	G	G						S	S	S			S		T	T		T	T			G	G	G	S		B	S	S			S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	N	P	A	N	G	P	R	P	L	Y	N	V	E	K	D	A	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	E	G	Q	N	E	L	Q	V	P	M	T	Y	T	D	A	A	G	N	T	F	T	K	T	F	V	L	K	R	G	D	Y	A	V	N	V	N	Y	N	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																																																						.
Template Sequence		P	A	F	Q	V	T	Q	A	N	G	S	R	I	T	E	L	T	Y	D	H	Y	Q	L	L	T	G	K	Q	R	L	A	N	L	P	S	T	F	D	D	T	D	D	D	A	Q	T	L	V	V	S	F	N	.	D	R	I	T	G	L	A	L	D	L	N	Y	S	I	F	P	H	Q	D	V	I	V	K	S	A	K	F
Template Known Secondary structure			S						T	T	S																S					S	S	S							S													.		T	T	T												G	G	G	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Q	N	A	G	E	K	P	L	E	I	S	S	F	G	Q	L	K	Q	S	I	T	L	P	P	H	L	D	T	G	S	S	N	F	A	L	H	T	F	R	G	A	A	Y	S	T	P	D	E	K	Y	E	K	Y	K	F	D	T	I	A	D	N	E	N	L	N	I	S	S	K	G	G	W	V	A	M	L	Q	Q	Y	.
Query Conservation																																																																																	.
Alig confidence																						.	.	.	.	.	.																																																						.
Template Conservation																						.	.	.	.	.	.
Template Sequence		T	N	P	S	S	E	K	L	V	L	N	R	A	L	S	S	Q	L	D	L	.	.	.	.	.	.	P	D	A	N	Y	D	L	I	Q	F	S	G	T	W	A	R	E	R	H	L	Y	R	H	P	L	R	P	G	X	Q	S	I	S	S	L	R	X	A	S	S	H	Q	Q	N	P	F	X	X	L	A	R	P	Q	T
Template Known Secondary structure					S	S	S															.	.	.	.	.	.	S													T	T												S									S	S	S	S		S	S	B		S							T	T
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
									260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																			.	.
Query SS confidence		.	.	.	.	.	.	.																																			.	.
Query Sequence		.	.	.	.	.	.	.	F	A	T	A	W	I	P	H	N	D	G	T	N	N	F	Y	T	A	N	L	G	N	G	I	A	A	I	G	Y	K	S	Q	P	V	.	.	L	V	Q	P	G	Q	T	G	A	M
Query Conservation		.	.	.	.	.	.	.																																			.	.
Alig confidence		.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		T	D	E	Q	G	A	V	F	G	F	N	L	V	Y	S	G	N	F	L	D	A	I	E	V	D	Q	Y	S	T	S	R	I	L	T	G	I	N	P	D	E	F	G	W	N	L	A	P	Q	A	T	F	Q	T
Template Known Secondary structure			S	S	S	B								S			S	S									T	T	S										S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions