2 c1tufA_ Probab=100.00  E-value=0  Score=614.99  Aligned_columns=397  Identities=29%

Q ss_pred             HCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCE----------EEEEEHHCCCHHHHHHHHHCCCEEEEE
Q ss_conf             1235564788999999872997799649999999999871122----------673100159999999999769908980
Q batch____         6 FSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDV----------VRFAQKACSNIHILRLMREQGVKVDSV   75 (420)
Q Consensus         6 ~~~~~~~~~~~l~~l~~~~gtP~~v~d~~~i~~n~~~l~~~~~----------i~yavKaN~~~~il~~l~~~G~g~dva   75 (420)
                      ......+.+.++.+|+++||||+||||+++|++|++++++++.          ++||+|||+++.|++.+.+.|+|+||+
T Consensus        10 ~~~~l~~~g~~~~~l~~~~gTP~~v~d~~~i~~n~~~~~~~~~~~~~~~~~~~~~~a~Kan~~~~i~~~l~~~G~g~~v~   89 (433)
T c1tufA_          10 KDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYANANLAITRLLAKLGCGADVV   89 (433)
T ss_dssp             SSSBEEETTEEHHHHHHHHCSSEEEEEHHHHHHHHHHHHHHHTTHHHHSCCCEEEEEECCCCCHHHHHHHHHTTCEEEEC
T ss_pred             ECCEEEECCEEHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHCCCEEEEEEEECCCCHHHHHHHHHCCCEEEEE
T ss_conf             88979977864999998639988997399999999999998554101037506999862279999999999749829981


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHCC----CCCEEEEEECCCCCC
Q ss_conf             999999999869885356450899289989999999997797-999789999999997366----782589983287866
Q batch____        76 SLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQI-PVNAGSVDMLDQLGQVSP----GHRVWLRVNPGFGHG  150 (420)
Q Consensus        76 S~~El~~a~~~G~~~~~~~~~ii~~~~~k~~~~l~~a~~~~i-~i~vds~~el~~l~~~~~----~~~i~iRi~~~~~~~  150 (420)
                      |++|+++++++|+++.    +|+|+||+|++++++.+++.++ .+++||++|++.+.+.++    ..++.+||+|+...+
T Consensus        90 S~~E~~~a~~~G~~~~----~i~~~gp~k~~~~l~~a~~~g~~~i~iDs~~el~~l~~~a~~~~~~~~v~iRvn~~~~~~  165 (433)
T c1tufA_          90 SGGELYIAKLSNVPSK----KIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPK  165 (433)
T ss_dssp             SHHHHHHHHHTTCCGG----GEEECCSCCCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEBEECCCCTT
T ss_pred             CHHHHHHHHHCCCCCC----EEEECCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf             9999999998498934----599949999999999999879839998898999999999885499747999970689877


Q ss_pred             CCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH----HHHHHHHHHHHHCCCCCEEEE
Q ss_conf             54223557876716687999---99999999857980999994068689817999----999999999996199960997
Q batch____       151 HSQKTNTGGENSKHGIWYTD---LPAALDVIQRHHLQLVGIHMHIGSGVDYAHLE----QVCGAMVRQVIEFGQDLQAIS  223 (420)
Q Consensus       151 ~~~~~~~~~~~skFGi~~~~---~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~----~~~~~~~~~~~~~g~~l~~id  223 (420)
                      .+..++||+.+||||+++++   +..+.++.+.+++++.|+|||+|||+.+.+.+    +.+..+++.+.+.+..++++|
T Consensus       166 ~~~~~~tg~~~srfGi~~~~~~~~~~i~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~in  245 (433)
T c1tufA_         166 THPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVN  245 (433)
T ss_dssp             TSHHHHHHHHHSSCSEETTTTHHHHHHHHHHTCSSEEECEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHTTTCCCSEEE
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             52111468876620142888789999999972699709999963389898989999999999999999986179972998


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCEEEEEEEEEEEECCCEEEEEEECCCC
Q ss_conf             02888867689877899899999999999988751689838999534276212538999997786319817999817201
Q batch____       224 AGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFN  303 (420)
Q Consensus       224 iGGG~~v~y~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vK~~~~~~~~i~d~g~~  303 (420)
                      +||||+++|.+....++++.|...+...+.++..... .+++++|||||++++||+++|+|+++|++++++|+++|+|++
T Consensus       246 iGGG~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~l~~EpGr~lv~~ag~~vt~V~~vk~~~~~~~~~vd~G~~  324 (433)
T c1tufA_         246 LGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVE-MPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMN  324 (433)
T ss_dssp             CCCCBCCCCSSSSCCCCHHHHHHHHHHHHHTTTTTSC-CCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTT
T ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCEEEECCCEEEEEEEEEEECCCEEEEEECCCCC
T ss_conf             1688786767776688999999999999998502378-857999202058826827999988899439849999818434


Q ss_pred             CCCCHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHC
Q ss_conf             47565551842211330367777765762589998125577645441156653343489988898999958860668774
Q batch____       304 DLMRPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMS  383 (420)
Q Consensus       304 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~~~~~~~~LP~l~~GD~l~i~~~GAY~~s~~  383 (420)
                      +++++.+++.++++....      ...+.++++|+|++||++|+++.+       ++||++++||+|+|.|||||+++|+
T Consensus       325 ~~~~~~l~~~~~~i~~~~------~~~~~~~~~I~G~~C~~~D~l~~~-------~~lp~~~~GD~vvi~~~GAY~~s~~  391 (433)
T c1tufA_         325 DMMRPAMYEAYHHIINCK------VKNEKEVVSIAGGLCESSDVFGRD-------RELDKVEVGDVLAIFDVGAYGISMA  391 (433)
T ss_dssp             TCCHHHHHCCCCCEEESB------CCSCEEEEEEECSSSCTTCEEEEE-------EEEECCCTTCEEEECCCSSSSGGGC
T ss_pred             CCCCHHHCCCCCEEEECC------CCCCCEEEEEEECCCCCCCEEEEE-------EECCCCCCCCEEEEECCCCHHHHHC
T ss_conf             684877608631254147------878804899982133687787620-------1458888888999958873012456


Q ss_pred             CCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHCCCC
Q ss_conf             7878897671899989978999934998999740579
Q batch____       384 SNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALELL  420 (420)
Q Consensus       384 ~~fn~~~~p~~v~i~~g~~~~irr~e~~~~~~~~~~~  420 (420)
                      ++||++|+|++|++++|+.++|||+||++|+|++|+|
T Consensus       392 ~~fn~~~~p~~v~~~~~~~~~ir~~e~~~d~~~~~~~  428 (433)
T c1tufA_         392 NNYNARGRPRMVLTSKKGVFLIRERETYADLIAKDIV  428 (433)
T ss_dssp             CCTTTCCCCEEEEEETTEEEEEECCCCHHHHTTTCCC
T ss_pred             CCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHCCCC
T ss_conf             7877888875999979947999933998899740688