Job Description P00861 Confidence 100.00% Date Thu Jan 5 10:56:56 GMT 2012 Rank 2 Aligned Residues 397 % Identity 29% Template c1tufA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.											.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	T	D	T	D	L	T	A	E	N	L	L	R	L	P	A	E	F	G	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	V	.	.	.	.	.	.	.	.	.	.	V	R	F	A	Q	K	A	C	S	N	I	H	I	L	R	L	M	R	E	Q	G	V	K	V	D	S	V
Query Conservation																																													.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	G	R	F	F	I	D	G	Y	D	A	I	E	L	A	E	K	F	G	T	P	L	Y	V	M	S	E	E	Q	I	K	I	N	Y	N	R	Y	I	E	A	F	K	R	W	E	E	E	T	G	K	E	F	I	V	A	Y	A	Y	A	N	A	N	L	A	I	T	R	L	L	A	K	L	G	C	G	A	D	V	V
Template Known Secondary structure		S	S	S	B				T	T												S	S																					T	T					S																								T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																												.																			.	.	.	.
Query SS confidence																																												.																			.	.	.	.
Query Sequence		S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	.	.	.	.	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G
Query Conservation																																												.																			.	.	.	.
Alig confidence																		.	.	.	.																							.																			.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		S	G	G	E	L	Y	I	A	K	L	S	N	V	P	S	K	.	.	.	.	K	I	V	F	N	G	N	C	K	T	K	E	E	I	I	M	G	I	E	A	N	I	R	A	F	N	V	D	S	I	S	E	L	I	L	I	N	E	T	A	K	E	L	G	E	T	A	N	V	A	F	R	I	N	P	N	V	N	P	K
Template Known Secondary structure		S										T	T			G	G	.	.	.	.	G						S													T	T		S																					T								B							T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																						.	.	.																																	.	.	.	.
Query SS confidence																						.	.	.																																	.	.	.	.
Query Sequence		H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	.	.	.	L	P	A	A	L	D	V	I	Q	R	H	H	L	Q	L	V	G	I	H	M	H	I	G	S	G	V	D	Y	A	H	L	E	.	.	.	.	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I	S
Query Conservation																						.	.	.																																	.	.	.	.
Alig confidence																						.	.	.																																	.	.	.	.
Template Conservation
Template Sequence		T	H	P	K	I	S	T	G	L	K	K	N	K	F	G	L	D	V	E	S	G	I	A	M	K	A	I	K	M	A	L	E	M	E	Y	V	N	V	V	G	V	H	C	H	I	G	S	Q	L	T	D	I	S	P	F	I	E	E	T	R	K	V	M	D	F	V	V	E	L	K	E	E	G	I	E	I	E	D	V	N
Template Known Secondary structure		T	S										S	S		S			T	T	T	T											T		S	S												S	S	B																						T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q	M	G	S	R	H	F	V	L	V	D	A	G	F	N
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		L	G	G	G	L	G	I	P	Y	Y	K	D	K	Q	I	P	T	Q	K	D	L	A	D	A	I	I	N	T	M	L	K	Y	K	D	K	V	E	.	M	P	N	L	I	L	E	P	G	R	S	L	V	A	T	A	G	Y	L	L	G	K	V	H	H	I	K	E	T	P	V	T	K	W	V	M	I	D	A	G	M	N
Template Known Secondary structure						B					S	S	S	S																		T	T	T	T	T	S		.									S					G	G	G														S	S							S			T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y	L	V	L	H	D	T	G	A	Y	G	A	S	M	S
Query Conservation
Alig confidence																				.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		D	M	M	R	P	A	M	Y	E	A	Y	H	H	I	I	N	C	K	.	.	.	.	.	.	V	K	N	E	K	E	V	V	S	I	A	G	G	L	C	E	S	S	D	V	F	G	R	D	.	.	.	.	.	.	.	R	E	L	D	K	V	E	V	G	D	V	L	A	I	F	D	V	G	A	Y	G	I	S	M	A
Template Known Secondary structure		T																S	B	.	.	.	.	.	.			S										S	S	S		T	T							.	.	.	.	.	.	.								T	T									S	S	S	S	G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.							.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.								.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	Y	N	S	R	P	L	L	P	E	V	L	F	D	N	G	Q	A	R	L	I	R	R	R	Q	T	I	E	E	L	L	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	Y	N	A	R	G	R	P	R	M	V	L	T	S	K	K	G	V	F	L	I	R	E	R	E	T	Y	A	D	L	I	A	K	D	I	V
Template Known Secondary structure				T	T	T											T	T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.